Wall clock time and date at job start Mon Mar 30 2020 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47113 * 2 1 4 4 C 1.50704 * 109.47345 * 240.00086 * 2 1 3 5 5 H 1.07996 * 120.00045 * 245.01726 * 4 2 1 6 6 C 1.37881 * 119.99914 * 65.01719 * 4 2 1 7 7 N 1.31517 * 120.00063 * 7.08372 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 187.08896 * 6 4 2 9 9 H 1.48504 * 109.47362 * 94.93904 * 8 6 4 10 10 H 1.48504 * 109.47236 * 214.93819 * 8 6 4 11 11 H 1.48497 * 109.47141 * 334.93895 * 8 6 4 12 12 N 1.46896 * 109.47479 * 119.99788 * 2 1 3 13 13 C 1.46725 * 111.00216 * 188.11875 * 12 2 1 14 14 C 1.53681 * 109.81753 * 171.25967 * 13 12 2 15 15 N 1.47046 * 106.98177 * 50.57207 * 14 13 12 16 16 C 1.33228 * 128.72523 * 128.09491 * 15 14 13 17 17 O 1.21584 * 123.22742 * 12.18015 * 16 15 14 18 18 N 1.34539 * 113.58755 * 192.26106 * 16 15 14 19 19 C 1.47240 * 109.01398 * 355.93847 * 18 16 15 20 20 C 1.47919 * 122.09544 * 311.40158 * 15 14 13 21 21 H 1.08997 * 111.59795 * 287.09144 * 20 15 14 22 22 C 1.47089 * 110.99838 * 62.39528 * 12 2 1 23 23 H 1.08992 * 109.47347 * 292.07994 * 1 2 3 24 24 H 1.09004 * 109.47370 * 52.08400 * 1 2 3 25 25 H 1.09000 * 109.46932 * 172.08221 * 1 2 3 26 26 H 0.96993 * 119.99931 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.41401 * 51.15509 * 13 12 2 28 28 H 1.09001 * 109.35573 * 291.32820 * 13 12 2 29 29 H 1.08999 * 109.95192 * 291.20768 * 14 13 12 30 30 H 1.08999 * 110.02246 * 169.97683 * 14 13 12 31 31 H 0.97003 * 125.58436 * 176.03243 * 18 16 15 32 32 H 1.08995 * 110.55856 * 238.73139 * 19 18 16 33 33 H 1.08994 * 110.55937 * 116.02875 * 19 18 16 34 34 H 1.09007 * 109.61088 * 70.01557 * 22 12 2 35 35 H 1.09006 * 109.61098 * 309.50447 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5848 -1.6333 -1.1335 6 6 1.7867 -0.1821 -2.4801 7 7 1.2383 1.0078 -2.5948 8 14 2.2328 -1.1563 -4.0102 9 1 1.0427 -1.9086 -4.4826 10 1 2.6849 -0.2256 -5.0754 11 1 3.3254 -2.1094 -3.6892 12 7 2.0197 -0.6924 1.1994 13 6 3.4735 -0.5467 1.3340 14 6 3.9272 -1.0878 2.6989 15 7 3.3475 -2.4315 2.8426 16 6 3.9588 -3.5744 3.1509 17 8 5.0976 -3.6279 3.5735 18 7 3.1965 -4.6643 2.9485 19 6 1.8518 -4.2377 2.5267 20 6 1.9181 -2.7034 2.5760 21 1 1.2797 -2.3010 3.3625 22 6 1.5955 -2.1008 1.2051 23 1 -0.3633 0.3863 0.9522 24 1 -0.3634 0.6315 -0.8108 25 1 -0.3633 -1.0179 -0.1416 26 1 1.0658 1.3796 -3.4739 27 1 3.7409 0.5070 1.2549 28 1 3.9677 -1.1065 0.5399 29 1 3.5638 -0.4389 3.4957 30 1 5.0151 -1.1464 2.7343 31 1 3.4842 -5.5836 3.0629 32 1 1.0972 -4.6106 3.2192 33 1 1.6422 -4.5794 1.5132 34 1 2.1321 -2.6476 0.4296 35 1 0.5226 -2.1605 1.0224 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091753017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:49 Heat of formation + Delta-G solvation = -23.855242 kcal Electronic energy + Delta-G solvation = -18076.086502 eV Core-core repulsion = 15301.716370 eV Total energy + Delta-G solvation = -2774.370131 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20774 -39.16086 -37.25111 -35.58224 -34.03857 -31.98167 -31.20646 -28.30493 -27.23172 -26.04801 -23.84377 -22.60258 -21.74015 -20.57249 -18.58774 -18.24527 -17.68896 -16.86295 -16.53694 -16.11339 -15.67375 -15.34846 -15.15114 -14.94262 -14.68091 -14.04618 -13.79231 -13.52652 -13.12255 -12.94953 -12.74651 -12.53464 -12.44203 -12.34542 -12.11294 -11.70658 -11.62552 -11.24614 -11.18165 -10.50061 -10.32458 -9.51980 -8.96355 -8.09450 -6.26642 1.34771 1.38564 1.45698 1.63972 2.08049 2.38660 3.03958 3.14153 3.20013 3.72146 3.83174 3.97804 4.29957 4.35071 4.45661 4.60368 4.69272 4.82095 4.87529 4.93067 5.04549 5.09102 5.15336 5.21140 5.24092 5.54459 5.69098 5.74758 5.91295 6.15701 6.23148 6.30576 6.56161 6.58267 6.92719 7.43776 7.58099 8.90169 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030336 B = 0.007467 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.763670 B = 3748.734493 C = 3919.455807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.212 3.788 3 H 0.012 0.988 4 C -0.548 4.548 5 H 0.045 0.955 6 C 0.026 3.974 7 N -0.912 5.912 8 Si 0.940 3.060 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.534 5.534 13 C 0.057 3.943 14 C 0.163 3.837 15 N -0.631 5.631 16 C 0.692 3.308 17 O -0.643 6.643 18 N -0.735 5.735 19 C 0.101 3.899 20 C 0.121 3.879 21 H 0.118 0.882 22 C 0.063 3.937 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.262 0.738 27 H 0.078 0.922 28 H 0.010 0.990 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.436 0.564 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.019 0.981 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 -8.338 9.246 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 H 0.030 0.970 4 C -0.587 4.587 5 H 0.063 0.937 6 C -0.174 4.174 7 N -0.551 5.551 8 Si 0.767 3.233 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.258 5.258 13 C -0.073 4.073 14 C 0.041 3.959 15 N -0.368 5.368 16 C 0.392 3.608 17 O -0.527 6.527 18 N -0.398 5.398 19 C -0.024 4.024 20 C 0.017 3.983 21 H 0.135 0.865 22 C -0.066 4.066 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.028 0.972 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.279 0.721 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.309 -7.832 9.739 12.709 hybrid contribution 0.871 -0.852 -2.075 2.406 sum -1.438 -8.684 7.664 11.671 Atomic orbital electron populations 1.21538 0.96685 0.99737 0.99001 1.19092 0.92854 0.92834 0.84756 0.97031 1.21864 1.35497 1.08445 0.92894 0.93694 1.25536 0.95202 0.95285 1.01399 1.70032 1.44451 1.16284 1.24283 0.85832 0.78393 0.78823 0.80280 1.19796 1.21187 1.20387 1.61981 1.10674 1.12897 1.40262 1.22243 0.89392 1.00577 0.95080 1.21620 0.97906 0.79522 0.96814 1.47500 1.10616 1.07202 1.71469 1.16075 0.83752 0.82396 0.78529 1.90868 1.19574 1.87042 1.55176 1.45241 1.13636 1.07548 1.73362 1.22527 0.84969 0.91781 1.03123 1.22614 0.82441 0.95092 0.98150 0.86451 1.22366 1.01516 0.88865 0.93887 0.93909 0.94179 0.94160 0.92856 0.90392 0.97201 0.89070 0.90014 0.72085 0.85881 0.89283 0.96272 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 8.57 71.98 0.62 -4.18 16 2 C 0.21 9.85 2.20 44.17 0.10 9.94 16 3 H 0.01 0.62 7.95 -2.39 -0.02 0.60 16 4 C -0.55 -28.20 7.21 25.60 0.18 -28.01 16 5 H 0.04 2.37 6.01 -2.91 -0.02 2.36 16 6 C 0.03 1.39 5.27 84.66 0.45 1.84 16 7 N -0.91 -50.60 12.08 21.45 0.26 -50.34 16 8 Si 0.94 42.53 29.54 68.60 2.03 44.56 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.53 -20.38 4.49 -873.56 -3.92 -24.30 16 13 C 0.06 2.10 5.30 86.57 0.46 2.56 16 14 C 0.16 5.11 7.12 86.50 0.62 5.73 16 15 N -0.63 -19.63 3.03 -810.68 -2.45 -22.09 16 16 C 0.69 23.00 8.64 179.61 1.55 24.56 16 17 O -0.64 -26.67 17.71 -3.98 -0.07 -26.74 16 18 N -0.74 -17.36 6.42 -477.47 -3.06 -20.43 16 19 C 0.10 1.87 7.68 86.46 0.66 2.53 16 20 C 0.12 3.05 4.11 45.00 0.19 3.23 16 21 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 22 C 0.06 2.04 4.17 86.33 0.36 2.40 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.04 1.93 6.97 -2.39 -0.02 1.92 16 25 H 0.04 1.62 6.66 -2.39 -0.02 1.60 16 26 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.08 2.89 7.97 -2.39 -0.02 2.87 16 28 H 0.01 0.42 7.35 -2.39 -0.02 0.40 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 2.60 7.94 -2.39 -0.02 2.58 16 31 H 0.44 8.23 8.96 -92.71 -0.83 7.40 16 32 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.59 7.65 -2.39 -0.02 1.58 16 34 H 0.02 0.73 6.49 -2.38 -0.02 0.71 16 35 H 0.09 2.87 6.12 -2.38 -0.01 2.86 16 Total: -1.00 -66.28 275.83 -1.78 -68.06 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.27 Total: 10.69 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.18 Total: 20.60 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -9.18 Total: -117.16 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.07 Total: -26.74 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -66.28 -1.78 -68.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091753017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.201 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds