Wall clock time and date at job start Mon Mar 30 2020 03:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47387 * 2 1 4 4 N 1.46493 * 109.47310 * 120.00064 * 2 1 3 5 5 N 1.29021 * 126.43842 * 299.68774 * 4 2 1 6 6 N 1.28737 * 108.80997 * 180.26073 * 5 4 2 7 7 N 1.28838 * 109.39886 * 359.97438 * 6 5 4 8 8 C 1.31070 * 107.99206 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.66569 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46653 * 270.03903 * 9 8 7 11 11 C 1.46899 * 111.00288 * 66.04554 * 10 9 8 12 12 C 1.46900 * 110.99741 * 189.99455 * 10 9 8 13 13 C 1.50697 * 109.47300 * 169.99952 * 12 10 9 14 14 H 1.08004 * 119.99902 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00178 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00230 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47073 * 59.99774 * 17 15 13 19 19 H 1.48498 * 109.47535 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47480 * 299.99739 * 17 15 13 21 21 H 1.09002 * 109.46906 * 300.00293 * 1 2 3 22 22 H 1.09005 * 109.47036 * 59.99463 * 1 2 3 23 23 H 1.08994 * 109.47169 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47002 * 240.00657 * 2 1 3 25 25 H 1.09002 * 109.46883 * 59.99688 * 3 2 1 26 26 H 1.08998 * 109.46886 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46800 * 300.00159 * 3 2 1 28 28 H 1.09000 * 109.47074 * 30.03310 * 9 8 7 29 29 H 1.08993 * 109.47120 * 150.03766 * 9 8 7 30 30 H 1.09008 * 109.46999 * 59.99620 * 11 10 9 31 31 H 1.08999 * 109.47374 * 179.97438 * 11 10 9 32 32 H 1.09004 * 109.47001 * 299.99726 * 11 10 9 33 33 H 1.08998 * 109.47536 * 290.00578 * 12 10 9 34 34 H 1.09007 * 109.46844 * 50.00023 * 12 10 9 35 35 H 0.96992 * 120.00428 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7892 -0.3566 2.4211 6 7 2.3847 -1.1929 3.1977 7 7 3.0019 -2.0725 2.4867 8 6 2.7950 -1.7896 1.2237 9 6 3.3242 -2.5475 0.0334 10 7 4.6276 -1.9948 -0.3589 11 6 5.6354 -2.2326 0.6831 12 6 5.0651 -2.5435 -1.6494 13 6 6.2708 -1.7818 -2.1363 14 1 6.6722 -0.9714 -1.5459 15 6 6.8615 -2.1195 -3.3355 16 7 6.3731 -3.1067 -4.0542 17 14 8.3564 -1.1758 -3.9387 18 1 9.4557 -1.3044 -2.9485 19 1 8.7987 -1.7303 -5.2433 20 1 8.0039 0.2573 -4.1035 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9564 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.4393 -3.5995 0.2944 29 1 2.6248 -2.4536 -0.7973 30 1 5.7448 -3.3051 0.8448 31 1 6.5908 -1.8139 0.3669 32 1 5.3185 -1.7557 1.6107 33 1 5.3244 -3.5952 -1.5279 34 1 4.2583 -2.4499 -2.3763 35 1 6.7888 -3.3445 -4.8976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177186174.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:00 Heat of formation + Delta-G solvation = 114.431469 kcal Electronic energy + Delta-G solvation = -17459.587405 eV Core-core repulsion = 14723.506587 eV Total energy + Delta-G solvation = -2736.080819 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.90241 -37.08261 -36.71005 -33.04105 -32.37998 -31.79490 -27.89572 -27.53663 -27.04739 -24.72744 -24.16631 -22.28202 -21.02085 -20.23062 -17.29603 -16.83736 -16.51047 -15.09488 -14.95496 -14.64383 -14.44826 -14.05360 -13.57740 -13.27706 -12.84398 -12.63664 -12.49952 -12.03676 -11.87267 -11.77473 -11.57239 -11.30797 -11.21435 -11.00914 -10.86116 -10.77687 -10.66160 -10.49410 -10.07601 -9.76203 -9.39015 -8.55003 -7.55938 -6.14494 -4.16534 1.50417 2.18224 2.50982 3.26924 3.31571 3.34259 4.20537 4.26100 4.36396 4.58995 4.71923 4.81487 4.96094 5.22190 5.26464 5.30798 5.45416 5.50691 5.62113 5.73074 5.78967 5.85617 5.99790 6.07338 6.11146 6.28309 6.46957 6.70849 7.03152 7.15320 7.60608 7.83229 7.98047 8.32727 8.89735 8.90179 9.48306 10.96248 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.006231 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.540402 B = 4492.906044 C = 4861.954702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 C -0.160 4.160 4 N -0.293 5.293 5 N -0.104 5.104 6 N -0.088 5.088 7 N -0.309 5.309 8 C 0.211 3.789 9 C 0.127 3.873 10 N -0.536 5.536 11 C 0.035 3.965 12 C 0.195 3.805 13 C -0.511 4.511 14 H 0.064 0.936 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.021 0.979 31 H 0.078 0.922 32 H 0.048 0.952 33 H -0.002 1.002 34 H 0.032 0.968 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 5.106 4.314 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 C -0.218 4.218 4 N -0.096 5.096 5 N -0.090 5.090 6 N -0.082 5.082 7 N -0.159 5.159 8 C -0.068 4.068 9 C -0.005 4.005 10 N -0.262 5.262 11 C -0.113 4.113 12 C 0.070 3.930 13 C -0.550 4.550 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.016 0.984 34 H 0.050 0.950 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.482 5.727 5.475 13.140 hybrid contribution 0.957 -0.457 -1.322 1.695 sum -9.525 5.270 4.153 11.651 Atomic orbital electron populations 1.22185 0.92271 1.03421 1.04187 1.21900 0.95938 0.95171 0.83279 1.22126 1.03167 0.92865 1.03678 1.48662 1.33656 1.19808 1.07491 1.78687 1.20844 1.21716 0.87731 1.78526 1.07439 0.99406 1.22793 1.74996 1.19792 1.21339 0.99801 1.26217 0.94281 0.89306 0.97002 1.20588 0.94783 0.95246 0.89863 1.62228 0.99942 1.58558 1.05475 1.22278 0.96687 0.98746 0.93615 1.19787 0.96340 0.93765 0.83093 1.21052 1.11962 1.17009 1.04945 0.91832 1.24961 0.97595 0.95247 0.96566 1.69929 1.41123 1.28542 1.14044 0.86540 0.82772 0.80063 0.77938 1.20196 1.21271 1.20158 0.90895 0.89533 0.91770 0.85821 0.91209 0.90780 0.89699 0.91254 0.88787 0.96078 0.90353 0.93333 0.98408 0.94961 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.41 37.16 0.35 -1.05 16 2 C 0.14 1.55 3.63 -67.93 -0.25 1.30 16 3 C -0.16 -1.68 9.41 37.16 0.35 -1.33 16 4 N -0.29 -4.37 3.06 -51.80 -0.16 -4.53 16 5 N -0.10 -1.72 13.04 60.35 0.79 -0.94 16 6 N -0.09 -1.63 13.43 60.35 0.81 -0.82 16 7 N -0.31 -5.74 11.66 32.70 0.38 -5.36 16 8 C 0.21 3.51 6.75 -155.43 -1.05 2.47 16 9 C 0.13 2.09 5.14 -4.97 -0.03 2.07 16 10 N -0.54 -10.70 4.74 -245.82 -1.17 -11.87 16 11 C 0.04 0.69 9.18 60.06 0.55 1.25 16 12 C 0.19 4.62 4.72 -4.98 -0.02 4.60 16 13 C -0.51 -13.48 8.46 -34.44 -0.29 -13.77 16 14 H 0.06 1.68 7.12 -52.48 -0.37 1.30 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -25.25 13.29 55.43 0.74 -24.51 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.12 1.36 6.77 -51.93 -0.35 1.00 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 29 H 0.09 1.35 6.97 -51.93 -0.36 0.98 16 30 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 32 H 0.05 0.93 6.75 -51.93 -0.35 0.58 16 33 H 0.00 -0.05 8.12 -51.93 -0.42 -0.47 16 34 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -30.01 296.08 -4.79 -34.80 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -5.14 Total: -3.97 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.48 Total: -3.00 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 1.39 Total: -48.03 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.01 -4.79 -34.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177186174.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.228 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds