Wall clock time and date at job start Mon Mar 30 2020 03:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.38692 * 126.04495 * 2 1 4 4 H 0.97002 * 125.98673 * 0.02562 * 3 2 1 5 5 C 1.34760 * 108.03199 * 180.24374 * 3 2 1 6 6 O 1.21796 * 125.94308 * 179.76776 * 5 3 2 7 7 N 1.34752 * 108.10552 * 359.77254 * 5 3 2 8 8 H 0.97004 * 125.98043 * 180.02562 * 7 5 3 9 9 C 1.32866 * 126.04186 * 179.84285 * 2 1 3 10 10 C 1.50698 * 126.04271 * 0.02562 * 9 2 1 11 11 H 1.09002 * 109.46915 * 354.72018 * 10 9 2 12 12 C 1.52994 * 109.47206 * 114.71963 * 10 9 2 13 13 C 1.50710 * 109.47026 * 295.50742 * 12 10 9 14 14 H 1.08000 * 119.99966 * 355.16477 * 13 12 10 15 15 C 1.37875 * 119.99806 * 175.15605 * 13 12 10 16 16 N 1.31519 * 119.99652 * 180.27740 * 15 13 12 17 17 Si 1.86797 * 120.00282 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47359 * 89.99633 * 17 15 13 19 19 H 1.48497 * 109.47172 * 209.99697 * 17 15 13 20 20 H 1.48499 * 109.47098 * 329.99812 * 17 15 13 21 21 N 1.46897 * 109.47358 * 234.71900 * 10 9 2 22 22 C 1.46901 * 111.00115 * 59.39322 * 21 10 9 23 23 C 1.46903 * 111.00312 * 183.34704 * 21 10 9 24 24 H 1.08998 * 109.47614 * 270.15968 * 1 2 3 25 25 H 1.09005 * 109.47029 * 30.16330 * 1 2 3 26 26 H 1.09002 * 109.47184 * 150.15560 * 1 2 3 27 27 H 1.09001 * 109.47427 * 175.50974 * 12 10 9 28 28 H 1.09004 * 109.47173 * 55.50555 * 12 10 9 29 29 H 0.96998 * 119.99915 * 179.73304 * 16 15 13 30 30 H 1.09002 * 109.46946 * 63.95411 * 22 21 10 31 31 H 1.09000 * 109.47033 * 183.95319 * 22 21 10 32 32 H 1.08997 * 109.47136 * 303.95449 * 22 21 10 33 33 H 1.08998 * 109.47182 * 66.68499 * 23 21 10 34 34 H 1.08994 * 109.47441 * 186.69586 * 23 21 10 35 35 H 1.09007 * 109.46788 * 306.69306 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3231 1.1214 0.0000 4 1 2.0238 2.0441 0.0004 5 6 3.6046 0.7047 -0.0055 6 8 4.5894 1.4213 -0.0110 7 7 3.6068 -0.6428 -0.0037 8 1 4.3927 -1.2115 -0.0063 9 6 2.2887 -1.0743 0.0029 10 6 1.8252 -2.5082 0.0063 11 1 0.7397 -2.5389 0.1006 12 6 2.2427 -3.1823 -1.3021 13 6 1.5303 -2.5244 -2.4558 14 1 0.7900 -1.7606 -2.2685 15 6 1.8236 -2.8975 -3.7502 16 7 1.2058 -2.3195 -4.7572 17 14 3.1036 -4.2189 -4.0741 18 1 2.4449 -5.5495 -4.1035 19 1 3.7599 -3.9626 -5.3813 20 1 4.1235 -4.1952 -2.9951 21 7 2.4353 -3.2175 1.1389 22 6 2.0672 -2.5881 2.4142 23 6 2.0684 -4.6399 1.1287 24 1 -0.3634 0.0029 1.0276 25 1 -0.3633 0.8886 -0.5164 26 1 -0.3634 -0.8914 -0.5114 27 1 1.9783 -4.2392 -1.2669 28 1 3.3199 -3.0815 -1.4352 29 1 1.4150 -2.5793 -5.6681 30 1 0.9908 -2.6724 2.5636 31 1 2.5877 -3.0892 3.2302 32 1 2.3499 -1.5356 2.3948 33 1 2.5158 -5.1243 0.2608 34 1 2.4333 -5.1158 2.0388 35 1 0.9836 -4.7350 1.0788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259650671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:24 Heat of formation + Delta-G solvation = -16.507361 kcal Electronic energy + Delta-G solvation = -17983.904563 eV Core-core repulsion = 15209.853059 eV Total energy + Delta-G solvation = -2774.051503 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.21889 -39.10905 -37.65306 -35.04513 -34.56171 -32.86874 -31.43269 -28.65160 -27.83797 -26.15227 -23.79437 -23.35740 -22.27820 -20.60877 -19.01460 -18.51649 -17.17951 -17.11926 -16.59841 -16.24883 -16.04965 -15.70187 -15.31257 -14.60514 -14.48015 -14.23373 -14.09189 -13.38306 -13.22526 -13.06536 -12.92913 -12.61051 -12.54522 -12.43919 -12.01437 -11.76116 -11.68330 -11.48622 -11.37578 -11.24667 -10.68516 -9.20274 -8.49480 -8.21405 -6.21691 1.32748 1.37084 1.41180 1.48793 1.77779 1.96582 2.39814 2.75439 3.13588 3.15546 3.93977 4.28699 4.32318 4.38321 4.48589 4.61921 4.70102 4.78803 4.83939 4.91518 4.92188 5.07804 5.10953 5.12637 5.24011 5.27248 5.44129 5.67004 5.76972 6.08352 6.20190 6.29991 6.38970 6.50180 6.85846 7.41122 7.41792 8.94072 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.010455 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.302869 B = 2677.480489 C = 3285.993698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.006 3.994 3 N -0.619 5.619 4 H 0.438 0.562 5 C 0.639 3.361 6 O -0.631 6.631 7 N -0.614 5.614 8 H 0.432 0.568 9 C 0.058 3.942 10 C 0.173 3.827 11 H 0.065 0.935 12 C -0.002 4.002 13 C -0.506 4.506 14 H 0.052 0.948 15 C 0.011 3.989 16 N -0.948 5.948 17 Si 0.930 3.070 18 H -0.265 1.265 19 H -0.296 1.296 20 H -0.250 1.250 21 N -0.557 5.557 22 C 0.030 3.970 23 C 0.024 3.976 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.015 0.985 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -1.547 14.226 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 N -0.263 5.263 4 H 0.280 0.720 5 C 0.339 3.661 6 O -0.515 6.515 7 N -0.254 5.254 8 H 0.273 0.727 9 C -0.049 4.049 10 C 0.065 3.935 11 H 0.083 0.917 12 C -0.040 4.040 13 C -0.544 4.544 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.589 5.589 17 Si 0.755 3.245 18 H -0.190 1.190 19 H -0.223 1.223 20 H -0.174 1.174 21 N -0.282 5.282 22 C -0.118 4.118 23 C -0.123 4.123 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.214 -1.091 14.016 14.111 hybrid contribution 0.009 -0.237 -0.916 0.946 sum -1.205 -1.328 13.100 13.222 Atomic orbital electron populations 1.20341 0.85020 1.04036 1.03803 1.20219 0.95213 0.83843 1.10732 1.42997 1.05215 1.09791 1.68252 0.71969 1.16272 0.83948 0.82736 0.83186 1.90995 1.36570 1.59560 1.64409 1.43001 1.09027 1.06359 1.67029 0.72746 1.19702 0.82066 0.95447 1.07687 1.19990 0.96279 0.86102 0.91168 0.91702 1.19616 0.96361 0.96228 0.91806 1.21310 1.21821 1.20924 0.90381 0.92974 1.25755 0.97994 0.98528 0.96343 1.70036 1.44768 1.44816 0.99298 0.85957 0.80633 0.80318 0.77545 1.18957 1.22294 1.17430 1.61983 1.60019 1.03502 1.02687 1.22356 0.99256 0.99545 0.90667 1.22435 0.99123 0.87662 1.03116 0.88474 0.90178 0.90879 0.95065 0.96664 0.93001 0.94633 0.90103 0.92661 0.92006 0.89498 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.84 10.00 71.24 0.71 -1.13 16 2 C 0.01 0.19 7.18 40.30 0.29 0.48 16 3 N -0.62 -19.65 6.15 -311.98 -1.92 -21.57 16 4 H 0.44 11.14 8.96 -92.71 -0.83 10.31 16 5 C 0.64 24.75 9.32 179.07 1.67 26.42 16 6 O -0.63 -28.56 18.06 -4.65 -0.08 -28.65 16 7 N -0.61 -22.33 6.15 -311.98 -1.92 -24.25 16 8 H 0.43 15.00 8.96 -92.71 -0.83 14.16 16 9 C 0.06 2.00 3.75 40.30 0.15 2.15 16 10 C 0.17 5.91 1.87 44.17 0.08 6.00 16 11 H 0.07 2.18 6.79 -2.39 -0.02 2.16 16 12 C 0.00 -0.10 3.34 29.85 0.10 0.00 16 13 C -0.51 -26.39 9.11 25.60 0.23 -26.16 16 14 H 0.05 2.92 7.45 -2.91 -0.02 2.90 16 15 C 0.01 0.59 5.47 84.65 0.46 1.05 16 16 N -0.95 -57.38 13.96 21.45 0.30 -57.08 16 17 Si 0.93 43.13 27.57 68.60 1.89 45.02 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.25 -10.94 6.40 99.48 0.64 -10.31 16 21 N -0.56 -15.71 4.88 -927.74 -4.53 -20.23 16 22 C 0.03 0.67 9.34 127.69 1.19 1.87 16 23 C 0.02 0.60 8.97 127.69 1.15 1.74 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.07 2.09 6.69 -2.39 -0.02 2.08 16 27 H 0.03 1.27 5.92 -2.39 -0.01 1.26 16 28 H 0.01 0.67 6.86 -2.39 -0.02 0.66 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 32 H 0.05 1.38 6.93 -2.39 -0.02 1.36 16 33 H 0.06 1.67 6.55 -2.39 -0.02 1.66 16 34 H 0.09 1.67 8.05 -2.39 -0.02 1.65 16 35 H 0.03 0.75 8.12 -2.38 -0.02 0.73 16 Total: -1.00 -69.13 287.87 -0.83 -69.96 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.61 Total: 24.38 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.04 Total: 12.41 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -8.07 Total: -123.13 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.08 Total: -28.65 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.89 Total: 45.02 kcal Total: -69.13 -0.83 -69.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.454 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds