Wall clock time and date at job start Mon Mar 30 2020 03:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47387 * 2 1 4 4 N 1.46493 * 109.47310 * 120.00064 * 2 1 3 5 5 N 1.29021 * 126.43842 * 299.68774 * 4 2 1 6 6 N 1.28737 * 108.80997 * 180.26073 * 5 4 2 7 7 N 1.28838 * 109.39886 * 359.97438 * 6 5 4 8 8 C 1.31070 * 107.99206 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.66569 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.46653 * 270.03903 * 9 8 7 11 11 C 1.46899 * 111.00288 * 66.04554 * 10 9 8 12 12 C 1.46900 * 110.99741 * 189.99455 * 10 9 8 13 13 C 1.50697 * 109.47300 * 169.99952 * 12 10 9 14 14 H 1.08004 * 119.99902 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00178 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00230 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47073 * 59.99774 * 17 15 13 19 19 H 1.48498 * 109.47535 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47480 * 299.99739 * 17 15 13 21 21 H 1.09002 * 109.46906 * 300.00293 * 1 2 3 22 22 H 1.09005 * 109.47036 * 59.99463 * 1 2 3 23 23 H 1.08994 * 109.47169 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47002 * 240.00657 * 2 1 3 25 25 H 1.09002 * 109.46883 * 59.99688 * 3 2 1 26 26 H 1.08998 * 109.46886 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46800 * 300.00159 * 3 2 1 28 28 H 1.09000 * 109.47074 * 30.03310 * 9 8 7 29 29 H 1.08993 * 109.47120 * 150.03766 * 9 8 7 30 30 H 1.09008 * 109.46999 * 59.99620 * 11 10 9 31 31 H 1.08999 * 109.47374 * 179.97438 * 11 10 9 32 32 H 1.09004 * 109.47001 * 299.99726 * 11 10 9 33 33 H 1.08998 * 109.47536 * 290.00578 * 12 10 9 34 34 H 1.09007 * 109.46844 * 50.00023 * 12 10 9 35 35 H 0.96992 * 120.00428 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7892 -0.3566 2.4211 6 7 2.3847 -1.1929 3.1977 7 7 3.0019 -2.0725 2.4867 8 6 2.7950 -1.7896 1.2237 9 6 3.3242 -2.5475 0.0334 10 7 4.6276 -1.9948 -0.3589 11 6 5.6354 -2.2326 0.6831 12 6 5.0651 -2.5435 -1.6494 13 6 6.2708 -1.7818 -2.1363 14 1 6.6722 -0.9714 -1.5459 15 6 6.8615 -2.1195 -3.3355 16 7 6.3731 -3.1067 -4.0542 17 14 8.3564 -1.1758 -3.9387 18 1 9.4557 -1.3044 -2.9485 19 1 8.7987 -1.7303 -5.2433 20 1 8.0039 0.2573 -4.1035 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9564 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.4393 -3.5995 0.2944 29 1 2.6248 -2.4536 -0.7973 30 1 5.7448 -3.3051 0.8448 31 1 6.5908 -1.8139 0.3669 32 1 5.3185 -1.7557 1.6107 33 1 5.3244 -3.5952 -1.5279 34 1 4.2583 -2.4499 -2.3763 35 1 6.7888 -3.3445 -4.8976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177186174.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:00 Heat of formation + Delta-G solvation = 93.935135 kcal Electronic energy + Delta-G solvation = -17460.476193 eV Core-core repulsion = 14723.506587 eV Total energy + Delta-G solvation = -2736.969606 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.21179 -38.58681 -37.88005 -34.89290 -33.71512 -33.12961 -29.60695 -28.69022 -28.29049 -26.23623 -25.61716 -23.72597 -22.47183 -21.56111 -18.61830 -18.28516 -18.12321 -16.81758 -16.30529 -16.11684 -15.83251 -15.56006 -14.64575 -14.49203 -14.14527 -14.00420 -13.80890 -13.33140 -13.23383 -12.99868 -12.93426 -12.71469 -12.65122 -12.61395 -12.35173 -12.17455 -12.11555 -11.92276 -11.72538 -11.40651 -11.08860 -10.58559 -9.23434 -8.19243 -6.27647 0.21381 1.04269 1.13944 1.44965 1.45699 1.53759 2.41755 2.88521 3.14629 3.20887 3.36459 3.63044 3.77989 3.95071 4.23056 4.35276 4.37202 4.48482 4.55360 4.63706 4.64702 4.68346 4.74753 4.89556 5.04009 5.17599 5.18059 5.18623 5.24029 5.34787 5.63497 5.98506 6.13922 6.45668 6.85773 7.41460 7.55997 8.91195 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.006231 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.540402 B = 4492.906044 C = 4861.954702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 C -0.156 4.156 4 N -0.281 5.281 5 N -0.098 5.098 6 N -0.113 5.113 7 N -0.328 5.328 8 C 0.205 3.795 9 C 0.131 3.869 10 N -0.538 5.538 11 C 0.044 3.956 12 C 0.210 3.790 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.011 3.989 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.268 1.268 21 H 0.068 0.932 22 H 0.117 0.883 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.053 0.947 33 H -0.026 1.026 34 H 0.026 0.974 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 6.183 3.662 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 C -0.214 4.214 4 N -0.084 5.084 5 N -0.085 5.085 6 N -0.106 5.106 7 N -0.179 5.179 8 C -0.073 4.073 9 C 0.000 4.000 10 N -0.263 5.263 11 C -0.105 4.105 12 C 0.084 3.916 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.188 4.188 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.193 1.193 21 H 0.087 0.913 22 H 0.135 0.865 23 H 0.082 0.918 24 H 0.147 0.853 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.072 0.928 33 H -0.008 1.008 34 H 0.044 0.956 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.172 6.820 4.834 13.953 hybrid contribution 1.100 -0.758 -1.112 1.738 sum -10.072 6.062 3.722 12.330 Atomic orbital electron populations 1.22189 0.89832 1.03816 1.05475 1.22391 0.97879 0.95263 0.81882 1.22130 1.01475 0.92596 1.05190 1.49015 1.32445 1.19062 1.07913 1.78617 1.20342 1.21226 0.88285 1.78511 1.08512 1.00069 1.23492 1.74924 1.20332 1.21941 1.00702 1.26067 0.94879 0.89995 0.96404 1.20621 0.93403 0.95264 0.90745 1.62075 1.01271 1.58691 1.04272 1.22162 0.96082 0.98700 0.93557 1.19454 0.95398 0.92088 0.84620 1.21359 1.12864 1.16998 1.05065 0.92239 1.25729 1.00247 0.96048 0.96797 1.70029 1.42504 1.29881 1.14460 0.85568 0.79432 0.79034 0.77379 1.19890 1.20923 1.19342 0.91323 0.86485 0.91830 0.85324 0.91263 0.93305 0.86662 0.90822 0.86314 0.95980 0.91805 0.92831 1.00836 0.95569 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.41 71.98 0.68 -1.54 16 2 C 0.13 2.53 3.63 44.99 0.16 2.69 16 3 C -0.16 -2.94 9.41 71.98 0.68 -2.26 16 4 N -0.28 -7.98 3.06 -317.81 -0.97 -8.95 16 5 N -0.10 -3.16 13.04 37.02 0.48 -2.68 16 6 N -0.11 -4.12 13.43 37.01 0.50 -3.62 16 7 N -0.33 -12.02 11.66 -50.45 -0.59 -12.61 16 8 C 0.21 6.64 6.75 138.13 0.93 7.57 16 9 C 0.13 4.16 5.14 85.56 0.44 4.60 16 10 N -0.54 -21.15 4.74 -931.63 -4.42 -25.57 16 11 C 0.04 1.71 9.18 127.69 1.17 2.88 16 12 C 0.21 9.96 4.72 85.56 0.40 10.36 16 13 C -0.52 -27.55 8.46 25.60 0.22 -27.33 16 14 H 0.06 3.12 7.12 -2.91 -0.02 3.10 16 15 C 0.01 0.57 5.46 84.65 0.46 1.03 16 16 N -0.93 -52.15 13.29 21.45 0.28 -51.86 16 17 Si 0.96 42.07 29.54 68.60 2.03 44.09 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.13 2.50 6.77 -2.38 -0.02 2.49 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 29 H 0.12 3.17 6.97 -2.39 -0.02 3.15 16 30 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 2.67 6.76 -2.39 -0.02 2.65 16 32 H 0.05 2.04 6.75 -2.39 -0.02 2.03 16 33 H -0.03 -1.36 8.12 -2.39 -0.02 -1.38 16 34 H 0.03 1.27 7.93 -2.38 -0.02 1.25 16 35 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -63.31 296.08 3.53 -59.79 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.07 Total: 3.40 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.14 Total: -2.00 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.72 Total: -105.29 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -63.31 3.53 -59.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177186174.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.723 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds