Wall clock time and date at job start Mon Mar 30 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.34828 * 2 1 4 4 C 1.54299 * 110.39041 * 237.57636 * 2 1 3 5 5 H 1.09005 * 112.55868 * 94.29669 * 4 2 1 6 6 N 1.46953 * 109.22089 * 327.81337 * 4 2 1 7 7 C 1.33882 * 109.35985 * 248.60020 * 6 4 2 8 8 O 1.21589 * 123.01725 * 179.97438 * 7 6 4 9 9 N 1.33873 * 113.96139 * 0.02562 * 7 6 4 10 10 C 1.46948 * 109.36775 * 0.02562 * 9 7 6 11 11 H 1.09000 * 112.59287 * 237.84721 * 10 9 7 12 12 C 1.54298 * 109.22451 * 111.38081 * 10 9 7 13 13 N 1.48518 * 110.39399 * 122.30153 * 2 1 3 14 14 C 1.46899 * 111.00000 * 278.05283 * 13 2 1 15 15 C 1.52997 * 109.47254 * 169.99871 * 14 13 2 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 H 1.09005 * 109.46765 * 299.15494 * 1 2 3 25 25 H 1.09000 * 109.47240 * 59.14896 * 1 2 3 26 26 H 1.08996 * 109.47170 * 179.15499 * 1 2 3 27 27 H 0.97004 * 125.32042 * 68.58829 * 6 4 2 28 28 H 0.97001 * 125.31917 * 179.97438 * 9 7 6 29 29 H 1.09005 * 110.38663 * 154.57178 * 12 10 9 30 30 H 1.08996 * 110.39343 * 32.17979 * 12 10 9 31 31 H 1.09002 * 109.47043 * 289.99942 * 14 13 2 32 32 H 1.09001 * 109.47354 * 50.00004 * 14 13 2 33 33 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 34 34 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 35 35 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0676 -0.7755 -1.2208 5 1 2.2840 -0.1242 -2.0677 6 7 1.1354 -1.8619 -1.5527 7 6 1.7131 -3.0397 -1.2849 8 8 1.1587 -4.1063 -1.4676 9 7 2.9555 -2.9374 -0.7969 10 6 3.3247 -1.5185 -0.6975 11 1 4.2227 -1.2787 -1.2668 12 6 3.4292 -1.1238 0.7905 13 7 2.0476 -0.7439 1.1767 14 6 2.0510 0.1044 2.3759 15 6 2.3486 -0.7540 3.6070 16 6 2.3527 0.1163 4.8372 17 1 2.1617 1.1757 4.7499 18 6 2.5993 -0.4399 6.0745 19 7 2.6024 0.3195 7.1482 20 14 2.9277 -2.2726 6.2258 21 1 4.3851 -2.5267 6.0969 22 1 2.4569 -2.7522 7.5501 23 1 2.2021 -2.9960 5.1508 24 1 -0.3633 0.5007 0.8975 25 1 -0.3634 0.5270 -0.8822 26 1 -0.3633 -1.0275 -0.0152 27 1 0.2412 -1.7442 -1.9098 28 1 3.5230 -3.6833 -0.5471 29 1 4.1033 -0.2758 0.9120 30 1 3.7718 -1.9707 1.3850 31 1 2.8172 0.8731 2.2751 32 1 1.0752 0.5767 2.4897 33 1 1.5824 -1.5227 3.7078 34 1 3.3243 -1.2263 3.4933 35 1 2.7762 -0.0718 8.0185 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238442454.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:11 Heat of formation + Delta-G solvation = -6.965083 kcal Electronic energy + Delta-G solvation = -17708.467372 eV Core-core repulsion = 14934.829653 eV Total energy + Delta-G solvation = -2773.637719 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55070 -38.12537 -35.46633 -33.84839 -33.05424 -31.11820 -30.03812 -28.24010 -25.51925 -24.22901 -21.72167 -21.54281 -20.28028 -20.00391 -17.65899 -16.92413 -16.29677 -16.11210 -15.40848 -14.95974 -14.37394 -14.19736 -13.99410 -13.54239 -13.32301 -12.77988 -12.53209 -12.22322 -12.01161 -11.65853 -11.48632 -11.35552 -11.19079 -10.89715 -10.13585 -9.96864 -9.96276 -9.80286 -9.28128 -9.21623 -8.88137 -8.55579 -8.14957 -6.07104 -4.05693 2.88612 3.29123 3.30274 3.38889 3.45906 3.92176 4.07853 4.13446 4.44547 4.47016 4.86683 5.03516 5.27672 5.27856 5.36576 5.39878 5.52201 5.68014 5.80882 5.86170 5.98556 6.11326 6.18329 6.33295 6.70573 7.02455 7.04654 7.06862 7.24619 7.39759 7.48914 7.54685 7.79705 8.49189 8.73807 8.96384 9.55613 11.06117 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.006598 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.303754 B = 4242.533353 C = 4635.215942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.044 3.956 3 H 0.061 0.939 4 C 0.123 3.877 5 H 0.105 0.895 6 N -0.725 5.725 7 C 0.710 3.290 8 O -0.599 6.599 9 N -0.728 5.728 10 C 0.118 3.882 11 H 0.105 0.895 12 C 0.023 3.977 13 N -0.503 5.503 14 C 0.062 3.938 15 C -0.003 4.003 16 C -0.523 4.523 17 H 0.070 0.930 18 C 0.069 3.931 19 N -0.903 5.903 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.263 1.263 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.426 0.574 28 H 0.427 0.573 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.009 0.991 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -0.164 -18.482 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 H 0.079 0.921 4 C 0.016 3.984 5 H 0.123 0.877 6 N -0.387 5.387 7 C 0.409 3.591 8 O -0.478 6.478 9 N -0.389 5.389 10 C 0.011 3.989 11 H 0.123 0.877 12 C -0.106 4.106 13 N -0.228 5.228 14 C -0.065 4.065 15 C -0.041 4.041 16 C -0.561 4.561 17 H 0.088 0.912 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.187 1.187 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.268 0.732 28 H 0.268 0.732 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.027 0.973 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.904 -1.157 -18.237 18.296 hybrid contribution 0.682 -0.221 0.270 0.766 sum 1.586 -1.378 -17.968 18.090 Atomic orbital electron populations 1.21657 0.93447 1.02796 1.01563 1.23005 0.97167 0.95928 0.90468 0.92103 1.22689 0.88447 0.90069 0.97184 0.87748 1.45014 1.18352 1.05211 1.70098 1.15783 0.81643 0.84109 0.77533 1.90968 1.66984 1.28398 1.61466 1.45042 1.16333 1.07860 1.69687 1.22751 0.97373 0.81608 0.97122 0.87693 1.23483 0.91876 1.01609 0.93647 1.65424 1.16441 1.38256 1.02658 1.22321 1.00557 0.94344 0.89284 1.19484 0.96252 0.96035 0.92321 1.21071 1.48794 0.96197 0.90066 0.91152 1.24985 0.94642 0.97910 0.95734 1.69910 1.49992 1.35699 0.98618 0.86781 0.78807 0.86157 0.77611 1.20396 1.21391 1.18739 0.91893 0.92725 0.91419 0.73189 0.73190 0.92456 0.89069 0.95051 0.91269 0.95807 0.97292 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.76 37.16 0.33 -1.25 16 2 C 0.04 0.52 2.78 -66.14 -0.18 0.34 16 3 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 4 C 0.12 1.19 4.64 -65.88 -0.31 0.88 16 5 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 6 N -0.73 -8.32 4.64 -57.11 -0.27 -8.58 16 7 C 0.71 10.56 8.91 -88.52 -0.79 9.77 16 8 O -0.60 -11.50 18.05 5.29 0.10 -11.40 16 9 N -0.73 -8.82 5.92 -57.11 -0.34 -9.16 16 10 C 0.12 1.19 4.84 -65.88 -0.32 0.87 16 11 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 12 C 0.02 0.30 5.54 -2.31 -0.01 0.29 16 13 N -0.50 -7.86 5.01 -222.41 -1.11 -8.97 16 14 C 0.06 1.17 4.71 -3.83 -0.02 1.16 16 15 C 0.00 -0.07 4.15 -27.89 -0.12 -0.19 16 16 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 17 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 24 H 0.06 0.81 7.29 -51.93 -0.38 0.43 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.87 6.91 -51.93 -0.36 0.51 16 27 H 0.43 4.25 8.21 -40.82 -0.34 3.91 16 28 H 0.43 4.62 8.96 -40.82 -0.37 4.25 16 29 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 30 H 0.09 1.32 7.79 -51.93 -0.40 0.92 16 31 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 32 H 0.07 1.34 7.16 -51.93 -0.37 0.96 16 33 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 34 H 0.01 0.21 6.89 -51.93 -0.36 -0.15 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -34.56 279.92 -8.17 -42.73 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.02 Total: 2.15 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.85 Total: -1.29 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.94 Total: -53.71 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.10 Total: -11.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.56 -8.17 -42.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238442454.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.768 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds