Wall clock time and date at job start Mon Mar 30 2020 03:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47054 * 2 1 4 4 C 1.46500 * 120.00350 * 270.00191 * 3 2 1 5 5 C 1.38848 * 119.99746 * 89.99797 * 3 2 1 6 6 N 1.30629 * 126.38733 * 0.03009 * 5 3 2 7 7 O 1.21294 * 110.12719 * 179.97438 * 6 5 3 8 8 C 1.33649 * 109.97714 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.45953 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47118 * 270.02331 * 9 8 7 11 11 H 1.09007 * 109.46376 * 304.99830 * 10 9 8 12 12 C 1.52998 * 109.47200 * 64.99794 * 10 9 8 13 13 C 1.50701 * 109.47211 * 185.00261 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 N 1.31047 * 107.07880 * 0.23336 * 8 7 6 22 22 H 1.08997 * 109.47885 * 59.99654 * 1 2 3 23 23 H 1.09009 * 109.46842 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47479 * 299.99133 * 1 2 3 25 25 H 1.08999 * 109.47539 * 240.00428 * 2 1 3 26 26 H 1.09006 * 109.47666 * 120.00272 * 2 1 3 27 27 H 1.08998 * 109.46825 * 269.99681 * 4 3 2 28 28 H 1.08995 * 109.46861 * 30.00189 * 4 3 2 29 29 H 1.08998 * 109.46772 * 150.00000 * 4 3 2 30 30 H 1.08998 * 109.47482 * 150.02254 * 9 8 7 31 31 H 1.09000 * 109.47171 * 30.01663 * 9 8 7 32 32 H 1.09004 * 109.46783 * 180.02562 * 12 10 9 33 33 H 1.09005 * 109.46870 * 300.00189 * 12 10 9 34 34 H 1.08998 * 109.47156 * 60.00128 * 12 10 9 35 35 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 2.2496 2.0357 1.2025 6 7 2.0757 1.5422 2.3994 7 8 2.3680 2.3683 3.2380 8 6 2.7667 3.4984 2.6463 9 6 3.2127 4.7616 3.3365 10 6 2.0033 5.6689 3.5711 11 1 1.4941 5.8476 2.6240 12 6 1.0399 4.9922 4.5483 13 6 2.4649 6.9820 4.1489 14 1 3.5157 7.1521 4.3310 15 6 1.5450 7.9636 4.4508 16 7 0.2654 7.7563 4.2294 17 14 2.1164 9.5883 5.1743 18 1 3.0502 10.2503 4.2282 19 1 0.9421 10.4671 5.4064 20 1 2.8112 9.3393 6.4629 21 7 2.6912 3.3028 1.3527 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8901 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.2918 1.9007 -1.5833 28 1 1.5816 1.6879 -2.0283 29 1 2.0954 3.1411 -1.1382 30 1 3.9399 5.2798 2.7115 31 1 3.6696 4.5106 4.2938 32 1 0.1781 5.6384 4.7150 33 1 0.7061 4.0424 4.1303 34 1 1.5491 4.8134 5.4953 35 1 -0.3818 8.4468 4.4421 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233993369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:06 Heat of formation + Delta-G solvation = 66.347734 kcal Electronic energy + Delta-G solvation = -17180.676829 eV Core-core repulsion = 14410.218193 eV Total energy + Delta-G solvation = -2770.458637 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.71012 -37.59451 -35.60903 -34.30294 -32.25343 -30.84258 -30.43988 -26.76412 -26.17366 -25.15881 -23.65795 -22.60401 -20.66756 -19.54083 -17.47094 -17.30854 -16.26205 -15.84290 -15.14065 -14.65373 -14.43224 -13.78569 -13.64971 -13.31498 -12.78594 -12.64643 -12.28143 -11.92300 -11.73365 -11.58305 -11.42454 -11.18428 -11.14762 -10.92676 -10.70235 -10.33654 -10.21108 -10.12576 -9.84923 -9.25508 -8.93445 -8.37960 -7.82320 -6.02891 -4.11336 1.88513 2.70335 3.02113 3.31492 3.36444 3.38156 3.64544 4.39643 4.49669 4.76975 5.01473 5.11718 5.28464 5.29961 5.40294 5.54856 5.63331 5.75909 5.82387 6.02804 6.07641 6.13145 6.26364 6.53678 6.59383 6.88598 7.05729 7.09726 7.25718 7.35910 7.66322 7.88197 8.07418 8.32584 8.91032 8.95168 9.54026 11.03258 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043799 B = 0.005083 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.131948 B = 5507.037614 C = 5537.386579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.590 5.590 4 C 0.110 3.890 5 C 0.420 3.580 6 N -0.451 5.451 7 O 0.051 5.949 8 C 0.236 3.764 9 C -0.027 4.027 10 C 0.051 3.949 11 H 0.034 0.966 12 C -0.141 4.141 13 C -0.517 4.517 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 N -0.524 5.524 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.031 0.969 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -11.831 -7.694 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.033 4.033 5 C 0.060 3.940 6 N -0.182 5.182 7 O 0.009 5.991 8 C 0.017 3.983 9 C -0.066 4.066 10 C 0.032 3.968 11 H 0.052 0.948 12 C -0.199 4.199 13 C -0.555 4.555 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.264 5.264 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.051 0.949 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.436 -12.433 -7.989 14.978 hybrid contribution 0.136 0.971 0.373 1.049 sum 2.571 -11.462 -7.616 14.000 Atomic orbital electron populations 1.22218 0.96275 1.01910 1.02617 1.21342 0.94140 0.80643 1.02736 1.45116 1.73297 1.13134 1.00298 1.21547 1.00150 0.98418 0.83155 1.22047 0.96628 0.87379 0.87951 1.74706 1.30580 1.15028 0.97879 1.85241 1.61848 1.18974 1.33070 1.29164 0.90854 0.91504 0.86821 1.20816 1.01962 0.85010 0.98798 1.18721 0.89487 0.91961 0.96673 0.94796 1.21881 1.02459 0.97179 0.98352 1.20998 0.93581 0.98161 1.42781 0.92178 1.24945 0.94850 0.98581 0.95451 1.69885 1.00846 1.33997 1.47860 0.86602 0.78086 0.83316 0.79658 1.20190 1.21336 1.20165 1.71855 1.25425 1.13105 1.16009 0.92528 0.91653 0.92204 0.90460 0.90498 0.93429 0.91497 0.90480 0.88403 0.89261 0.89618 0.97580 0.94944 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.24 37.15 0.38 -1.49 16 2 C 0.13 1.55 6.28 -4.04 -0.03 1.53 16 3 N -0.59 -8.71 2.98 -185.19 -0.55 -9.26 16 4 C 0.11 1.31 10.60 59.85 0.63 1.95 16 5 C 0.42 7.86 8.33 -321.18 -2.68 5.18 16 6 N -0.45 -8.85 11.55 28.63 0.33 -8.52 16 7 O 0.05 1.03 10.73 18.09 0.19 1.22 16 8 C 0.24 4.74 6.91 -12.99 -0.09 4.65 16 9 C -0.03 -0.53 5.26 -27.88 -0.15 -0.68 16 10 C 0.05 1.24 2.29 -91.77 -0.21 1.03 16 11 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.14 -3.40 8.78 37.16 0.33 -3.07 16 13 C -0.52 -13.52 8.56 -34.44 -0.29 -13.81 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -25.04 11.31 55.43 0.63 -24.41 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 N -0.52 -10.55 10.95 -12.67 -0.14 -10.69 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.66 8.07 -51.93 -0.42 0.25 16 26 H 0.08 0.96 7.69 -51.93 -0.40 0.57 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.08 1.05 7.68 -51.93 -0.40 0.66 16 30 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 33 H 0.01 0.12 6.93 -51.93 -0.36 -0.24 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -29.74 296.63 -7.52 -37.26 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.23 Total: -2.60 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.20 Total: -3.10 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.27 Total: -52.88 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.19 Total: 1.22 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.74 -7.52 -37.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.605 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds