Wall clock time and date at job start Mon Mar 30 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99468 * 2 1 4 4 O 1.20824 * 120.00322 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99697 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.89815 * 41.08380 * 5 3 2 7 7 C 1.53369 * 109.91167 * 279.99950 * 5 3 2 8 8 H 1.08994 * 111.42867 * 94.99023 * 7 5 3 9 9 C 1.53444 * 110.79535 * 330.34231 * 7 5 3 10 10 C 1.54061 * 104.83341 * 216.92865 * 9 7 5 11 11 C 1.53616 * 105.89620 * 29.47048 * 10 9 7 12 12 C 1.53891 * 107.48465 * 342.14389 * 11 10 9 13 13 H 1.08995 * 112.01920 * 236.43325 * 12 11 10 14 14 C 1.54016 * 108.15373 * 111.14596 * 12 11 10 15 15 N 1.46470 * 108.41821 * 234.47574 * 14 12 11 16 16 C 1.36942 * 125.27745 * 177.53074 * 15 14 12 17 17 H 1.07998 * 120.00251 * 180.02562 * 16 15 14 18 18 C 1.38809 * 119.99575 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46849 * 90.00381 * 20 18 16 22 22 H 1.48503 * 109.47467 * 210.00256 * 20 18 16 23 23 H 1.48499 * 109.47228 * 330.00777 * 20 18 16 24 24 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47240 * 299.99776 * 1 2 3 26 26 H 1.08999 * 109.47752 * 60.00094 * 1 2 3 27 27 H 1.08998 * 110.36922 * 98.09343 * 9 7 5 28 28 H 1.08998 * 110.36924 * 335.76277 * 9 7 5 29 29 H 1.09004 * 110.16585 * 270.36665 * 10 9 7 30 30 H 1.09003 * 110.22950 * 148.60918 * 10 9 7 31 31 H 1.09002 * 109.86644 * 101.65989 * 11 10 9 32 32 H 1.08999 * 109.86539 * 222.63073 * 11 10 9 33 33 H 1.09004 * 109.58784 * 114.76038 * 14 12 11 34 34 H 1.08993 * 109.68597 * 354.25813 * 14 12 11 35 35 H 0.97002 * 119.99547 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9769 0.5230 -0.6745 7 6 4.1015 1.0520 1.4193 8 1 4.3752 0.0097 1.5825 9 6 3.0887 1.5358 2.4655 10 6 3.9455 2.1451 3.5916 11 6 5.2177 2.6746 2.9128 12 6 5.3220 1.9984 1.5344 13 1 6.2668 1.4697 1.4090 14 6 5.0818 3.0701 0.4546 15 7 4.0000 2.6117 -0.4199 16 6 3.4748 3.3213 -1.4667 17 1 2.6749 2.8999 -2.0575 18 6 3.9705 4.5823 -1.7685 19 7 4.9456 5.0956 -1.0487 20 14 3.2546 5.5500 -3.1968 21 1 2.1240 6.3827 -2.7133 22 1 4.3036 6.4276 -3.7755 23 1 2.7669 4.6093 -4.2372 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.5050 0.6970 2.8446 28 1 2.4323 2.2928 2.0365 29 1 4.2015 1.3802 4.3249 30 1 3.4087 2.9623 4.0735 31 1 5.1499 3.7557 2.7908 32 1 6.0908 2.4240 3.5153 33 1 5.9916 3.2110 -0.1291 34 1 4.7990 4.0106 0.9273 35 1 5.2922 5.9766 -1.2599 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191189797.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:14 Heat of formation + Delta-G solvation = -82.956825 kcal Electronic energy + Delta-G solvation = -18418.406942 eV Core-core repulsion = 15609.181223 eV Total energy + Delta-G solvation = -2809.225720 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82715 -39.99838 -37.29349 -36.15500 -33.65493 -31.75803 -30.11512 -28.74967 -26.89506 -26.39925 -23.50172 -21.93642 -20.93547 -20.36998 -19.01878 -18.31504 -17.30608 -17.22219 -17.05934 -16.34357 -15.42545 -15.35427 -14.77111 -14.66230 -14.12128 -13.92652 -13.64880 -13.11370 -13.01033 -12.82517 -12.73930 -12.51002 -12.16467 -11.97749 -11.90088 -11.84367 -11.66008 -11.52262 -11.32329 -11.18595 -11.00034 -10.65164 -8.97173 -7.88217 -5.23425 1.38085 1.40285 1.42030 1.49733 1.89068 2.45069 3.32028 3.48993 3.55381 3.78364 3.80224 4.17138 4.32971 4.37255 4.37524 4.48039 4.52197 4.65496 4.68344 4.72524 4.81581 4.85285 4.93984 5.07761 5.23891 5.32267 5.42033 5.42158 5.52727 5.56201 5.74639 5.79836 6.17450 6.99827 7.07705 7.70679 8.28836 9.20444 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.011808 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.461396 B = 2370.630759 C = 3428.668507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.450 3.550 4 O -0.526 6.526 5 C 0.164 3.836 6 H 0.075 0.925 7 C -0.077 4.077 8 H 0.129 0.871 9 C -0.126 4.126 10 C -0.108 4.108 11 C -0.111 4.111 12 C -0.105 4.105 13 H 0.106 0.894 14 C 0.191 3.809 15 N -0.593 5.593 16 C -0.224 4.224 17 H 0.064 0.936 18 C -0.060 4.060 19 N -0.944 5.944 20 Si 0.972 3.028 21 H -0.293 1.293 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.138 0.862 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.012 0.988 34 H 0.017 0.983 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -12.028 7.967 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.292 3.708 4 O -0.413 6.413 5 C 0.055 3.945 6 H 0.092 0.908 7 C -0.096 4.096 8 H 0.147 0.853 9 C -0.163 4.163 10 C -0.146 4.146 11 C -0.149 4.149 12 C -0.124 4.124 13 H 0.124 0.876 14 C 0.067 3.933 15 N -0.317 5.317 16 C -0.353 4.353 17 H 0.082 0.918 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.800 3.200 21 H -0.221 1.221 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.156 0.844 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.502 -11.518 7.857 14.166 hybrid contribution -0.840 1.354 -1.141 1.960 sum -3.342 -10.165 6.716 12.633 Atomic orbital electron populations 1.23438 0.76091 1.05375 1.01628 1.86539 1.24153 1.33356 1.84285 1.25340 0.93475 0.81035 0.70968 1.90626 1.67423 1.37757 1.45535 1.20957 0.85150 0.90015 0.98388 0.90777 1.22377 0.95150 1.01633 0.90406 0.85344 1.22222 0.97746 1.00044 0.96294 1.22009 0.95046 1.00335 0.97189 1.22124 0.98992 0.99021 0.94738 1.22818 0.98360 0.95617 0.95623 0.87568 1.21133 0.89027 0.93753 0.89381 1.44405 1.39116 1.14932 1.33253 1.19098 1.13539 0.98138 1.04489 0.91807 1.25518 0.99395 0.98181 1.02195 1.70179 1.29630 1.17360 1.42108 0.85186 0.77111 0.78567 0.79125 1.22074 1.21053 1.19667 0.84425 0.92549 0.93473 0.89835 0.94949 0.88662 0.92634 0.94098 0.89236 0.96966 0.96497 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.37 -12.44 10.57 -51.41 -0.54 -12.98 16 3 C 0.45 19.08 5.11 71.24 0.36 19.44 16 4 O -0.53 -26.65 14.00 21.97 0.31 -26.34 16 5 C 0.16 6.90 3.59 44.34 0.16 7.06 16 6 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 7 C -0.08 -2.51 3.55 -9.88 -0.04 -2.55 16 8 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 9 C -0.13 -4.06 5.40 31.10 0.17 -3.89 16 10 C -0.11 -2.97 6.78 31.16 0.21 -2.76 16 11 C -0.11 -3.41 6.36 31.10 0.20 -3.21 16 12 C -0.11 -3.68 4.00 -9.51 -0.04 -3.72 16 13 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 14 C 0.19 9.50 4.98 86.73 0.43 9.93 16 15 N -0.59 -31.37 3.08 -679.24 -2.09 -33.46 16 16 C -0.22 -13.27 8.74 84.03 0.73 -12.54 16 17 H 0.06 3.83 7.35 -2.91 -0.02 3.81 16 18 C -0.06 -3.58 5.48 84.86 0.47 -3.11 16 19 N -0.94 -58.15 10.23 21.65 0.22 -57.93 16 20 Si 0.97 48.68 29.55 68.60 2.03 50.71 16 21 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 22 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 24 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.48 8.13 -2.38 -0.02 1.46 16 26 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.03 1.35 6.15 -2.39 -0.01 1.34 16 29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.01 0.67 7.54 -2.38 -0.02 0.65 16 34 H 0.02 0.96 6.03 -2.39 -0.01 0.95 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -73.53 277.05 4.85 -68.68 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.07 Total: 4.73 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 3.86 Total: 6.59 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -1.87 Total: -91.39 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.24 Total: -39.33 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -73.53 4.85 -68.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191189797.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.274 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds