Wall clock time and date at job start Mon Mar 30 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.34828 * 2 1 4 4 C 1.54299 * 110.39041 * 237.57636 * 2 1 3 5 5 H 1.09005 * 112.55868 * 94.29669 * 4 2 1 6 6 N 1.46953 * 109.22089 * 327.81337 * 4 2 1 7 7 C 1.33882 * 109.35985 * 248.60020 * 6 4 2 8 8 O 1.21589 * 123.01725 * 179.97438 * 7 6 4 9 9 N 1.33873 * 113.96139 * 0.02562 * 7 6 4 10 10 C 1.46948 * 109.36775 * 0.02562 * 9 7 6 11 11 H 1.09000 * 112.59287 * 237.84721 * 10 9 7 12 12 C 1.54298 * 109.22451 * 111.38081 * 10 9 7 13 13 N 1.48518 * 110.39399 * 122.30153 * 2 1 3 14 14 C 1.46899 * 111.00000 * 278.05283 * 13 2 1 15 15 C 1.52997 * 109.47254 * 169.99871 * 14 13 2 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 H 1.09005 * 109.46765 * 299.15494 * 1 2 3 25 25 H 1.09000 * 109.47240 * 59.14896 * 1 2 3 26 26 H 1.08996 * 109.47170 * 179.15499 * 1 2 3 27 27 H 0.97004 * 125.32042 * 68.58829 * 6 4 2 28 28 H 0.97001 * 125.31917 * 179.97438 * 9 7 6 29 29 H 1.09005 * 110.38663 * 154.57178 * 12 10 9 30 30 H 1.08996 * 110.39343 * 32.17979 * 12 10 9 31 31 H 1.09002 * 109.47043 * 289.99942 * 14 13 2 32 32 H 1.09001 * 109.47354 * 50.00004 * 14 13 2 33 33 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 34 34 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 35 35 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0676 -0.7755 -1.2208 5 1 2.2840 -0.1242 -2.0677 6 7 1.1354 -1.8619 -1.5527 7 6 1.7131 -3.0397 -1.2849 8 8 1.1587 -4.1063 -1.4676 9 7 2.9555 -2.9374 -0.7969 10 6 3.3247 -1.5185 -0.6975 11 1 4.2227 -1.2787 -1.2668 12 6 3.4292 -1.1238 0.7905 13 7 2.0476 -0.7439 1.1767 14 6 2.0510 0.1044 2.3759 15 6 2.3486 -0.7540 3.6070 16 6 2.3527 0.1163 4.8372 17 1 2.1617 1.1757 4.7499 18 6 2.5993 -0.4399 6.0745 19 7 2.6024 0.3195 7.1482 20 14 2.9277 -2.2726 6.2258 21 1 4.3851 -2.5267 6.0969 22 1 2.4569 -2.7522 7.5501 23 1 2.2021 -2.9960 5.1508 24 1 -0.3633 0.5007 0.8975 25 1 -0.3634 0.5270 -0.8822 26 1 -0.3633 -1.0275 -0.0152 27 1 0.2412 -1.7442 -1.9098 28 1 3.5230 -3.6833 -0.5471 29 1 4.1033 -0.2758 0.9120 30 1 3.7718 -1.9707 1.3850 31 1 2.8172 0.8731 2.2751 32 1 1.0752 0.5767 2.4897 33 1 1.5824 -1.5227 3.7078 34 1 3.3243 -1.2263 3.4933 35 1 2.7762 -0.0718 8.0185 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238442454.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:11 Heat of formation + Delta-G solvation = -35.961256 kcal Electronic energy + Delta-G solvation = -17709.724741 eV Core-core repulsion = 14934.829653 eV Total energy + Delta-G solvation = -2774.895088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.51787 -39.29400 -36.77164 -35.16064 -34.65398 -32.77948 -31.03990 -29.66009 -26.50448 -25.88287 -22.95075 -22.64895 -21.51919 -21.20976 -19.04947 -18.54586 -17.43671 -17.14117 -16.52978 -16.34177 -15.92111 -15.56697 -15.25209 -14.82457 -14.54222 -14.30124 -13.98982 -13.65826 -13.13022 -12.98404 -12.81737 -12.53966 -12.42803 -12.13148 -11.86883 -11.67198 -11.59004 -11.41432 -11.31606 -10.78204 -10.35635 -9.76046 -9.32925 -8.32516 -6.35850 1.31120 1.35320 1.47532 1.96106 2.22344 2.33067 3.03376 3.05324 3.06573 3.27258 3.53875 4.02626 4.22789 4.33611 4.42784 4.47587 4.55011 4.57307 4.76081 4.82286 4.91892 4.94692 4.99467 5.09961 5.32041 5.39941 5.42185 5.62168 6.02611 6.07370 6.13956 6.27504 6.39875 6.52640 6.72215 7.29355 7.69836 8.83985 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.006598 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.303754 B = 4242.533353 C = 4635.215942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.041 3.959 3 H 0.079 0.921 4 C 0.131 3.869 5 H 0.154 0.846 6 N -0.716 5.716 7 C 0.698 3.302 8 O -0.652 6.652 9 N -0.725 5.725 10 C 0.127 3.873 11 H 0.151 0.849 12 C 0.017 3.983 13 N -0.526 5.526 14 C 0.078 3.922 15 C 0.004 3.996 16 C -0.530 4.530 17 H 0.037 0.963 18 C 0.010 3.990 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.259 1.259 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.433 0.567 28 H 0.431 0.569 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.007 0.993 34 H 0.015 0.985 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -0.230 -20.808 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.068 4.068 3 H 0.097 0.903 4 C 0.025 3.975 5 H 0.171 0.829 6 N -0.377 5.377 7 C 0.397 3.603 8 O -0.535 6.535 9 N -0.385 5.385 10 C 0.021 3.979 11 H 0.169 0.831 12 C -0.112 4.112 13 N -0.251 5.251 14 C -0.050 4.050 15 C -0.034 4.034 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.187 4.187 19 N -0.589 5.589 20 Si 0.771 3.229 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.183 1.183 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.276 0.724 28 H 0.272 0.728 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.033 0.967 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.990 -1.180 -20.583 20.713 hybrid contribution 0.323 -0.094 1.011 1.066 sum 2.313 -1.274 -19.572 19.749 Atomic orbital electron populations 1.21646 0.93561 1.01843 1.02177 1.23162 0.97126 0.96830 0.89728 0.90328 1.22976 0.87268 0.89570 0.97646 0.82863 1.45014 1.18892 1.04760 1.69046 1.16117 0.82301 0.84194 0.77672 1.90922 1.68359 1.30547 1.63716 1.45103 1.15545 1.09187 1.68673 1.22999 0.99393 0.80111 0.95425 0.83141 1.23565 0.90630 1.01429 0.95622 1.65296 1.18536 1.38318 1.02969 1.21916 0.99904 0.93764 0.89394 1.19339 0.95879 0.95450 0.92704 1.21426 1.47890 0.95411 0.92131 0.94478 1.25893 0.94599 1.02822 0.95409 1.70047 1.51573 1.37928 0.99328 0.85710 0.79429 0.80147 0.77640 1.18750 1.20995 1.18269 0.94017 0.89317 0.93201 0.72446 0.72757 0.91131 0.90946 0.94775 0.92403 0.97453 0.96671 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.76 71.98 0.63 -2.19 16 2 C 0.04 0.83 2.78 45.04 0.13 0.96 16 3 H 0.08 1.40 8.00 -2.39 -0.02 1.38 16 4 C 0.13 1.94 4.64 46.07 0.21 2.15 16 5 H 0.15 0.97 8.14 -2.38 -0.02 0.96 16 6 N -0.72 -14.42 4.64 -453.35 -2.10 -16.52 16 7 C 0.70 19.60 8.91 179.62 1.60 21.20 16 8 O -0.65 -24.90 18.05 -4.00 -0.07 -24.97 16 9 N -0.72 -15.81 5.92 -453.37 -2.69 -18.49 16 10 C 0.13 2.02 4.84 46.07 0.22 2.24 16 11 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 12 C 0.02 0.39 5.54 86.45 0.48 0.87 16 13 N -0.53 -15.51 5.01 -857.57 -4.30 -19.81 16 14 C 0.08 2.92 4.71 86.30 0.41 3.33 16 15 C 0.00 0.20 4.15 29.85 0.12 0.32 16 16 C -0.53 -30.51 9.66 25.60 0.25 -30.26 16 17 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 18 C 0.01 0.59 5.47 84.65 0.46 1.05 16 19 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 20 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 24 H 0.04 1.04 7.29 -2.38 -0.02 1.02 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.22 6.91 -2.39 -0.02 1.20 16 27 H 0.43 7.55 8.21 -92.71 -0.76 6.79 16 28 H 0.43 8.55 8.96 -92.71 -0.83 7.72 16 29 H 0.07 1.49 7.75 -2.38 -0.02 1.47 16 30 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 31 H 0.03 1.24 7.76 -2.39 -0.02 1.22 16 32 H 0.06 2.26 7.16 -2.39 -0.02 2.24 16 33 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 34 H 0.01 0.69 6.89 -2.39 -0.02 0.67 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -77.83 279.92 -3.00 -80.84 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -0.54 Total: 11.08 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 4.51 Total: -0.33 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -8.79 Total: -114.03 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.97 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -77.83 -3.00 -80.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238442454.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.874 kcal (2) G-P(sol) polarization free energy of solvation -77.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds