Wall clock time and date at job start Mon Mar 30 2020 03:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46599 * 2 1 4 4 C 1.52991 * 109.47477 * 239.99677 * 2 1 3 5 5 N 1.46503 * 109.46708 * 119.99344 * 2 1 3 6 6 C 1.39567 * 120.00016 * 60.01011 * 5 2 1 7 7 N 1.33757 * 125.52546 * 359.96257 * 6 5 2 8 8 C 1.31618 * 109.64410 * 180.02562 * 7 6 5 9 9 N 1.38296 * 126.00147 * 180.02562 * 8 7 6 10 10 N 1.34928 * 107.98803 * 0.02562 * 8 7 6 11 11 C 1.46500 * 126.76987 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.46944 * 90.00085 * 11 10 8 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 N 1.31093 * 125.52370 * 180.25887 * 6 5 2 21 21 H 1.08996 * 109.47174 * 299.99894 * 1 2 3 22 22 H 1.09003 * 109.47115 * 60.00923 * 1 2 3 23 23 H 1.09001 * 109.46636 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46835 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47107 * 299.99376 * 3 2 1 26 26 H 1.08999 * 109.47711 * 59.99561 * 3 2 1 27 27 H 1.09008 * 109.47266 * 299.99935 * 4 2 1 28 28 H 1.09003 * 109.47438 * 59.99598 * 4 2 1 29 29 H 1.09000 * 109.47460 * 180.02562 * 4 2 1 30 30 H 0.97000 * 119.99600 * 239.99599 * 5 2 1 31 31 H 0.97007 * 119.99572 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00336 * 359.97438 * 9 8 7 33 33 H 1.09000 * 109.46609 * 330.00266 * 11 10 8 34 34 H 1.08999 * 109.46486 * 210.00346 * 11 10 8 35 35 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 1.6812 -2.0267 1.4172 7 7 0.9223 -2.7799 0.6136 8 6 0.8051 -3.9888 1.1208 9 7 0.0946 -5.0377 0.5662 10 7 1.4999 -4.0247 2.2768 11 6 1.6451 -5.1711 3.1775 12 6 2.8548 -5.9750 2.7763 13 1 3.4553 -5.6636 1.9343 14 6 3.1945 -7.1089 3.4834 15 7 2.4596 -7.4917 4.5047 16 14 4.6937 -8.1060 2.9856 17 1 5.9062 -7.2530 3.0715 18 1 4.8409 -9.2679 3.8987 19 1 4.5262 -8.5894 1.5915 20 7 2.0527 -2.7455 2.4487 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6765 1.9565 0.8899 27 1 1.6768 -1.7490 -1.2491 28 1 1.6768 -0.2076 -2.1392 29 1 3.1301 -0.7217 -1.2489 30 1 2.5760 -0.2190 1.8347 31 1 0.0669 -5.8964 1.0165 32 1 -0.3760 -4.9147 -0.2730 33 1 0.7553 -5.7974 3.1145 34 1 1.7678 -4.8158 4.2006 35 1 1.6809 -6.9742 4.7630 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087587046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:41 Heat of formation + Delta-G solvation = 71.354484 kcal Electronic energy + Delta-G solvation = -17345.039666 eV Core-core repulsion = 14607.090889 eV Total energy + Delta-G solvation = -2737.948777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.62529 -38.84492 -36.26651 -35.52976 -33.74880 -32.23812 -30.21971 -28.36980 -28.03876 -27.88533 -25.17902 -22.47017 -22.24551 -20.37501 -19.33283 -18.52606 -17.39825 -17.04954 -16.47208 -16.29134 -15.79195 -15.61534 -15.14262 -14.71942 -14.53997 -14.02098 -13.46798 -13.23480 -12.97250 -12.87561 -12.67978 -12.54234 -12.46399 -12.38940 -11.95800 -11.88824 -11.65766 -11.51703 -10.70260 -10.53530 -10.49195 -9.60382 -8.87911 -8.56087 -6.57445 1.22160 1.50533 1.52201 1.57244 1.79304 2.09066 2.40316 2.48291 3.00524 3.00877 3.92292 3.99146 4.13859 4.26532 4.44734 4.55971 4.77568 4.83751 4.90650 4.95686 5.02809 5.13560 5.24206 5.35324 5.40967 5.55155 5.56333 5.59331 5.81891 5.99714 6.18050 6.34349 6.62842 6.70887 6.88617 7.19337 7.72762 8.57398 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038083 B = 0.005724 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.057818 B = 4890.809133 C = 5066.780845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.187 3.813 3 C -0.145 4.145 4 C -0.158 4.158 5 N -0.695 5.695 6 C 0.478 3.522 7 N -0.612 5.612 8 C 0.531 3.469 9 N -0.808 5.808 10 N -0.395 5.395 11 C 0.269 3.731 12 C -0.623 4.623 13 H 0.037 0.963 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 1.119 2.881 17 H -0.281 1.281 18 H -0.275 1.275 19 H -0.267 1.267 20 N -0.427 5.427 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.410 0.590 31 H 0.417 0.583 32 H 0.429 0.571 33 H 0.045 0.955 34 H 0.015 0.985 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 12.038 -11.232 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.101 3.899 3 C -0.202 4.202 4 C -0.217 4.217 5 N -0.342 5.342 6 C 0.108 3.892 7 N -0.359 5.359 8 C 0.164 3.836 9 N -0.366 5.366 10 N -0.191 5.191 11 C 0.148 3.852 12 C -0.662 4.662 13 H 0.056 0.944 14 C -0.214 4.214 15 N -0.554 5.554 16 Si 0.940 3.060 17 H -0.207 1.207 18 H -0.199 1.199 19 H -0.192 1.192 20 N -0.268 5.268 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.247 0.753 31 H 0.249 0.751 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.070 11.052 -10.636 15.643 hybrid contribution -0.974 0.781 0.205 1.265 sum -4.044 11.832 -10.431 16.284 Atomic orbital electron populations 1.22205 0.94929 1.02620 1.01778 1.20347 0.93957 0.92216 0.83391 1.22005 1.01773 0.92478 1.03990 1.22216 1.00172 1.01757 0.97513 1.43761 1.58965 1.04073 1.27435 1.20396 0.91681 0.88659 0.88505 1.70302 1.32097 1.00810 1.32738 1.20456 0.89409 0.89483 0.84288 1.40897 1.56796 1.10065 1.28852 1.49685 1.40635 1.09615 1.19130 1.19150 0.97564 0.80217 0.88305 1.22313 1.13188 1.12560 1.18110 0.94433 1.27220 1.04399 0.96903 0.92828 1.70944 1.16967 1.41067 1.26443 0.82893 0.71614 0.74939 0.76600 1.20720 1.19940 1.19176 1.78005 1.31711 0.91261 1.25797 0.93534 0.90100 0.92664 0.91739 0.88835 0.91500 0.92802 0.90031 0.93871 0.75264 0.75103 0.73736 0.93765 0.96700 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 8.43 71.98 0.61 -3.22 16 2 C 0.19 4.56 1.07 3.60 0.00 4.57 16 3 C -0.14 -2.40 8.59 71.98 0.62 -1.78 16 4 C -0.16 -4.03 8.43 71.98 0.61 -3.42 16 5 N -0.70 -22.14 5.28 -309.78 -1.63 -23.78 16 6 C 0.48 19.91 8.15 260.93 2.13 22.04 16 7 N -0.61 -24.60 7.42 -199.39 -1.48 -26.08 16 8 C 0.53 22.22 9.09 260.81 2.37 24.59 16 9 N -0.81 -25.72 9.06 -58.90 -0.53 -26.25 16 10 N -0.39 -19.28 3.63 -353.65 -1.28 -20.56 16 11 C 0.27 14.04 5.36 85.63 0.46 14.50 16 12 C -0.62 -35.14 9.39 25.60 0.24 -34.89 16 13 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 14 C -0.01 -0.72 5.46 84.66 0.46 -0.26 16 15 N -0.92 -53.09 13.65 21.45 0.29 -52.80 16 16 Si 1.12 49.06 29.90 68.60 2.05 51.11 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 N -0.43 -20.93 12.70 -59.05 -0.75 -21.68 16 21 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.68 6.24 -2.39 -0.01 1.67 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.71 6.24 -2.38 -0.01 1.70 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.41 11.91 8.60 -92.71 -0.80 11.12 16 31 H 0.42 12.97 8.11 -92.70 -0.75 12.22 16 32 H 0.43 10.57 8.95 -92.71 -0.83 9.74 16 33 H 0.04 2.19 7.39 -2.39 -0.02 2.17 16 34 H 0.01 0.85 8.01 -2.39 -0.02 0.83 16 35 H 0.26 15.01 7.22 -92.71 -0.67 14.34 16 Total: -1.00 -69.00 292.51 3.00 -66.00 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -1.15 Total: 31.93 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 7.49 Total: 22.12 kcal Atomic # 7 Polarization: -165.77 SS G_CDS: -5.39 Total: -171.16 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Total: -69.00 3.00 -66.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087587046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.355 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds