Wall clock time and date at job start Mon Mar 30 2020 03:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46599 * 2 1 4 4 C 1.52991 * 109.47477 * 239.99677 * 2 1 3 5 5 N 1.46503 * 109.46708 * 119.99344 * 2 1 3 6 6 C 1.39567 * 120.00016 * 60.01011 * 5 2 1 7 7 N 1.33757 * 125.52546 * 359.96257 * 6 5 2 8 8 C 1.31618 * 109.64410 * 180.02562 * 7 6 5 9 9 N 1.38296 * 126.00147 * 180.02562 * 8 7 6 10 10 N 1.34928 * 107.98803 * 0.02562 * 8 7 6 11 11 C 1.46500 * 126.76987 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.46944 * 90.00085 * 11 10 8 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 N 1.31093 * 125.52370 * 180.25887 * 6 5 2 21 21 H 1.08996 * 109.47174 * 299.99894 * 1 2 3 22 22 H 1.09003 * 109.47115 * 60.00923 * 1 2 3 23 23 H 1.09001 * 109.46636 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46835 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47107 * 299.99376 * 3 2 1 26 26 H 1.08999 * 109.47711 * 59.99561 * 3 2 1 27 27 H 1.09008 * 109.47266 * 299.99935 * 4 2 1 28 28 H 1.09003 * 109.47438 * 59.99598 * 4 2 1 29 29 H 1.09000 * 109.47460 * 180.02562 * 4 2 1 30 30 H 0.97000 * 119.99600 * 239.99599 * 5 2 1 31 31 H 0.97007 * 119.99572 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00336 * 359.97438 * 9 8 7 33 33 H 1.09000 * 109.46609 * 330.00266 * 11 10 8 34 34 H 1.08999 * 109.46486 * 210.00346 * 11 10 8 35 35 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 1.6812 -2.0267 1.4172 7 7 0.9223 -2.7799 0.6136 8 6 0.8051 -3.9888 1.1208 9 7 0.0946 -5.0377 0.5662 10 7 1.4999 -4.0247 2.2768 11 6 1.6451 -5.1711 3.1775 12 6 2.8548 -5.9750 2.7763 13 1 3.4553 -5.6636 1.9343 14 6 3.1945 -7.1089 3.4834 15 7 2.4596 -7.4917 4.5047 16 14 4.6937 -8.1060 2.9856 17 1 5.9062 -7.2530 3.0715 18 1 4.8409 -9.2679 3.8987 19 1 4.5262 -8.5894 1.5915 20 7 2.0527 -2.7455 2.4487 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6765 1.9565 0.8899 27 1 1.6768 -1.7490 -1.2491 28 1 1.6768 -0.2076 -2.1392 29 1 3.1301 -0.7217 -1.2489 30 1 2.5760 -0.2190 1.8347 31 1 0.0669 -5.8964 1.0165 32 1 -0.3760 -4.9147 -0.2730 33 1 0.7553 -5.7974 3.1145 34 1 1.7678 -4.8158 4.2006 35 1 1.6809 -6.9742 4.7630 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087587046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:41 Heat of formation + Delta-G solvation = 89.233123 kcal Electronic energy + Delta-G solvation = -17344.264390 eV Core-core repulsion = 14607.090889 eV Total energy + Delta-G solvation = -2737.173501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98451 -37.64672 -34.47814 -33.83423 -31.99821 -30.79831 -28.52886 -27.30283 -26.96598 -26.14762 -23.17817 -20.97722 -20.61268 -19.07135 -17.41326 -16.88234 -15.99915 -15.39823 -15.04817 -14.74837 -14.21680 -14.06959 -13.78343 -13.38312 -12.81789 -12.27628 -12.17281 -12.03003 -11.82381 -11.44403 -11.30513 -11.22492 -10.92843 -10.72811 -10.63340 -10.44748 -10.19148 -9.70793 -8.90759 -8.68351 -8.59306 -8.10392 -7.05915 -6.58135 -4.35385 2.90494 3.12872 3.35240 3.38151 3.50836 3.56671 4.01264 4.37632 4.52233 4.97019 5.10506 5.13300 5.26447 5.53073 5.63021 5.75820 5.85233 5.92021 5.93653 6.14292 6.22264 6.36573 6.61507 6.65762 6.71062 6.89772 7.04855 7.41707 7.55623 7.70384 8.06669 8.12034 8.22504 8.37687 8.57711 9.30796 9.34970 10.76934 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038083 B = 0.005724 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.057818 B = 4890.809133 C = 5066.780845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.195 3.805 3 C -0.153 4.153 4 C -0.162 4.162 5 N -0.704 5.704 6 C 0.476 3.524 7 N -0.621 5.621 8 C 0.535 3.465 9 N -0.829 5.829 10 N -0.371 5.371 11 C 0.255 3.745 12 C -0.614 4.614 13 H 0.057 0.943 14 C 0.026 3.974 15 N -0.902 5.902 16 Si 1.075 2.925 17 H -0.286 1.286 18 H -0.280 1.280 19 H -0.286 1.286 20 N -0.377 5.377 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.405 0.595 31 H 0.414 0.586 32 H 0.412 0.588 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 11.084 -9.521 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.108 3.892 3 C -0.211 4.211 4 C -0.221 4.221 5 N -0.351 5.351 6 C 0.105 3.895 7 N -0.368 5.368 8 C 0.168 3.832 9 N -0.385 5.385 10 N -0.166 5.166 11 C 0.136 3.864 12 C -0.652 4.652 13 H 0.075 0.925 14 C -0.179 4.179 15 N -0.537 5.537 16 Si 0.902 3.098 17 H -0.212 1.212 18 H -0.205 1.205 19 H -0.212 1.212 20 N -0.216 5.216 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.241 0.759 31 H 0.245 0.755 32 H 0.243 0.757 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.079 10.059 -8.873 13.762 hybrid contribution -0.891 0.973 -0.255 1.344 sum -3.970 11.032 -9.128 14.859 Atomic orbital electron populations 1.22263 0.95136 1.04145 1.00452 1.19992 0.93721 0.90546 0.84916 1.22044 1.01473 0.95110 1.02435 1.22265 1.00562 1.03173 0.96058 1.43368 1.59596 1.05731 1.26409 1.19930 0.92799 0.87337 0.89453 1.70149 1.32093 1.01214 1.33311 1.19918 0.89870 0.88366 0.85011 1.40887 1.58024 1.11056 1.28541 1.49901 1.38770 1.09765 1.18123 1.19511 0.97938 0.79743 0.89245 1.22197 1.12485 1.11959 1.18591 0.92481 1.25894 1.02542 0.95977 0.93519 1.70845 1.16582 1.40741 1.25562 0.83444 0.74559 0.75985 0.75819 1.21225 1.20477 1.21240 1.78099 1.29257 0.90672 1.23604 0.93435 0.92844 0.89801 0.92186 0.91216 0.92232 0.89776 0.92859 0.93351 0.75901 0.75533 0.75746 0.94803 0.94011 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.43 37.16 0.31 -1.83 16 2 C 0.20 2.60 1.07 -131.82 -0.14 2.46 16 3 C -0.15 -1.52 8.59 37.16 0.32 -1.20 16 4 C -0.16 -2.23 8.43 37.15 0.31 -1.91 16 5 N -0.70 -11.51 5.28 -49.27 -0.26 -11.77 16 6 C 0.48 9.87 8.15 -321.23 -2.62 7.25 16 7 N -0.62 -12.52 7.42 -14.37 -0.11 -12.62 16 8 C 0.54 11.19 9.09 -320.87 -2.92 8.28 16 9 N -0.83 -13.51 9.06 30.03 0.27 -13.23 16 10 N -0.37 -8.86 3.63 -63.13 -0.23 -9.09 16 11 C 0.26 6.49 5.36 -5.20 -0.03 6.47 16 12 C -0.61 -17.03 9.39 -34.44 -0.32 -17.35 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.03 0.71 5.46 -17.82 -0.10 0.62 16 15 N -0.90 -25.90 13.65 55.43 0.76 -25.15 16 16 Si 1.07 24.62 29.90 -169.99 -5.08 19.54 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 20 N -0.38 -9.04 12.70 29.98 0.38 -8.66 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.08 1.33 6.24 -51.93 -0.32 1.01 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.39 6.24 -51.92 -0.32 1.06 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.41 6.04 8.60 -40.82 -0.35 5.69 16 31 H 0.41 6.57 8.11 -40.82 -0.33 6.24 16 32 H 0.41 5.37 8.95 -40.82 -0.37 5.00 16 33 H 0.03 0.82 7.39 -51.93 -0.38 0.44 16 34 H 0.04 1.14 8.01 -51.93 -0.42 0.72 16 35 H 0.27 7.56 7.22 -40.82 -0.29 7.27 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -31.69 292.51 -9.99 -41.69 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.96 Total: 12.12 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -5.18 Total: 2.77 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: 0.81 Total: -80.52 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.69 -9.99 -41.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087587046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.921 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds