Wall clock time and date at job start Mon Mar 30 2020 03:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46820 * 2 1 4 4 C 1.52992 * 109.47194 * 119.99915 * 2 1 3 5 5 N 1.46500 * 109.47249 * 65.00055 * 4 2 1 6 6 N 1.28787 * 125.45088 * 270.00282 * 5 4 2 7 7 N 1.28998 * 108.72507 * 179.72513 * 6 5 4 8 8 C 1.33312 * 107.35282 * 0.43135 * 7 6 5 9 9 C 1.50700 * 126.54430 * 179.83899 * 8 7 6 10 10 H 1.09009 * 109.47161 * 164.68460 * 9 8 7 11 11 N 1.46899 * 109.47601 * 44.68801 * 9 8 7 12 12 C 1.52996 * 109.47144 * 284.68183 * 9 8 7 13 13 C 1.50702 * 109.47159 * 185.00130 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 N 1.28883 * 125.45066 * 89.99635 * 5 4 2 22 22 H 1.09001 * 109.47189 * 299.99813 * 1 2 3 23 23 H 1.08994 * 109.47093 * 60.00177 * 1 2 3 24 24 H 1.09002 * 109.46677 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46712 * 239.99975 * 2 1 3 26 26 H 1.08996 * 109.47040 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.47174 * 299.99758 * 3 2 1 28 28 H 1.09005 * 109.47408 * 59.99744 * 3 2 1 29 29 H 1.09004 * 109.47263 * 304.99939 * 4 2 1 30 30 H 1.08994 * 109.47332 * 185.00368 * 4 2 1 31 31 H 1.00901 * 110.99243 * 299.99615 * 11 9 8 32 32 H 1.00899 * 111.00294 * 63.95163 * 11 9 8 33 33 H 1.09004 * 109.47066 * 65.00333 * 12 9 8 34 34 H 1.08994 * 109.47405 * 305.00163 * 12 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1906 6 7 0.5585 -2.6270 1.6568 7 7 0.5463 -3.8962 1.4266 8 6 1.6841 -4.1978 0.8008 9 6 2.1166 -5.5638 0.3338 10 1 2.9429 -5.4625 -0.3698 11 7 0.9896 -6.2347 -0.3279 12 6 2.5696 -6.3941 1.5364 13 6 3.1167 -7.7142 1.0579 14 1 3.1395 -7.9385 0.0016 15 6 3.5941 -8.6333 1.9681 16 7 3.5668 -8.3601 3.2543 17 14 4.2793 -10.2665 1.3745 18 1 4.1983 -10.3282 -0.1070 19 1 5.6973 -10.3917 1.7979 20 1 3.4878 -11.3779 1.9606 21 7 2.3519 -3.0787 0.6640 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6054 -0.2617 2.1369 30 1 3.1263 -0.6442 1.2951 31 1 0.2103 -6.3407 0.3042 32 1 0.7135 -5.7396 -1.1626 33 1 1.7205 -6.5706 2.1967 34 1 3.3458 -5.8544 2.0789 35 1 3.9023 -9.0069 3.8947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:33 Heat of formation + Delta-G solvation = 83.267816 kcal Electronic energy + Delta-G solvation = -16948.858273 eV Core-core repulsion = 14211.426097 eV Total energy + Delta-G solvation = -2737.432176 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.34916 -38.34591 -37.21847 -34.87002 -34.58997 -33.21434 -30.31713 -28.77685 -28.11566 -26.79061 -24.55401 -23.93107 -21.90017 -21.46392 -18.69529 -18.55643 -18.01748 -16.93202 -16.38696 -16.18680 -16.02809 -15.20479 -15.03980 -14.61101 -14.23640 -14.05258 -13.61545 -13.24282 -13.13797 -12.89929 -12.82234 -12.68153 -12.48200 -12.31163 -12.15273 -11.96934 -11.90582 -11.84615 -11.64182 -11.25344 -10.82178 -10.52370 -9.77731 -8.12013 -6.19190 0.19232 1.04947 1.11200 1.46220 1.47179 1.61438 2.48544 2.91481 3.21126 3.25462 3.49164 3.67327 3.87248 3.91865 4.19532 4.27627 4.47932 4.48884 4.54493 4.72494 4.73262 4.80522 4.85909 4.97024 5.09104 5.22158 5.25026 5.37546 5.39623 5.57319 5.85310 6.16689 6.34143 6.64935 6.94466 7.34165 7.47810 9.01155 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.051431 B = 0.004668 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.286414 B = 5996.362040 C = 6093.175983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.113 3.887 5 N -0.125 5.125 6 N -0.074 5.074 7 N -0.311 5.311 8 C 0.136 3.864 9 C 0.206 3.794 10 H 0.100 0.900 11 N -0.807 5.807 12 C 0.049 3.951 13 C -0.505 4.505 14 H 0.071 0.929 15 C -0.006 4.006 16 N -0.942 5.942 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.283 1.283 21 N -0.317 5.317 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.346 0.654 32 H 0.342 0.658 33 H -0.006 1.006 34 H -0.011 1.011 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 20.232 -7.192 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.194 4.194 4 C -0.004 4.004 5 N -0.039 5.039 6 N -0.066 5.066 7 N -0.181 5.181 8 C -0.150 4.150 9 C 0.089 3.911 10 H 0.118 0.882 11 N -0.336 5.336 12 C 0.010 3.990 13 C -0.543 4.543 14 H 0.089 0.911 15 C -0.203 4.203 16 N -0.583 5.583 17 Si 0.794 3.206 18 H -0.183 1.183 19 H -0.207 1.207 20 H -0.209 1.209 21 N -0.168 5.168 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.012 0.988 34 H 0.007 0.993 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.311 20.042 -6.848 21.437 hybrid contribution 0.074 -0.401 0.277 0.493 sum -3.237 19.641 -6.571 20.963 Atomic orbital electron populations 1.21910 0.94390 1.00874 1.03716 1.21486 0.96851 0.98474 0.95500 1.21739 1.02012 0.91732 1.03923 1.23073 1.04684 0.69324 1.03365 1.50640 1.09683 1.11252 1.32373 1.78766 1.07526 1.03705 1.16632 1.75710 1.21373 1.04178 1.16877 1.27541 0.89727 0.98415 0.99267 1.19936 0.94334 0.79868 0.96915 0.88228 1.58840 1.11245 1.53382 1.10089 1.18889 0.94397 0.94222 0.91450 1.21455 1.38448 1.00524 0.93909 0.91091 1.25965 0.96720 1.02666 0.94904 1.70136 1.48824 1.37107 1.02244 0.85340 0.77543 0.78785 0.78980 1.18311 1.20743 1.20883 1.74663 1.23992 0.97201 1.20966 0.90608 0.90805 0.95646 0.91425 0.91054 0.90817 0.90512 0.84416 0.85014 0.84107 0.84469 0.98814 0.99293 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.00 71.98 0.65 -1.77 16 2 C -0.10 -1.46 3.13 -10.80 -0.03 -1.50 16 3 C -0.14 -1.05 9.19 71.98 0.66 -0.39 16 4 C 0.11 1.96 6.00 86.38 0.52 2.48 16 5 N -0.13 -3.76 3.68 -187.69 -0.69 -4.45 16 6 N -0.07 -2.56 12.18 37.02 0.45 -2.11 16 7 N -0.31 -12.63 12.40 -51.27 -0.64 -13.27 16 8 C 0.14 5.52 7.18 138.55 0.99 6.51 16 9 C 0.21 8.91 3.24 44.17 0.14 9.05 16 10 H 0.10 4.22 8.14 -2.38 -0.02 4.20 16 11 N -0.81 -31.24 8.94 -171.80 -1.54 -32.77 16 12 C 0.05 2.67 4.60 29.85 0.14 2.81 16 13 C -0.51 -29.02 8.84 25.60 0.23 -28.79 16 14 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 15 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 16 N -0.94 -58.86 13.29 21.45 0.28 -58.58 16 17 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 N -0.32 -11.49 12.13 -51.21 -0.62 -12.11 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 24 H 0.02 0.57 6.92 -2.39 -0.02 0.55 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.35 13.59 8.90 -89.69 -0.80 12.79 16 32 H 0.34 10.99 9.06 -89.69 -0.81 10.17 16 33 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -72.13 300.59 2.52 -69.61 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.51 Total: 17.62 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 3.76 Total: -11.50 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -2.75 Total: -123.28 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -72.13 2.52 -69.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.874 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds