Wall clock time and date at job start Mon Mar 30 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99468 * 2 1 4 4 O 1.20824 * 120.00322 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99697 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.89815 * 41.08380 * 5 3 2 7 7 C 1.53369 * 109.91167 * 279.99950 * 5 3 2 8 8 H 1.08994 * 111.42867 * 94.99023 * 7 5 3 9 9 C 1.53444 * 110.79535 * 330.34231 * 7 5 3 10 10 C 1.54061 * 104.83341 * 216.92865 * 9 7 5 11 11 C 1.53616 * 105.89620 * 29.47048 * 10 9 7 12 12 C 1.53891 * 107.48465 * 342.14389 * 11 10 9 13 13 H 1.08995 * 112.01920 * 236.43325 * 12 11 10 14 14 C 1.54016 * 108.15373 * 111.14596 * 12 11 10 15 15 N 1.46470 * 108.41821 * 234.47574 * 14 12 11 16 16 C 1.36942 * 125.27745 * 177.53074 * 15 14 12 17 17 H 1.07998 * 120.00251 * 180.02562 * 16 15 14 18 18 C 1.38809 * 119.99575 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46849 * 90.00381 * 20 18 16 22 22 H 1.48503 * 109.47467 * 210.00256 * 20 18 16 23 23 H 1.48499 * 109.47228 * 330.00777 * 20 18 16 24 24 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47240 * 299.99776 * 1 2 3 26 26 H 1.08999 * 109.47752 * 60.00094 * 1 2 3 27 27 H 1.08998 * 110.36922 * 98.09343 * 9 7 5 28 28 H 1.08998 * 110.36924 * 335.76277 * 9 7 5 29 29 H 1.09004 * 110.16585 * 270.36665 * 10 9 7 30 30 H 1.09003 * 110.22950 * 148.60918 * 10 9 7 31 31 H 1.09002 * 109.86644 * 101.65989 * 11 10 9 32 32 H 1.08999 * 109.86539 * 222.63073 * 11 10 9 33 33 H 1.09004 * 109.58784 * 114.76038 * 14 12 11 34 34 H 1.08993 * 109.68597 * 354.25813 * 14 12 11 35 35 H 0.97002 * 119.99547 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9769 0.5230 -0.6745 7 6 4.1015 1.0520 1.4193 8 1 4.3752 0.0097 1.5825 9 6 3.0887 1.5358 2.4655 10 6 3.9455 2.1451 3.5916 11 6 5.2177 2.6746 2.9128 12 6 5.3220 1.9984 1.5344 13 1 6.2668 1.4697 1.4090 14 6 5.0818 3.0701 0.4546 15 7 4.0000 2.6117 -0.4199 16 6 3.4748 3.3213 -1.4667 17 1 2.6749 2.8999 -2.0575 18 6 3.9705 4.5823 -1.7685 19 7 4.9456 5.0956 -1.0487 20 14 3.2546 5.5500 -3.1968 21 1 2.1240 6.3827 -2.7133 22 1 4.3036 6.4276 -3.7755 23 1 2.7669 4.6093 -4.2372 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.5050 0.6970 2.8446 28 1 2.4323 2.2928 2.0365 29 1 4.2015 1.3802 4.3249 30 1 3.4087 2.9623 4.0735 31 1 5.1499 3.7557 2.7908 32 1 6.0908 2.4240 3.5153 33 1 5.9916 3.2110 -0.1291 34 1 4.7990 4.0106 0.9273 35 1 5.2922 5.9766 -1.2599 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191189797.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:14 Heat of formation + Delta-G solvation = -63.050524 kcal Electronic energy + Delta-G solvation = -18417.543740 eV Core-core repulsion = 15609.181223 eV Total energy + Delta-G solvation = -2808.362518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20183 -38.45789 -35.67544 -34.35316 -31.75090 -30.13325 -28.37419 -27.45843 -25.39016 -24.45321 -21.78429 -20.40159 -19.36809 -18.84010 -17.06718 -16.69562 -15.75472 -15.62462 -15.45090 -14.44117 -14.02093 -13.63309 -13.26678 -13.04108 -12.44777 -12.24164 -12.02678 -11.62315 -11.29858 -11.02266 -10.91454 -10.80750 -10.68564 -10.46183 -10.29733 -10.14989 -10.08210 -9.88700 -9.77498 -9.53609 -9.31304 -8.54608 -6.90952 -5.71330 -3.04713 3.08313 3.33781 3.47011 3.48738 3.50310 4.50627 4.91243 5.04010 5.16631 5.42626 5.48221 5.50210 5.53421 5.63420 5.74627 5.83747 5.94467 5.99402 6.02831 6.13468 6.15185 6.20374 6.34799 6.47973 6.57934 6.65039 6.84696 6.90515 7.09101 7.57182 7.62756 7.85979 8.23256 8.64291 9.20981 9.78280 10.37311 11.39426 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.011808 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.461396 B = 2370.630759 C = 3428.668507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.442 3.558 4 O -0.483 6.483 5 C 0.179 3.821 6 H 0.062 0.938 7 C -0.086 4.086 8 H 0.083 0.917 9 C -0.126 4.126 10 C -0.115 4.115 11 C -0.113 4.113 12 C -0.114 4.114 13 H 0.078 0.922 14 C 0.182 3.818 15 N -0.569 5.569 16 C -0.217 4.217 17 H 0.076 0.924 18 C -0.004 4.004 19 N -0.920 5.920 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -9.409 6.739 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C 0.281 3.719 4 O -0.367 6.367 5 C 0.068 3.932 6 H 0.079 0.921 7 C -0.105 4.105 8 H 0.102 0.898 9 C -0.164 4.164 10 C -0.153 4.153 11 C -0.151 4.151 12 C -0.133 4.133 13 H 0.097 0.903 14 C 0.058 3.942 15 N -0.293 5.293 16 C -0.345 4.345 17 H 0.094 0.906 18 C -0.200 4.200 19 N -0.568 5.568 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.207 1.207 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.312 -8.839 6.623 11.285 hybrid contribution -0.794 0.653 -0.752 1.274 sum -3.106 -8.186 5.871 10.542 Atomic orbital electron populations 1.23054 0.78688 1.02347 1.01898 1.86601 1.21836 1.35733 1.85066 1.25685 0.93437 0.80797 0.71988 1.90637 1.66547 1.36119 1.43401 1.20665 0.84876 0.91968 0.95700 0.92116 1.22244 0.95864 0.99461 0.92929 0.89820 1.22254 0.97947 1.00365 0.95808 1.22012 0.96392 0.99502 0.97392 1.22156 0.96669 1.00963 0.95301 1.22845 0.96681 0.97006 0.96811 0.90340 1.21379 0.91012 0.93025 0.88785 1.44260 1.38317 1.13504 1.33250 1.18976 1.14239 0.97644 1.03615 0.90618 1.24760 0.98547 0.97098 0.99552 1.69975 1.28505 1.17457 1.40817 0.86075 0.78007 0.79882 0.81529 1.21542 1.21632 1.20704 0.89192 0.92721 0.92587 0.92378 0.90314 0.92530 0.92251 0.91086 0.92731 0.93527 0.92359 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.78 10.57 -39.26 -0.41 -7.20 16 3 C 0.44 9.48 5.11 36.01 0.18 9.66 16 4 O -0.48 -11.99 14.00 -18.75 -0.26 -12.25 16 5 C 0.18 3.83 3.59 -68.81 -0.25 3.58 16 6 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 7 C -0.09 -1.52 3.55 -89.22 -0.32 -1.84 16 8 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 9 C -0.13 -2.19 5.40 -25.95 -0.14 -2.33 16 10 C -0.12 -1.76 6.78 -25.86 -0.18 -1.93 16 11 C -0.11 -1.85 6.36 -25.95 -0.16 -2.01 16 12 C -0.11 -2.10 4.00 -88.64 -0.35 -2.45 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.18 4.37 4.98 -3.53 -0.02 4.35 16 15 N -0.57 -14.67 3.08 -166.04 -0.51 -15.18 16 16 C -0.22 -6.21 8.74 -15.06 -0.13 -6.34 16 17 H 0.08 2.20 7.35 -52.49 -0.39 1.81 16 18 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 19 N -0.92 -27.07 10.23 55.49 0.57 -26.50 16 20 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 26 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.66 6.15 -51.93 -0.32 1.34 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.28 6.95 -51.93 -0.36 0.92 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 1.22 7.54 -51.93 -0.39 0.83 16 34 H 0.06 1.57 6.03 -51.93 -0.31 1.25 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 277.05 15.07 4.18 4.18 Total: -1.00 -31.79 277.05 -7.00 -38.78 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.13 Total: -1.84 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.39 Total: 2.05 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.06 Total: -41.68 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.68 Total: -19.45 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.79 -7.00 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191189797.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.266 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds