Wall clock time and date at job start Mon Mar 30 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99732 * 2 1 4 4 O 1.20820 * 120.00419 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00198 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.34747 * 39.14384 * 5 3 2 7 7 C 1.49707 * 110.39525 * 276.71489 * 5 3 2 8 8 H 1.09005 * 108.53579 * 162.64761 * 7 5 3 9 9 C 1.49703 * 128.05860 * 29.12586 * 7 5 3 10 10 C 1.56006 * 103.98865 * 210.31794 * 9 7 5 11 11 C 1.56333 * 105.76690 * 6.96297 * 10 9 7 12 12 C 1.51861 * 100.96423 * 26.27780 * 11 10 9 13 13 H 1.08991 * 112.19267 * 70.31076 * 12 11 10 14 14 C 1.51756 * 122.16644 * 207.12180 * 12 11 10 15 15 N 1.49284 * 110.39831 * 161.45168 * 5 3 2 16 16 C 1.36935 * 126.07352 * 292.38251 * 15 5 3 17 17 H 1.08000 * 120.00043 * 10.27324 * 16 15 5 18 18 C 1.38819 * 119.99656 * 190.27892 * 16 15 5 19 19 N 1.31613 * 120.00190 * 8.89904 * 18 16 15 20 20 Si 1.86796 * 119.99695 * 188.89781 * 18 16 15 21 21 H 1.48503 * 109.46942 * 84.99239 * 20 18 16 22 22 H 1.48497 * 109.47042 * 204.99183 * 20 18 16 23 23 H 1.48498 * 109.47157 * 324.98977 * 20 18 16 24 24 H 1.09005 * 109.46717 * 60.00222 * 1 2 3 25 25 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47409 * 300.00262 * 1 2 3 27 27 H 1.08999 * 110.52882 * 328.94807 * 9 7 5 28 28 H 1.08998 * 110.52703 * 91.55587 * 9 7 5 29 29 H 1.08999 * 110.18755 * 126.03535 * 10 9 7 30 30 H 1.08999 * 110.18908 * 247.80885 * 10 9 7 31 31 H 1.09004 * 110.96365 * 143.56895 * 11 10 9 32 32 H 1.09004 * 110.96109 * 267.30635 * 11 10 9 33 33 H 1.09004 * 110.93170 * 33.01616 * 14 12 11 34 34 H 1.09001 * 110.78596 * 269.44555 * 14 12 11 35 35 H 0.96998 * 120.00654 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9866 0.5032 -0.6442 7 6 4.0953 1.1388 1.3944 8 1 5.1552 0.8901 1.3400 9 6 3.4896 0.3934 2.5427 10 6 3.9553 1.1927 3.7989 11 6 4.6667 2.4716 3.2490 12 6 3.9798 2.6283 1.9036 13 1 2.9399 2.9383 2.0060 14 6 4.6551 3.3061 0.7258 15 7 4.0165 2.6269 -0.4446 16 6 3.8754 3.1502 -1.7022 17 1 3.2591 2.6451 -2.4312 18 6 4.5246 4.3298 -2.0399 19 7 5.4103 4.8520 -1.2184 20 14 4.1411 5.1759 -3.6605 21 1 2.9491 6.0460 -3.4947 22 1 5.3033 6.0021 -4.0747 23 1 3.8658 4.1521 -4.7004 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.4021 0.3964 2.4693 28 1 3.8665 -0.6288 2.5762 29 1 3.0950 1.4728 4.4068 30 1 4.6528 0.5963 4.3870 31 1 4.4660 3.3336 3.8853 32 1 5.7392 2.3070 3.1449 33 1 5.7304 3.1274 0.7377 34 1 4.4393 4.3745 0.7185 35 1 5.8637 5.6765 -1.4541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248825036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:18 Heat of formation + Delta-G solvation = -66.380275 kcal Electronic energy + Delta-G solvation = -18273.383512 eV Core-core repulsion = 15464.876605 eV Total energy + Delta-G solvation = -2808.506906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.94893 -40.18670 -37.33186 -36.24896 -33.74695 -31.49876 -29.96311 -28.74961 -27.09197 -26.02677 -23.52903 -22.08365 -21.10144 -20.26433 -18.84059 -18.30189 -17.87429 -17.21132 -16.70877 -16.17191 -15.67759 -15.35177 -14.82783 -14.44027 -14.14398 -13.90685 -13.68213 -13.31031 -13.14300 -12.87793 -12.74460 -12.33562 -12.23917 -12.02674 -11.95640 -11.86810 -11.69015 -11.55089 -11.29977 -11.12028 -10.88078 -10.67010 -9.05346 -7.95005 -5.30456 1.36508 1.40078 1.43758 1.51007 1.88126 2.42317 3.13429 3.29813 3.34025 3.81612 4.03346 4.11953 4.27265 4.31642 4.36001 4.40559 4.54505 4.55350 4.67346 4.74510 4.78283 4.88852 4.98477 5.14314 5.19731 5.26508 5.32211 5.40467 5.52144 5.52640 5.63649 5.71349 6.04443 6.93006 6.97553 7.57983 8.25291 9.16361 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.010236 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.529870 B = 2734.734547 C = 3712.396422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.445 3.555 4 O -0.534 6.534 5 C 0.177 3.823 6 H 0.086 0.914 7 C -0.106 4.106 8 H 0.090 0.910 9 C -0.093 4.093 10 C -0.110 4.110 11 C -0.101 4.101 12 C -0.129 4.129 13 H 0.053 0.947 14 C 0.193 3.807 15 N -0.595 5.595 16 C -0.243 4.243 17 H 0.066 0.934 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.292 1.292 22 H -0.284 1.284 23 H -0.269 1.269 24 H 0.046 0.954 25 H 0.137 0.863 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.030 0.970 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 -11.284 8.976 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.286 3.714 4 O -0.422 6.422 5 C 0.067 3.933 6 H 0.103 0.897 7 C -0.125 4.125 8 H 0.109 0.891 9 C -0.131 4.131 10 C -0.148 4.148 11 C -0.139 4.139 12 C -0.149 4.149 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.319 5.319 16 C -0.372 4.372 17 H 0.084 0.916 18 C -0.248 4.248 19 N -0.585 5.585 20 Si 0.802 3.198 21 H -0.219 1.219 22 H -0.210 1.210 23 H -0.194 1.194 24 H 0.065 0.935 25 H 0.155 0.845 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.163 -10.796 8.826 14.553 hybrid contribution -0.597 1.144 -1.345 1.864 sum -4.760 -9.652 7.482 13.107 Atomic orbital electron populations 1.23445 0.76197 1.05378 1.01626 1.86564 1.24101 1.33375 1.84110 1.25898 0.93863 0.80967 0.70670 1.90574 1.67632 1.37975 1.46013 1.20037 0.85272 0.90147 0.97798 0.89689 1.21598 1.01831 0.97671 0.91362 0.89144 1.21417 0.99606 0.99694 0.92394 1.22928 1.00475 0.94980 0.96374 1.21972 0.99796 0.98645 0.93470 1.22966 0.99479 0.96457 0.95958 0.92829 1.20768 0.93607 0.95158 0.83462 1.45879 1.66458 1.11964 1.07591 1.19169 1.23389 1.06266 0.88350 0.91581 1.25567 0.97955 0.99289 1.01972 1.70111 1.28506 1.21666 1.38239 0.85170 0.76825 0.78448 0.79320 1.21893 1.21021 1.19379 0.93470 0.84470 0.92500 0.93112 0.88692 0.91148 0.88852 0.91207 0.90240 0.95845 0.95168 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.37 -12.49 10.47 -51.43 -0.54 -13.03 16 3 C 0.45 18.95 5.89 71.24 0.42 19.37 16 4 O -0.53 -26.90 15.88 21.98 0.35 -26.55 16 5 C 0.18 7.59 3.60 42.65 0.15 7.74 16 6 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 7 C -0.11 -3.64 2.31 -11.19 -0.03 -3.66 16 8 H 0.09 2.99 7.97 -2.38 -0.02 2.97 16 9 C -0.09 -2.40 6.44 30.58 0.20 -2.20 16 10 C -0.11 -2.45 6.93 32.80 0.23 -2.22 16 11 C -0.10 -2.86 6.61 31.38 0.21 -2.66 16 12 C -0.13 -5.04 3.01 -9.86 -0.03 -5.07 16 13 H 0.05 2.36 7.64 -2.39 -0.02 2.34 16 14 C 0.19 9.75 5.18 85.36 0.44 10.19 16 15 N -0.59 -31.81 2.84 -675.32 -1.92 -33.73 16 16 C -0.24 -14.33 10.02 84.04 0.84 -13.48 16 17 H 0.07 3.87 7.84 -2.91 -0.02 3.85 16 18 C -0.05 -3.15 5.42 84.86 0.46 -2.69 16 19 N -0.94 -56.99 10.73 21.65 0.23 -56.76 16 20 Si 0.97 47.59 29.56 68.60 2.03 49.62 16 21 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 24 H 0.05 1.33 8.13 -2.38 -0.02 1.31 16 25 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.06 1.47 8.13 -2.39 -0.02 1.46 16 27 H 0.05 1.41 7.29 -2.39 -0.02 1.39 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.03 1.75 6.93 -2.39 -0.02 1.73 16 35 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -71.92 284.14 5.31 -66.62 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.06 Total: 6.61 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 4.09 Total: 7.22 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.69 Total: -90.49 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.19 Total: -39.58 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -71.92 5.31 -66.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248825036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.238 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds