Wall clock time and date at job start Mon Mar 30 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99732 * 2 1 4 4 O 1.20820 * 120.00419 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00198 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.34747 * 39.14384 * 5 3 2 7 7 C 1.49707 * 110.39525 * 276.71489 * 5 3 2 8 8 H 1.09005 * 108.53579 * 162.64761 * 7 5 3 9 9 C 1.49703 * 128.05860 * 29.12586 * 7 5 3 10 10 C 1.56006 * 103.98865 * 210.31794 * 9 7 5 11 11 C 1.56333 * 105.76690 * 6.96297 * 10 9 7 12 12 C 1.51861 * 100.96423 * 26.27780 * 11 10 9 13 13 H 1.08991 * 112.19267 * 70.31076 * 12 11 10 14 14 C 1.51756 * 122.16644 * 207.12180 * 12 11 10 15 15 N 1.49284 * 110.39831 * 161.45168 * 5 3 2 16 16 C 1.36935 * 126.07352 * 292.38251 * 15 5 3 17 17 H 1.08000 * 120.00043 * 10.27324 * 16 15 5 18 18 C 1.38819 * 119.99656 * 190.27892 * 16 15 5 19 19 N 1.31613 * 120.00190 * 8.89904 * 18 16 15 20 20 Si 1.86796 * 119.99695 * 188.89781 * 18 16 15 21 21 H 1.48503 * 109.46942 * 84.99239 * 20 18 16 22 22 H 1.48497 * 109.47042 * 204.99183 * 20 18 16 23 23 H 1.48498 * 109.47157 * 324.98977 * 20 18 16 24 24 H 1.09005 * 109.46717 * 60.00222 * 1 2 3 25 25 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47409 * 300.00262 * 1 2 3 27 27 H 1.08999 * 110.52882 * 328.94807 * 9 7 5 28 28 H 1.08998 * 110.52703 * 91.55587 * 9 7 5 29 29 H 1.08999 * 110.18755 * 126.03535 * 10 9 7 30 30 H 1.08999 * 110.18908 * 247.80885 * 10 9 7 31 31 H 1.09004 * 110.96365 * 143.56895 * 11 10 9 32 32 H 1.09004 * 110.96109 * 267.30635 * 11 10 9 33 33 H 1.09004 * 110.93170 * 33.01616 * 14 12 11 34 34 H 1.09001 * 110.78596 * 269.44555 * 14 12 11 35 35 H 0.96998 * 120.00654 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9866 0.5032 -0.6442 7 6 4.0953 1.1388 1.3944 8 1 5.1552 0.8901 1.3400 9 6 3.4896 0.3934 2.5427 10 6 3.9553 1.1927 3.7989 11 6 4.6667 2.4716 3.2490 12 6 3.9798 2.6283 1.9036 13 1 2.9399 2.9383 2.0060 14 6 4.6551 3.3061 0.7258 15 7 4.0165 2.6269 -0.4446 16 6 3.8754 3.1502 -1.7022 17 1 3.2591 2.6451 -2.4312 18 6 4.5246 4.3298 -2.0399 19 7 5.4103 4.8520 -1.2184 20 14 4.1411 5.1759 -3.6605 21 1 2.9491 6.0460 -3.4947 22 1 5.3033 6.0021 -4.0747 23 1 3.8658 4.1521 -4.7004 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.4021 0.3964 2.4693 28 1 3.8665 -0.6288 2.5762 29 1 3.0950 1.4728 4.4068 30 1 4.6528 0.5963 4.3870 31 1 4.4660 3.3336 3.8853 32 1 5.7392 2.3070 3.1449 33 1 5.7304 3.1274 0.7377 34 1 4.4393 4.3745 0.7185 35 1 5.8637 5.6765 -1.4541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248825036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:18 Heat of formation + Delta-G solvation = -47.116236 kcal Electronic energy + Delta-G solvation = -18272.548160 eV Core-core repulsion = 15464.876605 eV Total energy + Delta-G solvation = -2807.671555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33222 -38.64675 -35.71257 -34.48129 -31.82344 -29.91790 -28.16637 -27.46877 -25.63267 -24.19327 -21.83296 -20.52200 -19.58469 -18.78070 -16.87323 -16.63565 -16.23945 -15.60385 -15.08516 -14.44902 -14.07573 -13.78859 -13.48554 -12.81897 -12.59326 -12.34115 -11.98433 -11.62880 -11.55058 -11.24787 -10.90942 -10.82244 -10.68355 -10.48987 -10.34496 -10.24667 -10.07790 -9.95968 -9.72990 -9.43312 -9.24561 -8.64212 -6.99114 -5.79517 -3.12774 3.07566 3.33033 3.45339 3.46154 3.47720 4.40464 4.61210 5.01511 5.10385 5.38822 5.40090 5.44776 5.49322 5.60661 5.62229 5.70451 5.86347 5.90115 5.96716 6.12802 6.15174 6.16118 6.39239 6.42353 6.49657 6.60439 6.75360 6.90795 7.09871 7.41419 7.53372 7.74114 8.09117 8.63415 9.06924 9.68548 10.32784 11.33155 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.010236 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.529870 B = 2734.734547 C = 3712.396422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.373 6.373 3 C 0.435 3.565 4 O -0.493 6.493 5 C 0.188 3.812 6 H 0.077 0.923 7 C -0.118 4.118 8 H 0.083 0.917 9 C -0.098 4.098 10 C -0.122 4.122 11 C -0.104 4.104 12 C -0.133 4.133 13 H 0.078 0.922 14 C 0.185 3.815 15 N -0.568 5.568 16 C -0.229 4.229 17 H 0.074 0.926 18 C 0.000 4.000 19 N -0.913 5.913 20 Si 0.914 3.086 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -9.090 7.809 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C 0.274 3.726 4 O -0.378 6.378 5 C 0.077 3.923 6 H 0.095 0.905 7 C -0.137 4.137 8 H 0.101 0.899 9 C -0.136 4.136 10 C -0.159 4.159 11 C -0.142 4.142 12 C -0.153 4.153 13 H 0.096 0.904 14 C 0.062 3.938 15 N -0.291 5.291 16 C -0.357 4.357 17 H 0.092 0.908 18 C -0.197 4.197 19 N -0.559 5.559 20 Si 0.744 3.256 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.206 1.206 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.697 -8.541 7.646 12.045 hybrid contribution -0.646 0.558 -0.966 1.289 sum -4.343 -7.983 6.680 11.279 Atomic orbital electron populations 1.23053 0.78908 1.02329 1.01804 1.86625 1.21681 1.35752 1.84941 1.26316 0.93943 0.80690 0.71641 1.90585 1.66810 1.36439 1.43917 1.19783 0.85075 0.92049 0.95405 0.90512 1.21541 1.01221 0.98369 0.92536 0.89912 1.21352 1.00228 0.98302 0.93725 1.22973 0.99641 0.96357 0.96951 1.21926 0.99385 0.96750 0.96188 1.23156 1.01086 0.96058 0.94980 0.90357 1.21038 0.94140 0.97234 0.81375 1.45665 1.65688 1.09919 1.07873 1.18962 1.23871 1.05822 0.87075 0.90793 1.24781 0.97684 0.98582 0.98622 1.69944 1.27620 1.21561 1.36755 0.86114 0.77354 0.79507 0.82627 1.21396 1.21553 1.20600 0.92653 0.89195 0.92812 0.92264 0.91682 0.92152 0.92053 0.92006 0.91145 0.94356 0.90779 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.37 -6.74 10.47 -39.26 -0.41 -7.15 16 3 C 0.44 9.34 5.89 36.01 0.21 9.55 16 4 O -0.49 -12.21 15.88 -18.75 -0.30 -12.51 16 5 C 0.19 4.03 3.60 -69.16 -0.25 3.78 16 6 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 7 C -0.12 -2.11 2.31 -91.23 -0.21 -2.32 16 8 H 0.08 1.45 7.97 -51.93 -0.41 1.04 16 9 C -0.10 -1.43 6.44 -26.75 -0.17 -1.61 16 10 C -0.12 -1.60 6.93 -23.33 -0.16 -1.76 16 11 C -0.10 -1.59 6.61 -25.52 -0.17 -1.76 16 12 C -0.13 -2.60 3.01 -89.18 -0.27 -2.86 16 13 H 0.08 1.69 7.64 -51.93 -0.40 1.29 16 14 C 0.19 4.48 5.18 -2.93 -0.02 4.47 16 15 N -0.57 -14.72 2.84 -164.80 -0.47 -15.19 16 16 C -0.23 -6.55 10.02 -15.06 -0.15 -6.70 16 17 H 0.07 2.10 7.84 -52.49 -0.41 1.69 16 18 C 0.00 0.01 5.42 -17.43 -0.09 -0.08 16 19 N -0.91 -26.68 10.73 55.49 0.60 -26.09 16 20 Si 0.91 22.60 29.56 -169.99 -5.03 17.58 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.06 0.91 7.29 -51.93 -0.38 0.54 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 2.02 6.93 -51.93 -0.36 1.66 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 284.14 15.07 4.28 4.28 Total: -1.00 -31.69 284.14 -6.86 -38.55 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.32 Total: -1.73 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.21 Total: 2.26 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.13 Total: -41.28 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.71 Total: -19.66 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.69 -6.86 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248825036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.571 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds