Wall clock time and date at job start Mon Mar 30 2020 03:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46807 * 2 1 4 4 C 1.46496 * 120.00342 * 269.99453 * 3 2 1 5 5 C 1.38852 * 119.99749 * 90.00113 * 3 2 1 6 6 N 1.30631 * 126.38819 * 359.97433 * 5 3 2 7 7 O 1.21287 * 110.12500 * 180.02562 * 6 5 3 8 8 C 1.33654 * 109.98066 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.46071 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46909 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47421 * 60.02186 * 9 8 7 12 12 C 1.52997 * 109.47011 * 300.02116 * 9 8 7 13 13 C 1.50706 * 109.47238 * 184.99962 * 12 9 8 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00200 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47145 * 89.99836 * 17 15 13 19 19 H 1.48496 * 109.47547 * 210.00333 * 17 15 13 20 20 H 1.48499 * 109.47030 * 330.00237 * 17 15 13 21 21 N 1.31040 * 107.07665 * 0.26161 * 8 7 6 22 22 H 1.08998 * 109.47549 * 59.99750 * 1 2 3 23 23 H 1.09001 * 109.47441 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47424 * 299.99749 * 1 2 3 25 25 H 1.08987 * 109.47039 * 239.99947 * 2 1 3 26 26 H 1.09002 * 109.46878 * 120.00027 * 2 1 3 27 27 H 1.08996 * 109.47433 * 270.00791 * 4 3 2 28 28 H 1.09004 * 109.46562 * 30.00574 * 4 3 2 29 29 H 1.09001 * 109.46976 * 149.99927 * 4 3 2 30 30 H 1.08993 * 109.46967 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.46762 * 300.00554 * 11 9 8 32 32 H 1.09004 * 109.46776 * 59.99636 * 11 9 8 33 33 H 1.09001 * 109.46832 * 65.00276 * 12 9 8 34 34 H 1.09000 * 109.47611 * 305.00573 * 12 9 8 35 35 H 0.96999 * 120.00061 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 2.2496 2.0357 1.2025 6 7 2.0748 1.5425 2.3994 7 8 2.3665 2.3688 3.2380 8 6 2.7667 3.4984 2.6462 9 6 3.2136 4.7613 3.3365 10 1 3.4782 5.5096 2.5893 11 6 4.4323 4.4607 4.2112 12 6 2.0769 5.2940 4.2112 13 6 2.4787 6.6198 4.8046 14 1 3.4476 7.0405 4.5799 15 6 1.6093 7.2955 5.6343 16 7 1.9597 8.4527 6.1518 17 14 -0.0669 6.5681 6.0224 18 1 0.0323 5.7141 7.2332 19 1 -1.0376 7.6647 6.2683 20 1 -0.5281 5.7471 4.8742 21 7 2.6922 3.3025 1.3527 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.2919 1.9006 -1.5833 28 1 1.5817 1.6877 -2.0283 29 1 2.0954 3.1410 -1.1383 30 1 4.7558 5.3742 4.7100 31 1 4.1676 3.7124 4.9583 32 1 5.2421 4.0811 3.5880 33 1 1.8722 4.5843 5.0128 34 1 1.1813 5.4242 3.6038 35 1 1.3479 8.9282 6.7352 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233994239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:11 Heat of formation + Delta-G solvation = 66.909925 kcal Electronic energy + Delta-G solvation = -17133.545534 eV Core-core repulsion = 14363.111276 eV Total energy + Delta-G solvation = -2770.434258 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.86653 -37.71819 -35.91635 -34.40003 -32.40445 -30.98426 -30.69102 -27.70846 -26.50842 -24.55490 -23.73148 -22.62533 -21.34588 -19.41260 -17.50271 -17.33258 -16.90282 -15.96758 -15.28379 -14.70398 -14.48536 -13.97222 -13.87207 -13.56288 -12.82534 -12.75637 -12.40122 -12.12950 -12.01047 -11.88735 -11.56013 -11.44890 -11.24579 -11.18634 -10.91226 -10.52172 -10.34869 -10.15239 -9.87208 -9.58687 -9.27081 -8.59422 -7.95213 -6.10226 -4.09877 1.72763 2.58074 2.86288 3.29827 3.37551 3.42045 3.47749 4.30193 4.41370 4.66018 4.89161 5.01933 5.21094 5.23269 5.28696 5.44252 5.53140 5.61289 5.66696 5.72774 5.76694 5.83250 6.02713 6.19374 6.30112 6.50920 6.55810 6.85127 6.93339 7.05940 7.18601 7.24317 7.65655 8.42433 8.80030 8.91962 9.51004 11.02216 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.005741 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.485046 B = 4876.260886 C = 5216.837520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.590 5.590 4 C 0.110 3.890 5 C 0.420 3.580 6 N -0.449 5.449 7 O 0.056 5.944 8 C 0.232 3.768 9 C 0.009 3.991 10 H 0.110 0.890 11 C -0.136 4.136 12 C -0.008 4.008 13 C -0.520 4.520 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.874 3.126 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.266 1.266 21 N -0.524 5.524 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.024 0.976 34 H 0.021 0.979 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -14.428 -11.926 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.033 4.033 5 C 0.060 3.940 6 N -0.179 5.179 7 O 0.014 5.986 8 C 0.013 3.987 9 C -0.011 4.011 10 H 0.128 0.872 11 C -0.194 4.194 12 C -0.046 4.046 13 C -0.557 4.557 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.536 5.536 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.191 1.191 21 N -0.264 5.264 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.049 -14.980 -12.130 19.276 hybrid contribution -1.024 -0.189 0.230 1.066 sum -1.073 -15.170 -11.901 19.311 Atomic orbital electron populations 1.22216 0.96245 1.02010 1.02534 1.21360 0.94147 0.80554 1.02876 1.45144 1.73215 1.13192 1.00247 1.21557 1.00306 0.98299 0.83133 1.22052 0.96623 0.87354 0.88018 1.74745 1.30397 1.14860 0.97868 1.85227 1.61564 1.18858 1.32998 1.29255 0.91017 0.91808 0.86667 1.20097 0.98253 0.85103 0.97665 0.87196 1.21790 0.95050 1.03661 0.98893 1.19712 0.92768 0.97616 0.94481 1.20932 1.03977 1.02226 1.28595 0.90199 1.24928 0.98099 0.94585 0.95307 1.69888 1.36698 1.14493 1.32551 0.86868 0.84568 0.79068 0.79400 1.20007 1.21257 1.19105 1.71862 1.25235 1.13396 1.15922 0.92523 0.91557 0.92277 0.90338 0.90429 0.93317 0.91412 0.90558 0.89219 0.92345 0.93875 0.95749 0.96048 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 37.16 0.38 -1.34 16 2 C 0.13 1.44 6.28 -4.04 -0.03 1.41 16 3 N -0.59 -8.13 2.98 -185.20 -0.55 -8.68 16 4 C 0.11 1.19 10.60 59.84 0.63 1.82 16 5 C 0.42 7.43 8.33 -321.17 -2.68 4.76 16 6 N -0.45 -8.46 11.55 28.63 0.33 -8.13 16 7 O 0.06 1.10 11.29 18.08 0.20 1.30 16 8 C 0.23 4.47 7.01 -12.99 -0.09 4.37 16 9 C 0.01 0.18 2.81 -91.77 -0.26 -0.08 16 10 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 11 C -0.14 -2.33 8.99 37.16 0.33 -2.00 16 12 C -0.01 -0.17 3.50 -27.88 -0.10 -0.27 16 13 C -0.52 -13.84 8.96 -34.44 -0.31 -14.15 16 14 H 0.08 2.23 7.30 -52.49 -0.38 1.84 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 17 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 N -0.52 -9.92 10.96 -12.68 -0.14 -10.06 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.62 8.07 -51.94 -0.42 0.20 16 26 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 30 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 34 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -30.67 296.98 -7.06 -37.72 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -5.27 Total: -3.87 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.21 Total: -3.53 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.41 Total: -52.76 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.67 -7.06 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233994239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.632 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds