Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39871 * 125.89494 * 2 1 4 4 C 1.35319 * 107.91769 * 180.25966 * 3 2 1 5 5 C 1.50697 * 126.12885 * 179.75732 * 4 3 2 6 6 H 1.08995 * 109.47115 * 205.02658 * 5 4 3 7 7 O 1.42904 * 109.47029 * 325.02836 * 5 4 3 8 8 C 1.53005 * 109.47116 * 85.02574 * 5 4 3 9 9 N 1.46494 * 109.47269 * 180.02562 * 8 5 4 10 10 C 1.46503 * 120.00358 * 90.00010 * 9 8 5 11 11 C 1.36936 * 119.99817 * 269.99989 * 9 8 5 12 12 H 1.08002 * 120.00149 * 23.18960 * 11 9 8 13 13 C 1.38817 * 120.00080 * 203.18612 * 11 9 8 14 14 N 1.31619 * 119.99738 * 13.72167 * 13 11 9 15 15 Si 1.86799 * 119.99998 * 193.71419 * 13 11 9 16 16 H 1.48497 * 109.47052 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46917 * 120.00615 * 15 13 11 18 18 H 1.48501 * 109.47408 * 240.00343 * 15 13 11 19 19 N 1.34947 * 107.74387 * 359.60880 * 4 3 2 20 20 C 1.46500 * 126.03785 * 180.14577 * 19 4 3 21 21 N 1.30830 * 125.89954 * 180.02562 * 2 1 3 22 22 H 1.09006 * 109.47076 * 90.00187 * 1 2 3 23 23 H 1.08995 * 109.47182 * 210.00315 * 1 2 3 24 24 H 1.08995 * 109.47213 * 330.00467 * 1 2 3 25 25 H 1.07998 * 126.04317 * 359.97438 * 3 2 1 26 26 H 0.96696 * 114.00043 * 59.99992 * 7 5 4 27 27 H 1.09001 * 109.47095 * 300.00444 * 8 5 4 28 28 H 1.08997 * 109.47091 * 59.99921 * 8 5 4 29 29 H 1.08999 * 109.47061 * 95.15654 * 10 9 8 30 30 H 1.08996 * 109.47179 * 215.16233 * 10 9 8 31 31 H 1.09000 * 109.46690 * 335.15551 * 10 9 8 32 32 H 0.97000 * 119.99889 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.47318 * 270.26019 * 20 19 4 34 34 H 1.08999 * 109.46877 * 30.26170 * 20 19 4 35 35 H 1.08997 * 109.47554 * 150.26413 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 -0.0058 5 6 4.8350 1.5990 -0.0131 6 1 5.6731 1.0571 -0.4513 7 8 4.5697 2.7716 -0.7857 8 6 5.1820 2.0013 1.4217 9 7 6.3683 2.8607 1.4146 10 6 6.2196 4.3139 1.3035 11 6 7.6164 2.3056 1.5118 12 1 7.7739 1.2769 1.2232 13 6 8.6792 3.0652 1.9812 14 7 8.4522 4.2142 2.5818 15 14 10.4315 2.4567 1.7607 16 1 10.4163 1.1477 1.0597 17 1 11.1994 3.4401 0.9555 18 1 11.0718 2.2986 3.0912 19 7 3.6087 -0.6340 -0.0006 20 6 4.7899 -1.5007 -0.0011 21 7 2.2742 -1.0598 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.9923 2.1598 -0.0004 26 1 3.8343 3.3038 -0.4528 27 1 4.3438 2.5431 1.8599 28 1 5.3842 1.1069 2.0110 29 1 6.2276 4.7571 2.2993 30 1 7.0447 4.7199 0.7184 31 1 5.2757 4.5458 0.8102 32 1 9.1949 4.7449 2.9101 33 1 5.0823 -1.7159 -1.0289 34 1 5.6096 -0.9980 0.5122 35 1 4.5567 -2.4331 0.5129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259655055.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = 48.361519 kcal Electronic energy + Delta-G solvation = -17399.148935 eV Core-core repulsion = 14627.910357 eV Total energy + Delta-G solvation = -2771.238578 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13378 -37.26890 -34.79627 -33.84470 -31.42404 -30.45050 -29.42214 -27.60395 -25.79838 -25.27890 -23.60551 -20.90453 -20.00371 -19.39960 -17.13278 -16.70972 -15.50649 -15.28794 -14.90009 -14.65964 -14.12821 -13.53129 -13.46285 -13.37587 -13.00617 -12.82927 -12.50691 -12.20429 -12.04053 -11.84069 -11.21787 -10.98294 -10.81011 -10.70855 -10.47426 -10.40587 -10.07784 -9.92909 -9.74901 -8.91683 -8.56251 -8.29563 -6.75315 -5.75790 -3.23442 2.04044 2.67170 2.93742 3.35122 3.42128 3.43832 4.43184 4.63282 4.73874 4.91811 5.13368 5.26432 5.29170 5.38564 5.51912 5.59457 5.61027 5.68976 5.77069 5.85395 5.91836 6.04117 6.19683 6.52014 6.64537 6.80771 6.85777 7.18082 7.40226 7.69844 7.77566 7.90293 8.04625 8.35154 9.18957 9.81658 10.30781 11.28108 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037249 B = 0.006109 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.518564 B = 4582.414743 C = 5068.744347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.069 3.931 3 C -0.276 4.276 4 C 0.075 3.925 5 C 0.143 3.857 6 H 0.103 0.897 7 O -0.537 6.537 8 C 0.134 3.866 9 N -0.590 5.590 10 C 0.166 3.834 11 C -0.261 4.261 12 H 0.066 0.934 13 C 0.006 3.994 14 N -0.903 5.903 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.290 1.290 19 N -0.368 5.368 20 C 0.098 3.902 21 N -0.307 5.307 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.143 0.857 26 H 0.367 0.633 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.039 0.961 31 H 0.003 0.997 32 H 0.253 0.747 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 -6.471 -4.435 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.305 4.305 4 C -0.054 4.054 5 C 0.078 3.922 6 H 0.121 0.879 7 O -0.339 6.339 8 C 0.004 3.996 9 N -0.311 5.311 10 C 0.022 3.978 11 C -0.390 4.390 12 H 0.084 0.916 13 C -0.193 4.193 14 N -0.547 5.547 15 Si 0.734 3.266 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.217 1.217 19 N -0.151 5.151 20 C -0.044 4.044 21 N -0.131 5.131 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.161 0.839 26 H 0.214 0.786 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.652 -7.897 -4.698 14.068 hybrid contribution 0.638 0.703 0.205 0.972 sum -10.013 -7.194 -4.493 13.123 Atomic orbital electron populations 1.20124 0.87000 1.03002 1.02592 1.22221 0.96676 0.90906 0.99869 1.20969 0.90974 0.99589 1.18975 1.22378 0.98637 0.85015 0.99366 1.21562 0.89820 0.83782 0.97014 0.87878 1.86647 1.55849 1.36276 1.55159 1.21254 0.91026 0.95736 0.91589 1.43754 1.00769 1.02083 1.84462 1.20784 0.95680 0.82795 0.98556 1.19162 0.84992 0.97373 1.37485 0.91637 1.25007 0.98541 0.97552 0.98229 1.70085 1.29987 1.14259 1.40417 0.86205 0.84924 0.78115 0.77374 1.20333 1.21512 1.21699 1.48315 1.05282 1.04226 1.57243 1.21894 0.84206 0.94937 1.03316 1.77209 0.86483 1.22851 1.26515 0.90864 0.91254 0.90558 0.83922 0.78587 0.93636 0.92773 0.95315 0.94182 0.97883 0.93721 0.90909 0.88846 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.45 36.01 0.38 -0.33 16 2 C 0.07 1.02 7.22 -82.41 -0.59 0.42 16 3 C -0.28 -4.15 10.10 -40.01 -0.40 -4.56 16 4 C 0.08 1.22 6.00 -82.26 -0.49 0.73 16 5 C 0.14 2.52 3.33 -27.88 -0.09 2.43 16 6 H 0.10 1.94 7.51 -51.93 -0.39 1.55 16 7 O -0.54 -9.56 12.02 -35.23 -0.42 -9.99 16 8 C 0.13 2.66 5.32 -4.04 -0.02 2.64 16 9 N -0.59 -14.49 2.84 -181.12 -0.51 -15.00 16 10 C 0.17 4.05 8.66 59.85 0.52 4.57 16 11 C -0.26 -7.01 9.65 -15.06 -0.15 -7.15 16 12 H 0.07 1.70 7.87 -52.49 -0.41 1.28 16 13 C 0.01 0.15 5.09 -17.43 -0.09 0.06 16 14 N -0.90 -26.15 10.76 55.49 0.60 -25.55 16 15 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 N -0.37 -5.86 4.01 -63.89 -0.26 -6.12 16 20 C 0.10 1.22 11.06 59.85 0.66 1.88 16 21 N -0.31 -5.06 12.58 33.67 0.42 -4.63 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.14 1.82 7.57 -52.49 -0.40 1.42 16 26 H 0.37 5.28 7.95 45.56 0.36 5.64 16 27 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 29 H 0.03 0.76 7.33 -51.93 -0.38 0.38 16 30 H 0.04 1.06 7.37 -51.93 -0.38 0.68 16 31 H 0.00 0.06 7.00 -51.93 -0.36 -0.31 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.15 7.56 -51.93 -0.39 0.76 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -32.40 295.26 -5.48 -37.88 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.44 Total: 1.74 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.28 Total: 0.70 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.25 Total: -51.31 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.42 Total: -9.99 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.40 -5.48 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259655055.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.239 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds