Wall clock time and date at job start Mon Mar 30 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47091 * 2 1 4 4 C 1.46497 * 120.00530 * 269.99902 * 3 2 1 5 5 C 1.38852 * 119.99769 * 90.00165 * 3 2 1 6 6 N 1.30628 * 126.38622 * 0.02562 * 5 3 2 7 7 O 1.21297 * 110.12695 * 179.72268 * 6 5 3 8 8 C 1.33650 * 109.97558 * 0.40911 * 7 6 5 9 9 C 1.50695 * 126.45941 * 179.86288 * 8 7 6 10 10 H 1.09000 * 109.47521 * 179.68545 * 9 8 7 11 11 C 1.53008 * 109.47004 * 299.68533 * 9 8 7 12 12 C 1.52996 * 109.47310 * 59.68315 * 9 8 7 13 13 C 1.50702 * 109.47159 * 174.99934 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 N 1.31044 * 107.07760 * 359.59944 * 8 7 6 22 22 H 1.08997 * 109.47645 * 59.99863 * 1 2 3 23 23 H 1.09000 * 109.47485 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47503 * 299.99849 * 1 2 3 25 25 H 1.08998 * 109.47318 * 240.00628 * 2 1 3 26 26 H 1.09002 * 109.47218 * 119.99971 * 2 1 3 27 27 H 1.08997 * 109.47108 * 270.00356 * 4 3 2 28 28 H 1.09003 * 109.46598 * 30.00517 * 4 3 2 29 29 H 1.08998 * 109.47085 * 149.99468 * 4 3 2 30 30 H 1.09004 * 109.46896 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.46930 * 299.99977 * 11 9 8 32 32 H 1.08999 * 109.46998 * 60.00229 * 11 9 8 33 33 H 1.09004 * 109.47066 * 55.00137 * 12 9 8 34 34 H 1.08994 * 109.47405 * 294.99967 * 12 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 2.2497 2.0357 1.2025 6 7 2.0758 1.5422 2.3994 7 8 2.3729 2.3666 3.2381 8 6 2.7673 3.4982 2.6463 9 6 3.2147 4.7608 3.3366 10 1 3.4795 5.5091 2.5895 11 6 2.0784 5.2938 4.2118 12 6 4.4335 4.4596 4.2109 13 6 4.9555 5.7428 4.8043 14 1 4.4666 6.6795 4.5805 15 6 6.0536 5.7203 5.6379 16 7 6.6488 4.5797 5.9107 17 14 6.6959 7.3099 6.3795 18 1 5.8563 8.4452 5.9200 19 1 6.6416 7.2224 7.8610 20 1 8.1003 7.5257 5.9476 21 7 2.6969 3.3008 1.3528 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2919 1.9006 -1.5833 28 1 1.5816 1.6878 -2.0283 29 1 2.0954 3.1411 -1.1382 30 1 2.4019 6.2073 4.7107 31 1 1.2101 5.5083 3.5888 32 1 1.8137 4.5455 4.9589 33 1 5.2115 3.9975 3.6031 34 1 4.1465 3.7791 5.0125 35 1 7.4215 4.5639 6.4969 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233993864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:09 Heat of formation + Delta-G solvation = 45.346041 kcal Electronic energy + Delta-G solvation = -17050.191148 eV Core-core repulsion = 14278.821809 eV Total energy + Delta-G solvation = -2771.369339 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.24736 -38.78833 -37.46745 -35.77365 -34.35134 -32.12065 -31.81240 -28.98739 -27.51189 -26.21170 -24.89038 -24.34218 -22.92240 -20.81986 -18.93951 -18.63246 -18.40979 -17.14756 -16.52256 -16.45499 -15.80175 -15.44508 -15.04225 -14.68261 -14.40129 -13.80313 -13.54170 -13.39888 -13.06462 -13.04971 -12.82757 -12.81588 -12.77029 -12.59183 -12.23621 -12.11692 -11.98974 -11.83254 -11.65958 -11.21210 -10.98493 -10.54319 -9.09318 -8.16156 -6.26910 0.29053 1.47348 1.47372 1.49422 1.51549 1.61080 2.04908 2.46405 2.98014 3.19383 3.63307 3.98081 4.18892 4.21975 4.29483 4.32684 4.41899 4.46168 4.63031 4.72493 4.80186 4.86537 4.91661 4.94881 5.06898 5.11818 5.24091 5.38229 5.43414 5.61025 5.81983 5.95433 6.06827 6.18376 6.87578 7.40453 7.42566 8.96761 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049344 B = 0.004807 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.309588 B = 5823.636440 C = 5840.547708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 N -0.587 5.587 4 C 0.105 3.895 5 C 0.417 3.583 6 N -0.466 5.466 7 O 0.038 5.962 8 C 0.231 3.769 9 C 0.010 3.990 10 H 0.112 0.888 11 C -0.127 4.127 12 C 0.037 3.963 13 C -0.527 4.527 14 H 0.080 0.920 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.253 1.253 19 H -0.282 1.282 20 H -0.285 1.285 21 N -0.535 5.535 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.028 0.972 25 H 0.115 0.885 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.054 0.946 33 H -0.014 1.014 34 H 0.004 0.996 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 -4.528 -12.641 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.004 3.996 3 N -0.315 5.315 4 C -0.037 4.037 5 C 0.056 3.944 6 N -0.201 5.201 7 O -0.001 6.001 8 C 0.011 3.989 9 C -0.011 4.011 10 H 0.130 0.870 11 C -0.185 4.185 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.098 0.902 15 C -0.198 4.198 16 N -0.577 5.577 17 Si 0.792 3.208 18 H -0.177 1.177 19 H -0.208 1.208 20 H -0.211 1.211 21 N -0.276 5.276 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.133 0.867 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.004 0.996 34 H 0.022 0.978 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.517 -5.300 -12.881 18.073 hybrid contribution 0.854 0.441 0.737 1.211 sum -10.663 -4.859 -12.144 16.875 Atomic orbital electron populations 1.22135 0.95068 1.03252 1.01542 1.21647 0.95031 0.79106 1.03838 1.45713 1.72091 1.14101 0.99604 1.21774 1.01874 0.97474 0.82533 1.22459 0.95570 0.87227 0.89139 1.74711 1.32097 1.14978 0.98320 1.85206 1.62246 1.18996 1.33603 1.29199 0.90858 0.91937 0.86912 1.20126 0.97557 0.85859 0.97545 0.86986 1.21721 0.95513 1.02462 0.98795 1.19025 0.90622 0.97185 0.93257 1.21548 1.12924 0.93981 1.28002 0.90222 1.25972 0.97051 0.99686 0.97064 1.70136 1.22148 1.27653 1.37721 0.85363 0.78069 0.79568 0.77845 1.17652 1.20798 1.21082 1.71829 1.25475 1.14638 1.15637 0.91207 0.89282 0.95260 0.86667 0.92302 0.92722 0.87555 0.92025 0.89624 0.91387 0.92731 0.99574 0.97809 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.24 71.98 0.74 -2.13 16 2 C 0.13 2.59 6.28 86.38 0.54 3.14 16 3 N -0.59 -16.03 2.98 -742.61 -2.22 -18.25 16 4 C 0.11 2.13 10.60 127.77 1.35 3.48 16 5 C 0.42 15.37 8.33 260.92 2.17 17.54 16 6 N -0.47 -18.84 11.55 -66.68 -0.77 -19.61 16 7 O 0.04 1.62 11.30 74.77 0.84 2.47 16 8 C 0.23 9.49 7.01 88.36 0.62 10.11 16 9 C 0.01 0.39 2.81 -11.54 -0.03 0.35 16 10 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 11 C -0.13 -4.33 8.99 71.98 0.65 -3.69 16 12 C 0.04 1.90 4.43 29.85 0.13 2.04 16 13 C -0.53 -27.92 8.41 25.60 0.22 -27.70 16 14 H 0.08 3.87 7.06 -2.91 -0.02 3.85 16 15 C 0.00 0.00 5.46 84.66 0.46 0.46 16 16 N -0.94 -56.22 13.29 21.45 0.28 -55.93 16 17 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 18 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 N -0.54 -21.15 10.96 -311.43 -3.41 -24.56 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.12 1.55 8.07 -2.39 -0.02 1.54 16 26 H 0.06 1.46 7.69 -2.39 -0.02 1.44 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 1.33 8.07 -2.39 -0.02 1.31 16 29 H 0.06 1.43 7.69 -2.39 -0.02 1.42 16 30 H 0.08 2.90 6.95 -2.38 -0.02 2.88 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H -0.01 -0.82 8.14 -2.38 -0.02 -0.83 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -67.44 300.58 4.67 -62.77 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.06 Total: 4.90 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.85 Total: 3.60 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.11 Total: -118.35 kcal Atomic # 8 Polarization: 1.62 SS G_CDS: 0.84 Total: 2.47 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -67.44 4.67 -62.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.120 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds