Wall clock time and date at job start Mon Mar 30 2020 04:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55360 * 2 1 4 4 C 1.53003 * 117.49953 * 128.49422 * 3 2 1 5 5 C 1.52994 * 60.00169 * 252.51105 * 4 3 2 6 6 C 1.53298 * 109.51314 * 239.87208 * 2 1 3 7 7 N 1.47149 * 108.38486 * 292.38067 * 6 2 1 8 8 C 1.34772 * 120.98132 * 129.44541 * 7 6 2 9 9 O 1.21694 * 119.99915 * 175.32042 * 8 7 6 10 10 C 1.46376 * 119.99968 * 355.31429 * 8 7 6 11 11 H 1.07997 * 119.99930 * 7.64194 * 10 8 7 12 12 C 1.40046 * 119.99710 * 187.63818 * 10 8 7 13 13 N 1.30674 * 120.00334 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 120.00107 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47125 * 89.99766 * 14 12 10 16 16 H 1.48499 * 109.47357 * 210.00180 * 14 12 10 17 17 H 1.48500 * 109.46869 * 330.00224 * 14 12 10 18 18 C 1.47157 * 118.03393 * 309.46250 * 7 6 2 19 19 C 1.53296 * 108.38258 * 50.53835 * 18 7 6 20 20 O 1.42958 * 109.51361 * 120.12686 * 2 1 3 21 21 H 1.08994 * 109.47325 * 180.12412 * 1 2 3 22 22 H 1.09004 * 109.47214 * 300.12858 * 1 2 3 23 23 H 1.09005 * 109.47362 * 60.12206 * 1 2 3 24 24 H 1.08998 * 115.55137 * 274.20571 * 3 2 1 25 25 H 1.09005 * 117.49618 * 0.02562 * 4 3 2 26 26 H 1.08995 * 117.50078 * 145.02135 * 4 3 2 27 27 H 1.09003 * 117.50147 * 252.51534 * 5 4 3 28 28 H 1.09000 * 117.50288 * 107.48697 * 5 4 3 29 29 H 1.09002 * 109.67597 * 52.10389 * 6 2 1 30 30 H 1.08999 * 109.68139 * 172.64971 * 6 2 1 31 31 H 0.97000 * 120.00216 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.67957 * 170.26086 * 18 7 6 33 33 H 1.09000 * 109.67642 * 290.81281 * 18 7 6 34 34 H 1.08995 * 109.51412 * 67.62329 * 19 18 7 35 35 H 1.09003 * 109.50503 * 187.72309 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 6 3.0745 1.8248 1.0622 5 6 1.6366 2.3355 1.1739 6 6 2.0420 -0.7253 -1.2497 7 7 1.6959 -2.1507 -1.1336 8 6 1.0708 -2.7969 -2.1376 9 8 0.8691 -3.9944 -2.0581 10 6 0.6344 -2.0583 -3.3237 11 1 0.9201 -1.0247 -3.4516 12 6 -0.1535 -2.6921 -4.2926 13 7 -0.4995 -3.9427 -4.1376 14 14 -0.7098 -1.7499 -5.8066 15 1 0.3000 -1.9042 -6.8845 16 1 -2.0150 -2.2849 -6.2707 17 1 -0.8566 -0.3115 -5.4681 18 6 2.0521 -2.8497 0.1114 19 6 1.5395 -2.0210 1.2948 20 8 2.0075 -0.6763 1.1654 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3634 0.5158 0.8889 23 1 -0.3634 0.5120 -0.8911 24 1 2.1314 1.9089 -0.9807 25 1 3.3893 1.0494 1.7608 26 1 3.8435 2.5439 0.7804 27 1 1.4596 3.3906 0.9653 28 1 1.0050 1.8963 1.9461 29 1 1.5704 -0.3041 -2.1376 30 1 3.1240 -0.6147 -1.3208 31 1 -1.0449 -4.3818 -4.8089 32 1 1.5872 -3.8355 0.1248 33 1 3.1352 -2.9531 0.1773 34 1 0.4496 -2.0284 1.2995 35 1 1.9106 -2.4484 2.2263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597922708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:46 Heat of formation + Delta-G solvation = -71.561101 kcal Electronic energy + Delta-G solvation = -18103.289963 eV Core-core repulsion = 15294.558399 eV Total energy + Delta-G solvation = -2808.731564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25657 -39.01136 -37.27980 -35.19395 -34.64974 -32.81692 -30.31359 -28.37513 -27.10602 -24.95448 -23.33732 -22.99162 -21.05686 -20.27046 -18.57617 -17.94482 -17.35465 -16.85948 -16.24312 -16.12001 -15.72416 -15.38007 -15.16931 -14.58186 -14.15042 -13.81706 -13.73624 -13.19331 -13.14472 -12.90847 -12.72647 -12.45855 -12.19122 -12.13623 -12.05293 -11.94701 -11.54815 -11.22582 -11.03031 -10.95421 -10.64300 -9.82431 -9.05158 -8.32185 -6.86389 1.38697 1.39947 1.55091 2.20839 2.43059 2.61134 2.76821 3.04920 3.55123 3.71995 3.90218 4.00101 4.11964 4.21541 4.24425 4.40165 4.45061 4.53623 4.63093 4.67374 4.81478 4.87930 4.93999 4.96204 4.99687 5.16470 5.29514 5.34879 5.36709 5.46903 5.67597 6.07141 6.25366 6.31934 6.85332 7.35244 8.41989 8.64054 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028919 B = 0.008175 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.987315 B = 3424.076374 C = 4079.489056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.157 4.157 4 C -0.161 4.161 5 C -0.160 4.160 6 C 0.103 3.897 7 N -0.645 5.645 8 C 0.544 3.456 9 O -0.632 6.632 10 C -0.565 4.565 11 H 0.093 0.907 12 C 0.030 3.970 13 N -0.824 5.824 14 Si 0.993 3.007 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.244 1.244 18 C 0.082 3.918 19 C 0.058 3.942 20 O -0.374 6.374 21 H 0.033 0.967 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.127 0.873 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.274 0.726 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 13.620 7.780 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.096 3.904 3 C -0.175 4.175 4 C -0.198 4.198 5 C -0.197 4.197 6 C -0.020 4.020 7 N -0.382 5.382 8 C 0.350 3.650 9 O -0.520 6.520 10 C -0.601 4.601 11 H 0.111 0.889 12 C -0.185 4.185 13 N -0.453 5.453 14 Si 0.812 3.188 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.167 1.167 18 C -0.042 4.042 19 C -0.019 4.019 20 O -0.293 6.293 21 H 0.052 0.948 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.145 0.855 25 H 0.109 0.891 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.303 12.896 7.911 15.486 hybrid contribution -0.448 -0.611 -0.893 1.171 sum 2.855 12.285 7.018 14.433 Atomic orbital electron populations 1.22178 0.95422 1.01143 1.02934 1.21254 0.93037 0.91250 0.84891 1.22182 1.06666 0.91974 0.96714 1.22880 0.92682 1.02985 1.01256 1.22950 0.98059 0.99431 0.99246 1.22199 0.99389 0.81252 0.99190 1.48090 1.63259 1.10555 1.16290 1.18668 0.76614 0.86308 0.83368 1.90539 1.62051 1.17458 1.81946 1.21419 1.34625 0.99453 1.04580 0.88920 1.26983 0.93883 0.95351 1.02319 1.70180 1.28148 1.12837 1.34146 0.85084 0.77943 0.79457 0.76298 1.18751 1.19833 1.16689 1.21958 0.99449 0.97017 0.85750 1.22933 0.98537 0.82311 0.98134 1.87860 1.72519 1.25274 1.43675 0.94768 0.90782 0.91263 0.85516 0.89071 0.87412 0.86940 0.89373 0.88979 0.92427 0.91577 0.91889 0.92239 0.93635 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 7.94 71.98 0.57 -4.59 16 2 C 0.14 4.26 0.92 -10.70 -0.01 4.25 16 3 C -0.16 -3.82 5.16 -10.79 -0.06 -3.87 16 4 C -0.16 -3.43 9.87 30.59 0.30 -3.13 16 5 C -0.16 -3.21 9.68 30.59 0.30 -2.91 16 6 C 0.10 3.93 5.21 86.36 0.45 4.38 16 7 N -0.64 -30.35 2.54 -822.42 -2.09 -32.44 16 8 C 0.54 32.04 7.62 86.36 0.66 32.70 16 9 O -0.63 -43.09 14.56 -4.33 -0.06 -43.15 16 10 C -0.56 -31.74 8.86 24.83 0.22 -31.52 16 11 H 0.09 4.64 5.73 -2.91 -0.02 4.63 16 12 C 0.03 1.65 5.50 85.30 0.47 2.12 16 13 N -0.82 -50.55 11.86 21.84 0.26 -50.29 16 14 Si 0.99 40.48 29.56 68.60 2.03 42.51 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 16 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 17 H -0.24 -9.06 7.11 99.48 0.71 -8.35 16 18 C 0.08 3.36 6.62 86.35 0.57 3.93 16 19 C 0.06 1.89 6.60 72.08 0.48 2.36 16 20 O -0.37 -11.86 8.58 -148.98 -1.28 -13.14 16 21 H 0.03 1.32 6.11 -2.39 -0.01 1.30 16 22 H 0.07 2.05 7.28 -2.39 -0.02 2.03 16 23 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.13 2.78 8.11 -2.39 -0.02 2.76 16 25 H 0.09 2.20 7.06 -2.38 -0.02 2.18 16 26 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 1.88 7.60 -2.39 -0.02 1.87 16 29 H 0.09 3.60 5.40 -2.39 -0.01 3.59 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16 32 H 0.06 2.90 7.12 -2.39 -0.02 2.89 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.57 6.25 -2.39 -0.01 1.55 16 35 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -74.20 280.18 3.89 -70.30 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.09 Total: 22.51 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 3.95 Total: 3.71 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -1.83 Total: -82.74 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -1.34 Total: -56.29 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -74.20 3.89 -70.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597922708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.258 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds