Wall clock time and date at job start Mon Mar 30 2020 03:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46807 * 2 1 4 4 C 1.46496 * 120.00342 * 269.99453 * 3 2 1 5 5 C 1.38852 * 119.99749 * 90.00113 * 3 2 1 6 6 N 1.30631 * 126.38819 * 359.97433 * 5 3 2 7 7 O 1.21287 * 110.12500 * 180.02562 * 6 5 3 8 8 C 1.33654 * 109.98066 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.46071 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46909 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47421 * 60.02186 * 9 8 7 12 12 C 1.52997 * 109.47011 * 300.02116 * 9 8 7 13 13 C 1.50706 * 109.47238 * 184.99962 * 12 9 8 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00200 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47145 * 89.99836 * 17 15 13 19 19 H 1.48496 * 109.47547 * 210.00333 * 17 15 13 20 20 H 1.48499 * 109.47030 * 330.00237 * 17 15 13 21 21 N 1.31040 * 107.07665 * 0.26161 * 8 7 6 22 22 H 1.08998 * 109.47549 * 59.99750 * 1 2 3 23 23 H 1.09001 * 109.47441 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47424 * 299.99749 * 1 2 3 25 25 H 1.08987 * 109.47039 * 239.99947 * 2 1 3 26 26 H 1.09002 * 109.46878 * 120.00027 * 2 1 3 27 27 H 1.08996 * 109.47433 * 270.00791 * 4 3 2 28 28 H 1.09004 * 109.46562 * 30.00574 * 4 3 2 29 29 H 1.09001 * 109.46976 * 149.99927 * 4 3 2 30 30 H 1.08993 * 109.46967 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.46762 * 300.00554 * 11 9 8 32 32 H 1.09004 * 109.46776 * 59.99636 * 11 9 8 33 33 H 1.09001 * 109.46832 * 65.00276 * 12 9 8 34 34 H 1.09000 * 109.47611 * 305.00573 * 12 9 8 35 35 H 0.96999 * 120.00061 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 2.2496 2.0357 1.2025 6 7 2.0748 1.5425 2.3994 7 8 2.3665 2.3688 3.2380 8 6 2.7667 3.4984 2.6462 9 6 3.2136 4.7613 3.3365 10 1 3.4782 5.5096 2.5893 11 6 4.4323 4.4607 4.2112 12 6 2.0769 5.2940 4.2112 13 6 2.4787 6.6198 4.8046 14 1 3.4476 7.0405 4.5799 15 6 1.6093 7.2955 5.6343 16 7 1.9597 8.4527 6.1518 17 14 -0.0669 6.5681 6.0224 18 1 0.0323 5.7141 7.2332 19 1 -1.0376 7.6647 6.2683 20 1 -0.5281 5.7471 4.8742 21 7 2.6922 3.3025 1.3527 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.2919 1.9006 -1.5833 28 1 1.5817 1.6877 -2.0283 29 1 2.0954 3.1410 -1.1383 30 1 4.7558 5.3742 4.7100 31 1 4.1676 3.7124 4.9583 32 1 5.2421 4.0811 3.5880 33 1 1.8722 4.5843 5.0128 34 1 1.1813 5.4242 3.6038 35 1 1.3479 8.9282 6.7352 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233994239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:10 Heat of formation + Delta-G solvation = 48.733437 kcal Electronic energy + Delta-G solvation = -17134.333726 eV Core-core repulsion = 14363.111276 eV Total energy + Delta-G solvation = -2771.222450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.27713 -38.79869 -37.54417 -35.79302 -34.38674 -32.23503 -31.82421 -29.52651 -27.52545 -26.11293 -24.85516 -24.18821 -22.79711 -20.80085 -19.13850 -18.92598 -18.43485 -17.16541 -16.60154 -16.27343 -15.83696 -15.40801 -15.25330 -14.72196 -14.67123 -13.91127 -13.57526 -13.40919 -13.15317 -13.06877 -12.97771 -12.89348 -12.76406 -12.61777 -12.11614 -12.09187 -11.87911 -11.78370 -11.77184 -11.34447 -11.07969 -10.73923 -9.09634 -8.25937 -6.28796 0.26245 1.36653 1.39331 1.46031 1.48663 1.51720 1.99758 2.37142 2.93791 3.09455 3.61368 3.96762 4.12832 4.20827 4.21401 4.28136 4.40260 4.45606 4.63050 4.67524 4.78524 4.85117 4.89552 4.91821 4.97917 5.06422 5.20071 5.22863 5.32847 5.48075 5.62128 5.93958 6.06506 6.28176 6.77492 7.34898 7.39155 8.89430 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.005741 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.485046 B = 4876.260886 C = 5216.837520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.587 5.587 4 C 0.105 3.895 5 C 0.416 3.584 6 N -0.464 5.464 7 O 0.043 5.957 8 C 0.229 3.771 9 C 0.017 3.983 10 H 0.110 0.890 11 C -0.130 4.130 12 C -0.003 4.003 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.018 3.982 16 N -0.942 5.942 17 Si 0.931 3.069 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.260 1.260 21 N -0.533 5.533 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.025 0.975 25 H 0.117 0.883 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.013 0.987 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -16.473 -13.534 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.315 5.315 4 C -0.037 4.037 5 C 0.056 3.944 6 N -0.198 5.198 7 O 0.003 5.997 8 C 0.009 3.991 9 C -0.003 4.003 10 H 0.128 0.872 11 C -0.188 4.188 12 C -0.041 4.041 13 C -0.554 4.554 14 H 0.075 0.925 15 C -0.180 4.180 16 N -0.583 5.583 17 Si 0.756 3.244 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.184 1.184 21 N -0.274 5.274 22 H 0.085 0.915 23 H 0.108 0.892 24 H 0.044 0.956 25 H 0.135 0.865 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.031 0.969 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.613 -17.043 -13.756 21.911 hybrid contribution -0.799 0.406 0.603 1.081 sum -1.412 -16.637 -13.153 21.255 Atomic orbital electron populations 1.22165 0.95640 1.03215 1.01333 1.21637 0.94585 0.79096 1.04095 1.45723 1.72018 1.14131 0.99649 1.21773 1.02102 0.97292 0.82528 1.22454 0.95756 0.87051 0.89147 1.74717 1.31842 1.14935 0.98287 1.85201 1.62000 1.18964 1.33487 1.29065 0.91351 0.91752 0.86923 1.19893 0.97662 0.85370 0.97419 0.87189 1.21727 0.94861 1.03198 0.98967 1.19585 0.93764 0.95910 0.94877 1.21191 1.02931 1.03415 1.27834 0.92456 1.25709 1.01775 0.94963 0.95566 1.70009 1.38222 1.16101 1.33941 0.85943 0.80351 0.78506 0.79602 1.18985 1.20967 1.18403 1.71847 1.25573 1.14221 1.15710 0.91495 0.89207 0.95570 0.86475 0.91813 0.92060 0.87912 0.92386 0.90539 0.91889 0.91424 0.95360 0.96863 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.24 71.98 0.74 -2.16 16 2 C 0.13 2.38 6.28 86.38 0.54 2.92 16 3 N -0.59 -14.81 2.98 -742.65 -2.22 -17.03 16 4 C 0.10 1.96 10.60 127.77 1.35 3.32 16 5 C 0.42 14.23 8.33 260.91 2.17 16.40 16 6 N -0.46 -17.14 11.55 -66.70 -0.77 -17.91 16 7 O 0.04 1.65 11.29 74.75 0.84 2.49 16 8 C 0.23 8.64 7.01 88.36 0.62 9.26 16 9 C 0.02 0.65 2.81 -11.54 -0.03 0.62 16 10 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 11 C -0.13 -4.35 8.99 71.98 0.65 -3.70 16 12 C 0.00 -0.14 3.50 29.85 0.10 -0.03 16 13 C -0.52 -27.77 8.96 25.60 0.23 -27.54 16 14 H 0.06 3.28 7.30 -2.91 -0.02 3.26 16 15 C 0.02 1.00 5.47 84.65 0.46 1.46 16 16 N -0.94 -56.89 13.96 21.44 0.30 -56.59 16 17 Si 0.93 43.82 27.47 68.60 1.88 45.71 16 18 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 20 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 21 N -0.53 -19.65 10.96 -311.44 -3.41 -23.06 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.12 1.32 8.07 -2.39 -0.02 1.30 16 26 H 0.06 1.39 7.69 -2.39 -0.02 1.37 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.21 8.07 -2.38 -0.02 1.19 16 29 H 0.06 1.32 7.69 -2.39 -0.02 1.30 16 30 H 0.08 2.77 6.95 -2.39 -0.02 2.75 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 34 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 35 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -66.05 296.98 4.48 -61.57 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.01 Total: 4.28 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.84 Total: 0.54 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -6.10 Total: -114.59 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.84 Total: 2.49 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -66.05 4.48 -61.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233994239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.303 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds