Wall clock time and date at job start Mon Mar 30 2020 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47113 * 2 1 4 4 C 1.50704 * 109.47345 * 240.00086 * 2 1 3 5 5 H 1.07996 * 120.00045 * 245.01726 * 4 2 1 6 6 C 1.37881 * 119.99914 * 65.01719 * 4 2 1 7 7 N 1.31517 * 120.00063 * 7.08372 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 187.08896 * 6 4 2 9 9 H 1.48504 * 109.47362 * 94.93904 * 8 6 4 10 10 H 1.48504 * 109.47236 * 214.93819 * 8 6 4 11 11 H 1.48497 * 109.47141 * 334.93895 * 8 6 4 12 12 N 1.46896 * 109.47479 * 119.99788 * 2 1 3 13 13 C 1.46725 * 111.00216 * 188.11875 * 12 2 1 14 14 C 1.53681 * 109.81753 * 171.25967 * 13 12 2 15 15 N 1.47046 * 106.98177 * 50.57207 * 14 13 12 16 16 C 1.33228 * 128.72523 * 128.09491 * 15 14 13 17 17 O 1.21584 * 123.22742 * 12.18015 * 16 15 14 18 18 N 1.34539 * 113.58755 * 192.26106 * 16 15 14 19 19 C 1.47240 * 109.01398 * 355.93847 * 18 16 15 20 20 C 1.47919 * 122.09544 * 311.40158 * 15 14 13 21 21 H 1.08997 * 111.59795 * 287.09144 * 20 15 14 22 22 C 1.47089 * 110.99838 * 62.39528 * 12 2 1 23 23 H 1.08992 * 109.47347 * 292.07994 * 1 2 3 24 24 H 1.09004 * 109.47370 * 52.08400 * 1 2 3 25 25 H 1.09000 * 109.46932 * 172.08221 * 1 2 3 26 26 H 0.96993 * 119.99931 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.41401 * 51.15509 * 13 12 2 28 28 H 1.09001 * 109.35573 * 291.32820 * 13 12 2 29 29 H 1.08999 * 109.95192 * 291.20768 * 14 13 12 30 30 H 1.08999 * 110.02246 * 169.97683 * 14 13 12 31 31 H 0.97003 * 125.58436 * 176.03243 * 18 16 15 32 32 H 1.08995 * 110.55856 * 238.73139 * 19 18 16 33 33 H 1.08994 * 110.55937 * 116.02875 * 19 18 16 34 34 H 1.09007 * 109.61088 * 70.01557 * 22 12 2 35 35 H 1.09006 * 109.61098 * 309.50447 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5848 -1.6333 -1.1335 6 6 1.7867 -0.1821 -2.4801 7 7 1.2383 1.0078 -2.5948 8 14 2.2328 -1.1563 -4.0102 9 1 1.0427 -1.9086 -4.4826 10 1 2.6849 -0.2256 -5.0754 11 1 3.3254 -2.1094 -3.6892 12 7 2.0197 -0.6924 1.1994 13 6 3.4735 -0.5467 1.3340 14 6 3.9272 -1.0878 2.6989 15 7 3.3475 -2.4315 2.8426 16 6 3.9588 -3.5744 3.1509 17 8 5.0976 -3.6279 3.5735 18 7 3.1965 -4.6643 2.9485 19 6 1.8518 -4.2377 2.5267 20 6 1.9181 -2.7034 2.5760 21 1 1.2797 -2.3010 3.3625 22 6 1.5955 -2.1008 1.2051 23 1 -0.3633 0.3863 0.9522 24 1 -0.3634 0.6315 -0.8108 25 1 -0.3633 -1.0179 -0.1416 26 1 1.0658 1.3796 -3.4739 27 1 3.7409 0.5070 1.2549 28 1 3.9677 -1.1065 0.5399 29 1 3.5638 -0.4389 3.4957 30 1 5.0151 -1.1464 2.7343 31 1 3.4842 -5.5836 3.0629 32 1 1.0972 -4.6106 3.2192 33 1 1.6422 -4.5794 1.5132 34 1 2.1321 -2.6476 0.4296 35 1 0.5226 -2.1605 1.0224 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091753017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:49 Heat of formation + Delta-G solvation = -0.703880 kcal Electronic energy + Delta-G solvation = -18075.082584 eV Core-core repulsion = 15301.716370 eV Total energy + Delta-G solvation = -2773.366213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95291 -37.61760 -35.84085 -34.08275 -32.26718 -30.68866 -29.53249 -26.94578 -25.32948 -24.61576 -22.49250 -21.29663 -20.10964 -19.08951 -17.31798 -16.45368 -16.40022 -15.19700 -15.04998 -14.66281 -14.13597 -13.99905 -13.70413 -13.54903 -12.98489 -12.85020 -12.36592 -11.83896 -11.45973 -11.31489 -11.13754 -11.01823 -10.76414 -10.68032 -10.34548 -10.02015 -9.96868 -9.71957 -9.32692 -9.10172 -8.48043 -8.27334 -7.27530 -6.10074 -4.19506 2.83983 3.21371 3.29897 3.32546 3.39216 4.11770 4.33849 4.50199 4.98683 5.08426 5.12521 5.19697 5.47895 5.58553 5.71242 5.74588 5.94331 6.05926 6.26973 6.32756 6.52220 6.66748 6.77408 6.88554 7.01986 7.05277 7.25961 7.42494 7.56856 7.76099 7.83228 8.00227 8.17451 8.29686 8.84561 8.89133 9.48067 10.93317 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030336 B = 0.007467 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.763670 B = 3748.734493 C = 3919.455807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.208 3.792 3 H 0.047 0.953 4 C -0.547 4.547 5 H 0.055 0.945 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.885 3.115 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.540 5.540 13 C 0.051 3.949 14 C 0.155 3.845 15 N -0.623 5.623 16 C 0.702 3.298 17 O -0.600 6.600 18 N -0.749 5.749 19 C 0.096 3.904 20 C 0.117 3.883 21 H 0.095 0.905 22 C 0.060 3.940 23 H 0.021 0.979 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.424 0.576 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -6.825 8.307 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.102 3.898 3 H 0.064 0.936 4 C -0.586 4.586 5 H 0.073 0.927 6 C -0.132 4.132 7 N -0.522 5.522 8 Si 0.713 3.287 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.264 5.264 13 C -0.079 4.079 14 C 0.033 3.967 15 N -0.361 5.361 16 C 0.403 3.597 17 O -0.480 6.480 18 N -0.411 5.411 19 C -0.030 4.030 20 C 0.012 3.988 21 H 0.113 0.887 22 C -0.070 4.070 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.265 0.735 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.174 -6.281 8.800 10.875 hybrid contribution 0.524 -1.331 -1.790 2.291 sum -0.651 -7.611 7.010 10.368 Atomic orbital electron populations 1.21731 0.97894 0.99685 0.98957 1.19295 0.91995 0.94474 0.84013 0.93558 1.21662 1.36168 1.08945 0.91797 0.92691 1.24897 0.94872 0.94519 0.98893 1.69931 1.43280 1.15178 1.23833 0.86698 0.78656 0.80142 0.83226 1.20648 1.21174 1.20068 1.62024 1.10345 1.11446 1.42620 1.22293 0.90136 1.01027 0.94416 1.21734 0.97874 0.79036 0.98031 1.47396 1.09559 1.07367 1.71762 1.15802 0.84005 0.81406 0.78531 1.90905 1.17584 1.86344 1.53160 1.45287 1.13309 1.07872 1.74669 1.22332 0.85243 0.94099 1.01336 1.22464 0.83555 0.92975 0.99775 0.88703 1.22327 1.01507 0.90705 0.92423 0.96013 0.91478 0.95105 0.92814 0.90100 0.94080 0.91125 0.89817 0.73506 0.90209 0.90066 0.93679 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 8.57 37.16 0.32 -2.41 16 2 C 0.21 4.81 2.20 -68.87 -0.15 4.66 16 3 H 0.05 1.20 7.95 -51.93 -0.41 0.79 16 4 C -0.55 -13.93 7.21 -34.44 -0.25 -14.18 16 5 H 0.05 1.43 6.01 -52.49 -0.32 1.12 16 6 C 0.07 1.88 5.27 -17.82 -0.09 1.79 16 7 N -0.88 -24.23 12.08 55.43 0.67 -23.56 16 8 Si 0.88 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.54 -10.48 4.49 -227.46 -1.02 -11.51 16 13 C 0.05 0.94 5.30 -3.57 -0.02 0.92 16 14 C 0.16 2.50 7.12 -3.39 -0.02 2.48 16 15 N -0.62 -10.26 3.03 -169.94 -0.51 -10.77 16 16 C 0.70 12.25 8.64 -88.50 -0.76 11.48 16 17 O -0.60 -12.62 17.71 5.29 0.09 -12.53 16 18 N -0.75 -9.91 6.42 -64.84 -0.42 -10.33 16 19 C 0.10 1.08 7.68 -3.30 -0.03 1.06 16 20 C 0.12 1.66 4.11 -66.72 -0.27 1.38 16 21 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 22 C 0.06 1.03 4.17 -3.62 -0.02 1.01 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.63 6.97 -51.93 -0.36 1.27 16 25 H 0.03 0.64 6.66 -51.93 -0.35 0.29 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.08 1.46 7.97 -51.93 -0.41 1.05 16 28 H 0.04 0.86 7.35 -51.93 -0.38 0.47 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 31 H 0.42 4.60 8.96 -40.82 -0.37 4.24 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.88 7.65 -51.93 -0.40 0.48 16 34 H 0.05 0.88 6.49 -51.93 -0.34 0.54 16 35 H 0.08 1.41 6.12 -51.93 -0.32 1.09 16 LS Contribution 275.83 15.07 4.16 4.16 Total: -1.00 -30.43 275.83 -8.24 -38.67 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.89 Total: 2.08 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.30 Total: 8.18 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -1.28 Total: -56.17 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.43 -8.24 -38.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091753017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.964 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds