Wall clock time and date at job start Mon Mar 30 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47091 * 2 1 4 4 C 1.46497 * 120.00530 * 269.99902 * 3 2 1 5 5 C 1.38852 * 119.99769 * 90.00165 * 3 2 1 6 6 N 1.30628 * 126.38622 * 0.02562 * 5 3 2 7 7 O 1.21297 * 110.12695 * 179.72268 * 6 5 3 8 8 C 1.33650 * 109.97558 * 0.40911 * 7 6 5 9 9 C 1.50695 * 126.45941 * 179.86288 * 8 7 6 10 10 H 1.09000 * 109.47521 * 179.68545 * 9 8 7 11 11 C 1.53008 * 109.47004 * 299.68533 * 9 8 7 12 12 C 1.52996 * 109.47310 * 59.68315 * 9 8 7 13 13 C 1.50702 * 109.47159 * 174.99934 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 N 1.31044 * 107.07760 * 359.59944 * 8 7 6 22 22 H 1.08997 * 109.47645 * 59.99863 * 1 2 3 23 23 H 1.09000 * 109.47485 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47503 * 299.99849 * 1 2 3 25 25 H 1.08998 * 109.47318 * 240.00628 * 2 1 3 26 26 H 1.09002 * 109.47218 * 119.99971 * 2 1 3 27 27 H 1.08997 * 109.47108 * 270.00356 * 4 3 2 28 28 H 1.09003 * 109.46598 * 30.00517 * 4 3 2 29 29 H 1.08998 * 109.47085 * 149.99468 * 4 3 2 30 30 H 1.09004 * 109.46896 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.46930 * 299.99977 * 11 9 8 32 32 H 1.08999 * 109.46998 * 60.00229 * 11 9 8 33 33 H 1.09004 * 109.47066 * 55.00137 * 12 9 8 34 34 H 1.08994 * 109.47405 * 294.99967 * 12 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 2.2497 2.0357 1.2025 6 7 2.0758 1.5422 2.3994 7 8 2.3729 2.3666 3.2381 8 6 2.7673 3.4982 2.6463 9 6 3.2147 4.7608 3.3366 10 1 3.4795 5.5091 2.5895 11 6 2.0784 5.2938 4.2118 12 6 4.4335 4.4596 4.2109 13 6 4.9555 5.7428 4.8043 14 1 4.4666 6.6795 4.5805 15 6 6.0536 5.7203 5.6379 16 7 6.6488 4.5797 5.9107 17 14 6.6959 7.3099 6.3795 18 1 5.8563 8.4452 5.9200 19 1 6.6416 7.2224 7.8610 20 1 8.1003 7.5257 5.9476 21 7 2.6969 3.3008 1.3528 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2919 1.9006 -1.5833 28 1 1.5816 1.6878 -2.0283 29 1 2.0954 3.1411 -1.1382 30 1 2.4019 6.2073 4.7107 31 1 1.2101 5.5083 3.5888 32 1 1.8137 4.5455 4.9589 33 1 5.2115 3.9975 3.6031 34 1 4.1465 3.7791 5.0125 35 1 7.4215 4.5639 6.4969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233993864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:09 Heat of formation + Delta-G solvation = 63.162020 kcal Electronic energy + Delta-G solvation = -17049.418589 eV Core-core repulsion = 14278.821809 eV Total energy + Delta-G solvation = -2770.596780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.74041 -37.63163 -35.76322 -34.29184 -32.41084 -30.91285 -30.52467 -27.10521 -26.42899 -24.54520 -23.68845 -22.68147 -21.46766 -19.38232 -17.39614 -17.12017 -16.53219 -15.86927 -15.20822 -14.54492 -14.53534 -14.16841 -13.79504 -13.30778 -12.72345 -12.57865 -12.33805 -12.00286 -11.88972 -11.78205 -11.45560 -11.33584 -11.16506 -10.97214 -10.84821 -10.52701 -10.39043 -10.18257 -9.98322 -9.31252 -9.19844 -8.42226 -7.85871 -6.05824 -4.09537 1.85759 2.66917 2.97258 3.29734 3.37578 3.40602 3.61239 4.36296 4.47675 4.73498 4.96306 5.07612 5.26629 5.30630 5.35455 5.51492 5.57828 5.69496 5.75051 5.80055 5.87584 5.93690 6.05219 6.28446 6.41976 6.61489 6.72446 6.87700 7.02493 7.31794 7.53038 7.61802 7.90170 8.26539 8.91879 8.95271 9.54730 11.05552 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049344 B = 0.004807 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.309588 B = 5823.636440 C = 5840.547708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.590 5.590 4 C 0.111 3.889 5 C 0.419 3.581 6 N -0.449 5.449 7 O 0.058 5.942 8 C 0.237 3.763 9 C -0.001 4.001 10 H 0.104 0.896 11 C -0.134 4.134 12 C 0.029 3.971 13 C -0.520 4.520 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.529 5.529 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.029 0.971 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 -5.291 -11.120 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.010 3.990 3 N -0.319 5.319 4 C -0.032 4.032 5 C 0.059 3.941 6 N -0.179 5.179 7 O 0.015 5.985 8 C 0.018 3.982 9 C -0.021 4.021 10 H 0.122 0.878 11 C -0.192 4.192 12 C -0.009 4.009 13 C -0.558 4.558 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.268 5.268 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.439 -6.071 -11.340 16.566 hybrid contribution 0.545 0.783 0.387 1.029 sum -9.894 -5.288 -10.954 15.679 Atomic orbital electron populations 1.22206 0.96337 1.01948 1.02360 1.21356 0.94031 0.80650 1.02962 1.45108 1.73349 1.13150 1.00245 1.21539 1.00368 0.98147 0.83162 1.22035 0.96606 0.87516 0.87988 1.74743 1.30393 1.14903 0.97838 1.85235 1.61616 1.18702 1.32897 1.29222 0.90521 0.91952 0.86540 1.20319 0.98532 0.85529 0.97769 0.87819 1.21771 0.95629 1.02864 0.98949 1.19238 0.89568 0.98255 0.93855 1.21110 1.13062 0.93018 1.28606 0.91907 1.25006 0.96594 0.96250 0.96411 1.69984 1.21386 1.25033 1.36577 0.86496 0.78807 0.83531 0.78938 1.19575 1.20984 1.21037 1.71850 1.25194 1.13783 1.16010 0.92628 0.91603 0.92339 0.90382 0.90367 0.93299 0.91512 0.90682 0.89746 0.94157 0.92297 0.96020 0.95219 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.13 1.52 6.28 -4.04 -0.03 1.49 16 3 N -0.59 -8.55 2.98 -185.19 -0.55 -9.10 16 4 C 0.11 1.26 10.60 59.85 0.63 1.90 16 5 C 0.42 7.77 8.33 -321.18 -2.68 5.10 16 6 N -0.45 -8.91 11.55 28.63 0.33 -8.57 16 7 O 0.06 1.20 11.30 18.08 0.20 1.41 16 8 C 0.24 4.80 7.01 -12.99 -0.09 4.71 16 9 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 10 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 11 C -0.13 -2.35 8.99 37.16 0.33 -2.02 16 12 C 0.03 0.71 4.43 -27.88 -0.12 0.59 16 13 C -0.52 -13.74 8.41 -34.44 -0.29 -14.03 16 14 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 17 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 N -0.53 -10.46 10.96 -12.67 -0.14 -10.60 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 26 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 30 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -30.60 300.58 -7.43 -38.03 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -5.31 Total: -3.84 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.21 Total: -2.33 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.38 Total: -53.63 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: 0.20 Total: 1.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.60 -7.43 -38.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.197 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds