Wall clock time and date at job start Mon Mar 30 2020 03:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46836 * 2 1 4 4 C 1.53000 * 109.46972 * 119.99661 * 2 1 3 5 5 N 1.46503 * 109.47055 * 65.00649 * 4 2 1 6 6 C 1.39567 * 120.00016 * 180.02562 * 5 4 2 7 7 N 1.33757 * 125.52546 * 359.96257 * 6 5 4 8 8 C 1.31618 * 109.64410 * 180.02562 * 7 6 5 9 9 N 1.38296 * 126.00147 * 180.02562 * 8 7 6 10 10 N 1.34928 * 107.98803 * 0.02562 * 8 7 6 11 11 C 1.46500 * 126.76987 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.46944 * 90.00085 * 11 10 8 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 N 1.31093 * 125.52370 * 180.25887 * 6 5 4 21 21 H 1.09003 * 109.47156 * 299.99996 * 1 2 3 22 22 H 1.08998 * 109.47549 * 59.99791 * 1 2 3 23 23 H 1.08998 * 109.46988 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46754 * 240.00294 * 2 1 3 25 25 H 1.09002 * 109.46754 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47066 * 299.99676 * 3 2 1 27 27 H 1.09003 * 109.47245 * 60.00059 * 3 2 1 28 28 H 1.08992 * 109.47712 * 304.99837 * 4 2 1 29 29 H 1.09000 * 109.46499 * 184.99862 * 4 2 1 30 30 H 0.97000 * 119.99600 * 359.97438 * 5 4 2 31 31 H 0.97007 * 119.99572 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00336 * 359.97438 * 9 8 7 33 33 H 1.09000 * 109.46609 * 330.00266 * 11 10 8 34 34 H 1.08999 * 109.46486 * 210.00346 * 11 10 8 35 35 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 2.0078 -2.9977 2.2268 7 7 2.6987 -2.6577 3.3205 8 6 2.8583 -3.7141 4.0892 9 7 3.5217 -3.7439 5.3023 10 7 2.2610 -4.7626 3.4856 11 6 2.1916 -6.1385 3.9842 12 6 0.9536 -6.3054 4.8271 13 1 0.2856 -5.4701 4.9768 14 6 0.6743 -7.5243 5.4080 15 7 1.4912 -8.5396 5.2308 16 14 -0.8599 -7.7310 6.4534 17 1 -2.0620 -7.4417 5.6309 18 1 -0.9303 -9.1257 6.9586 19 1 -0.8072 -6.7902 7.6012 20 7 1.7232 -4.2761 2.2834 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 3.1263 -0.6442 1.2951 30 1 1.1484 -2.4662 0.4319 31 1 3.5871 -4.5746 5.7990 32 1 3.9215 -2.9343 5.6566 33 1 3.0738 -6.3509 4.5881 34 1 2.1532 -6.8287 3.1414 35 1 2.2880 -8.4322 4.6882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087587045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:40 Heat of formation + Delta-G solvation = 78.382787 kcal Electronic energy + Delta-G solvation = -16798.413405 eV Core-core repulsion = 14060.769398 eV Total energy + Delta-G solvation = -2737.644007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94974 -37.27068 -34.78854 -33.84415 -32.89800 -31.34712 -28.86477 -27.29469 -26.65400 -25.04889 -23.14865 -20.93457 -20.31791 -19.88854 -17.46921 -16.87790 -16.03580 -15.63399 -15.11108 -14.95217 -14.70788 -14.08850 -13.77520 -13.50648 -13.15796 -12.68776 -12.50491 -12.21293 -12.11113 -11.31386 -11.18217 -11.14033 -10.91051 -10.77631 -10.68416 -10.59731 -10.19012 -9.72064 -8.99139 -8.67541 -8.59477 -8.14292 -7.06246 -6.58397 -4.35614 2.88531 3.12528 3.35424 3.38243 3.50567 3.56829 4.00711 4.37767 4.52787 4.73831 4.81153 4.98062 5.13060 5.45763 5.50254 5.60625 5.61753 5.73217 5.79958 5.94777 6.00701 6.09981 6.24542 6.34277 6.60634 6.87450 7.04100 7.38332 7.53003 7.69931 8.05690 8.09620 8.18085 8.36925 8.57502 9.28971 9.34310 10.76801 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.035404 B = 0.004980 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.687608 B = 5621.695066 C = 5980.435250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.156 3.844 5 N -0.710 5.710 6 C 0.470 3.530 7 N -0.627 5.627 8 C 0.538 3.462 9 N -0.828 5.828 10 N -0.370 5.370 11 C 0.255 3.745 12 C -0.614 4.614 13 H 0.057 0.943 14 C 0.026 3.974 15 N -0.902 5.902 16 Si 1.075 2.925 17 H -0.286 1.286 18 H -0.280 1.280 19 H -0.286 1.286 20 N -0.375 5.375 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.406 0.594 31 H 0.414 0.586 32 H 0.413 0.587 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 14.858 -5.675 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.031 3.969 5 N -0.358 5.358 6 C 0.099 3.901 7 N -0.374 5.374 8 C 0.171 3.829 9 N -0.384 5.384 10 N -0.165 5.165 11 C 0.135 3.865 12 C -0.653 4.653 13 H 0.075 0.925 14 C -0.179 4.179 15 N -0.537 5.537 16 Si 0.902 3.098 17 H -0.212 1.212 18 H -0.205 1.205 19 H -0.212 1.212 20 N -0.214 5.214 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.243 0.757 31 H 0.245 0.755 32 H 0.243 0.757 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.272 13.704 -5.181 14.706 hybrid contribution 0.900 0.800 -0.610 1.349 sum 2.172 14.504 -5.790 15.767 Atomic orbital electron populations 1.21851 0.94831 1.02168 1.01662 1.21351 0.96431 0.96613 0.98381 1.21743 1.01141 0.95195 1.01959 1.21111 0.99038 0.79893 0.96897 1.43067 1.64830 1.06582 1.21274 1.19957 0.93653 0.87729 0.88732 1.70135 1.32761 1.27025 1.07433 1.19826 0.90639 0.84469 0.87998 1.40882 1.63142 1.15418 1.19002 1.49926 1.42335 1.09975 1.14273 1.19530 0.98225 0.73934 0.94800 1.22201 1.08923 1.00174 1.33996 0.92453 1.25901 1.03070 0.91467 0.97489 1.70845 1.13010 1.32453 1.37411 0.83441 0.74334 0.76254 0.75756 1.21209 1.20471 1.21224 1.78089 1.30273 1.08987 1.04099 0.92494 0.92802 0.92353 0.90740 0.92445 0.92466 0.92382 0.92550 0.92650 0.75732 0.75477 0.75697 0.94739 0.93935 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.07 37.16 0.34 -1.09 16 2 C -0.11 -1.07 2.96 -90.62 -0.27 -1.34 16 3 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 4 C 0.16 2.08 5.40 -4.04 -0.02 2.05 16 5 N -0.71 -11.71 5.48 -62.00 -0.34 -12.05 16 6 C 0.47 10.08 8.89 -321.23 -2.86 7.23 16 7 N -0.63 -13.42 10.88 -14.37 -0.16 -13.57 16 8 C 0.54 11.61 9.09 -320.87 -2.92 8.70 16 9 N -0.83 -13.87 9.06 30.03 0.27 -13.60 16 10 N -0.37 -8.99 3.63 -63.13 -0.23 -9.22 16 11 C 0.25 6.52 5.36 -5.20 -0.03 6.49 16 12 C -0.61 -17.12 9.39 -34.44 -0.32 -17.44 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.03 0.72 5.46 -17.82 -0.10 0.62 16 15 N -0.90 -25.94 13.65 55.43 0.76 -25.18 16 16 Si 1.08 24.64 29.90 -169.99 -5.08 19.56 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 20 N -0.38 -9.12 12.70 29.98 0.38 -8.74 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.61 7.18 -51.93 -0.37 0.24 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.41 6.04 7.78 -40.82 -0.32 5.73 16 31 H 0.41 6.68 8.11 -40.82 -0.33 6.35 16 32 H 0.41 5.56 8.95 -40.82 -0.37 5.19 16 33 H 0.03 0.84 7.39 -51.93 -0.38 0.46 16 34 H 0.04 1.16 8.01 -51.93 -0.42 0.74 16 35 H 0.27 7.57 7.22 -40.82 -0.29 7.28 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -32.42 299.03 -10.79 -43.21 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.07 Total: 10.70 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -5.83 Total: 4.39 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: 0.68 Total: -82.36 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.42 -10.79 -43.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087587045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.593 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds