Wall clock time and date at job start Mon Mar 30 2020 03:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47054 * 2 1 4 4 C 1.46500 * 120.00350 * 270.00191 * 3 2 1 5 5 C 1.38848 * 119.99746 * 89.99797 * 3 2 1 6 6 N 1.30629 * 126.38733 * 0.03009 * 5 3 2 7 7 O 1.21294 * 110.12719 * 179.97438 * 6 5 3 8 8 C 1.33649 * 109.97714 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.45953 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47118 * 270.02331 * 9 8 7 11 11 H 1.09007 * 109.46376 * 304.99830 * 10 9 8 12 12 C 1.52998 * 109.47200 * 64.99794 * 10 9 8 13 13 C 1.50701 * 109.47211 * 185.00261 * 10 9 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 N 1.31047 * 107.07880 * 0.23336 * 8 7 6 22 22 H 1.08997 * 109.47885 * 59.99654 * 1 2 3 23 23 H 1.09009 * 109.46842 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47479 * 299.99133 * 1 2 3 25 25 H 1.08999 * 109.47539 * 240.00428 * 2 1 3 26 26 H 1.09006 * 109.47666 * 120.00272 * 2 1 3 27 27 H 1.08998 * 109.46825 * 269.99681 * 4 3 2 28 28 H 1.08995 * 109.46861 * 30.00189 * 4 3 2 29 29 H 1.08998 * 109.46772 * 150.00000 * 4 3 2 30 30 H 1.08998 * 109.47482 * 150.02254 * 9 8 7 31 31 H 1.09000 * 109.47171 * 30.01663 * 9 8 7 32 32 H 1.09004 * 109.46783 * 180.02562 * 12 10 9 33 33 H 1.09005 * 109.46870 * 300.00189 * 12 10 9 34 34 H 1.08998 * 109.47156 * 60.00128 * 12 10 9 35 35 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 2.2496 2.0357 1.2025 6 7 2.0757 1.5422 2.3994 7 8 2.3680 2.3683 3.2380 8 6 2.7667 3.4984 2.6463 9 6 3.2127 4.7616 3.3365 10 6 2.0033 5.6689 3.5711 11 1 1.4941 5.8476 2.6240 12 6 1.0399 4.9922 4.5483 13 6 2.4649 6.9820 4.1489 14 1 3.5157 7.1521 4.3310 15 6 1.5450 7.9636 4.4508 16 7 0.2654 7.7563 4.2294 17 14 2.1164 9.5883 5.1743 18 1 3.0502 10.2503 4.2282 19 1 0.9421 10.4671 5.4064 20 1 2.8112 9.3393 6.4629 21 7 2.6912 3.3028 1.3527 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8901 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.2918 1.9007 -1.5833 28 1 1.5816 1.6879 -2.0283 29 1 2.0954 3.1411 -1.1382 30 1 3.9399 5.2798 2.7115 31 1 3.6696 4.5106 4.2938 32 1 0.1781 5.6384 4.7150 33 1 0.7061 4.0424 4.1303 34 1 1.5491 4.8134 5.4953 35 1 -0.3818 8.4468 4.4421 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233993369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:05 Heat of formation + Delta-G solvation = 49.530491 kcal Electronic energy + Delta-G solvation = -17181.406080 eV Core-core repulsion = 14410.218193 eV Total energy + Delta-G solvation = -2771.187887 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.20158 -38.75859 -37.39769 -35.81681 -34.02371 -32.16533 -31.80804 -28.35372 -27.49222 -27.12709 -24.78684 -24.11572 -22.19576 -21.15930 -19.01204 -18.70834 -18.18025 -17.13237 -16.55610 -16.31942 -15.58611 -15.22207 -15.15151 -14.69287 -14.58883 -13.54517 -13.49723 -13.40949 -13.13075 -12.94747 -12.89236 -12.76911 -12.74099 -12.51624 -12.15422 -12.08787 -11.90810 -11.79609 -11.66967 -10.94076 -10.90986 -10.42553 -9.05824 -8.06829 -6.22017 0.34132 1.49174 1.50892 1.51202 1.57861 1.59022 2.09940 2.49281 3.06382 3.22927 3.66553 4.02046 4.21912 4.34600 4.45591 4.46085 4.47899 4.53840 4.64068 4.79487 4.82064 4.88290 4.90765 5.00778 5.08795 5.13605 5.23806 5.34047 5.62146 5.85930 5.97643 6.06562 6.10328 6.30194 6.88820 7.45922 7.47430 8.98950 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043799 B = 0.005083 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.131948 B = 5507.037614 C = 5537.386579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 N -0.588 5.588 4 C 0.106 3.894 5 C 0.415 3.585 6 N -0.465 5.465 7 O 0.040 5.960 8 C 0.231 3.769 9 C -0.015 4.015 10 C 0.052 3.948 11 H -0.005 1.005 12 C -0.129 4.129 13 C -0.529 4.529 14 H 0.073 0.927 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.291 1.291 20 H -0.266 1.266 21 N -0.539 5.539 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.023 0.977 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.009 0.991 34 H 0.043 0.957 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -12.522 -8.467 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.007 3.993 3 N -0.317 5.317 4 C -0.036 4.036 5 C 0.055 3.945 6 N -0.200 5.200 7 O 0.001 5.999 8 C 0.012 3.988 9 C -0.054 4.054 10 C 0.032 3.968 11 H 0.013 0.987 12 C -0.187 4.187 13 C -0.567 4.567 14 H 0.091 0.909 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.217 1.217 20 H -0.191 1.191 21 N -0.280 5.280 22 H 0.084 0.916 23 H 0.109 0.891 24 H 0.043 0.957 25 H 0.136 0.864 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.520 -13.139 -8.772 16.186 hybrid contribution -0.232 1.105 0.507 1.238 sum 3.288 -12.035 -8.265 14.965 Atomic orbital electron populations 1.22171 0.95795 1.03199 1.01226 1.21629 0.94472 0.79101 1.04104 1.45696 1.72171 1.14139 0.99656 1.21747 1.02090 0.97141 0.82630 1.22463 0.95848 0.87065 0.89153 1.74669 1.31911 1.15161 0.98242 1.85209 1.62171 1.19054 1.33457 1.29129 0.91036 0.91658 0.87025 1.20622 1.00153 0.84301 1.00329 1.18582 0.90902 0.92740 0.94577 0.98709 1.21714 1.01466 0.96561 0.98938 1.21417 0.94201 0.98856 1.42196 0.90932 1.25786 0.94880 1.02107 0.95964 1.70044 1.02007 1.34979 1.49107 0.85566 0.77501 0.79075 0.79235 1.19435 1.21689 1.19105 1.71840 1.25958 1.14052 1.16141 0.91643 0.89068 0.95741 0.86424 0.91733 0.91938 0.87964 0.92773 0.87285 0.86968 0.92516 0.97229 0.93769 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 10.24 71.98 0.74 -2.56 16 2 C 0.13 2.67 6.28 86.38 0.54 3.21 16 3 N -0.59 -16.42 2.98 -742.61 -2.22 -18.63 16 4 C 0.11 2.29 10.60 127.77 1.35 3.64 16 5 C 0.42 15.37 8.33 260.92 2.17 17.54 16 6 N -0.47 -18.25 11.55 -66.69 -0.77 -19.03 16 7 O 0.04 1.63 10.73 74.79 0.80 2.44 16 8 C 0.23 9.27 6.91 88.36 0.61 9.88 16 9 C -0.02 -0.59 5.26 29.85 0.16 -0.44 16 10 C 0.05 2.53 2.29 -11.54 -0.03 2.51 16 11 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 12 C -0.13 -6.30 8.78 71.98 0.63 -5.67 16 13 C -0.53 -27.47 8.56 25.60 0.22 -27.25 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.01 0.60 5.30 84.65 0.45 1.05 16 16 N -0.92 -53.01 11.31 21.45 0.24 -52.77 16 17 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 N -0.54 -21.70 10.95 -311.43 -3.41 -25.11 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.12 1.54 8.07 -2.39 -0.02 1.52 16 26 H 0.06 1.52 7.69 -2.38 -0.02 1.50 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 1.48 8.07 -2.39 -0.02 1.47 16 29 H 0.05 1.43 7.68 -2.39 -0.02 1.41 16 30 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 31 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 32 H 0.06 3.10 6.06 -2.38 -0.01 3.09 16 33 H 0.01 0.42 6.93 -2.38 -0.02 0.40 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -64.74 296.63 4.59 -60.16 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.07 Total: 6.93 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.85 Total: 1.92 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -6.16 Total: -115.55 kcal Atomic # 8 Polarization: 1.63 SS G_CDS: 0.80 Total: 2.44 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -64.74 4.59 -60.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.688 kcal (2) G-P(sol) polarization free energy of solvation -64.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds