Wall clock time and date at job start Mon Mar 30 2020 03:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35763 * 117.00049 * 2 1 4 4 C 1.35950 * 126.19578 * 266.25570 * 3 2 1 5 5 C 1.50694 * 126.07914 * 0.03595 * 4 3 2 6 6 H 1.08999 * 109.47264 * 0.27717 * 5 4 3 7 7 C 1.53002 * 109.47072 * 240.28249 * 5 4 3 8 8 N 1.46897 * 109.47452 * 65.00120 * 7 5 4 9 9 C 1.52995 * 109.47230 * 120.28177 * 5 4 3 10 10 C 1.50709 * 109.47450 * 184.99864 * 9 5 4 11 11 H 1.08001 * 119.99616 * 359.97438 * 10 9 5 12 12 C 1.37873 * 120.00259 * 180.02562 * 10 9 5 13 13 N 1.31516 * 119.99946 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00160 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47139 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47620 * 119.99705 * 14 12 10 17 17 H 1.48498 * 109.47104 * 239.99714 * 14 12 10 18 18 C 1.39810 * 107.83225 * 180.29605 * 4 3 2 19 19 N 1.30833 * 108.28573 * 359.73442 * 18 4 3 20 20 N 1.35131 * 126.18942 * 86.10462 * 3 2 1 21 21 C 1.46496 * 126.03953 * 359.96950 * 20 3 2 22 22 H 1.09002 * 109.47170 * 301.41883 * 1 2 3 23 23 H 1.09003 * 109.47061 * 61.41519 * 1 2 3 24 24 H 1.08993 * 109.46983 * 181.41713 * 1 2 3 25 25 H 1.09001 * 109.47326 * 185.00741 * 7 5 4 26 26 H 1.09009 * 109.46860 * 304.99775 * 7 5 4 27 27 H 1.00896 * 110.99949 * 56.04347 * 8 7 5 28 28 H 1.00898 * 111.00027 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47564 * 304.99596 * 9 5 4 30 30 H 1.09002 * 109.47543 * 64.99559 * 9 5 4 31 31 H 0.96999 * 120.00442 * 180.02562 * 13 12 10 32 32 H 1.08007 * 125.85607 * 179.70809 * 18 4 3 33 33 H 1.09006 * 109.47288 * 274.82785 * 21 20 3 34 34 H 1.09001 * 109.47306 * 34.82611 * 21 20 3 35 35 H 1.09004 * 109.47483 * 154.83441 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 2.4737 1.8925 -1.0948 5 6 2.3483 1.4415 -2.5272 6 1 1.8507 0.4723 -2.5607 7 6 3.7416 1.3210 -3.1478 8 7 4.4896 0.2547 -2.4688 9 6 1.5262 2.4643 -3.3138 10 6 1.2966 1.9549 -4.7134 11 1 1.6972 0.9975 -5.0121 12 6 0.5758 2.7115 -5.6129 13 7 0.0883 3.8776 -5.2493 14 14 0.2906 2.0798 -7.3474 15 1 0.9371 0.7520 -7.5032 16 1 -1.1682 1.9524 -7.5943 17 1 0.8765 3.0328 -8.3240 18 6 3.0566 3.0847 -0.6548 19 7 2.9781 3.1227 0.6506 20 7 2.3416 1.9542 1.0881 21 6 2.0536 1.5991 2.4799 22 1 -0.3633 0.5357 0.8770 23 1 -0.3633 0.4917 -0.9024 24 1 -0.3633 -1.0273 0.0254 25 1 3.6480 1.0815 -4.2071 26 1 4.2726 2.2663 -3.0347 27 1 3.9861 -0.6190 -2.5039 28 1 5.4141 0.1556 -2.8606 29 1 0.5662 2.6159 -2.8203 30 1 2.0666 3.4101 -3.3555 31 1 -0.4190 4.4098 -5.8819 32 1 3.4966 3.8438 -1.2846 33 1 1.0362 1.9011 2.7289 34 1 2.1544 0.5214 2.6083 35 1 2.7558 2.1108 3.1382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:41 Heat of formation + Delta-G solvation = 35.042366 kcal Electronic energy + Delta-G solvation = -17553.343293 eV Core-core repulsion = 14781.527153 eV Total energy + Delta-G solvation = -2771.816140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.94753 -37.58340 -35.93069 -32.77455 -32.68236 -30.68195 -28.86339 -26.82673 -26.32391 -24.85907 -22.71386 -21.40514 -20.43482 -18.95669 -17.36070 -16.32551 -15.93162 -15.25722 -15.00909 -14.63164 -14.33088 -14.11649 -13.70903 -13.43021 -13.21488 -12.69250 -12.50038 -12.16559 -11.68301 -11.63335 -11.35505 -11.05592 -10.87512 -10.58136 -10.38576 -9.95438 -9.60864 -9.44066 -9.04451 -8.78756 -8.35338 -7.98231 -7.60233 -5.98831 -4.00859 2.07044 2.74433 3.29872 3.30482 3.38422 3.41539 4.05420 4.46076 4.82300 5.24422 5.26752 5.28387 5.37414 5.46277 5.48511 5.50423 5.75128 5.88391 6.00298 6.18533 6.33456 6.50093 6.60709 6.77718 6.94439 7.09056 7.19007 7.67051 7.79991 7.86198 7.91090 7.99242 8.05800 8.14775 8.43120 9.05642 9.62700 11.12108 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.006786 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.159960 B = 4124.858686 C = 4245.719486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.232 3.768 4 C -0.173 4.173 5 C -0.005 4.005 6 H 0.061 0.939 7 C 0.077 3.923 8 N -0.851 5.851 9 C 0.034 3.966 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.067 3.933 19 N -0.292 5.292 20 N -0.392 5.392 21 C 0.105 3.895 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.333 0.667 28 H 0.327 0.673 29 H 0.015 0.985 30 H 0.019 0.981 31 H 0.259 0.741 32 H 0.182 0.818 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -6.404 10.911 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.066 3.934 4 C -0.185 4.185 5 C -0.025 4.025 6 H 0.079 0.921 7 C -0.053 4.053 8 N -0.379 5.379 9 C -0.003 4.003 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.118 4.118 19 N -0.116 5.116 20 N -0.186 5.186 21 C -0.037 4.037 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.199 0.801 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.068 -5.436 12.658 14.113 hybrid contribution -0.680 -1.047 -2.513 2.806 sum 2.388 -6.483 10.145 12.274 Atomic orbital electron populations 1.23116 0.78823 1.03200 1.01439 1.86083 1.20173 1.22061 1.93291 1.18699 1.01255 0.86499 0.86958 1.19994 1.07710 0.95324 0.95475 1.19684 0.95182 1.00116 0.87484 0.92078 1.21799 0.93838 0.94084 0.95558 1.58799 1.06060 1.10164 1.62875 1.19094 0.94324 0.93371 0.93534 1.21274 1.33296 1.04231 0.96615 0.92670 1.24999 0.95883 0.94960 0.98498 1.69976 1.36389 1.11786 1.35126 0.86608 0.77858 0.78892 0.85063 1.19838 1.21118 1.21063 1.23490 0.98984 0.97838 0.91501 1.77327 1.19354 1.01603 1.13344 1.48703 1.48459 1.15543 1.05855 1.21667 1.01602 1.01425 0.78972 0.94140 0.92019 0.88567 0.94161 0.91962 0.85525 0.86207 0.96640 0.96223 0.93112 0.80126 0.91722 0.90125 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.13 101.05 1.12 1.52 16 2 O -0.31 -5.13 10.25 -19.00 -0.19 -5.33 16 3 C 0.23 4.26 6.94 -16.92 -0.12 4.14 16 4 C -0.17 -3.43 4.55 -104.86 -0.48 -3.91 16 5 C 0.00 -0.09 2.32 -91.78 -0.21 -0.31 16 6 H 0.06 1.32 7.89 -51.93 -0.41 0.91 16 7 C 0.08 1.47 6.01 -3.82 -0.02 1.45 16 8 N -0.85 -13.90 9.34 -10.37 -0.10 -14.00 16 9 C 0.03 0.87 4.31 -27.88 -0.12 0.75 16 10 C -0.52 -14.02 8.34 -34.44 -0.29 -14.31 16 11 H 0.06 1.46 7.08 -52.49 -0.37 1.09 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 C 0.07 1.27 11.44 -17.39 -0.20 1.07 16 19 N -0.29 -5.44 12.57 30.61 0.38 -5.06 16 20 N -0.39 -6.68 4.02 -68.28 -0.27 -6.95 16 21 C 0.11 1.24 11.42 59.84 0.68 1.92 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.82 6.82 -51.93 -0.35 0.46 16 26 H 0.06 1.18 7.88 -51.92 -0.41 0.77 16 27 H 0.33 5.23 8.99 -39.29 -0.35 4.88 16 28 H 0.33 4.57 9.08 -39.29 -0.36 4.21 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.18 3.15 8.06 -52.48 -0.42 2.73 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -31.96 301.45 -4.84 -36.80 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.19 Total: 5.56 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 0.27 Total: -6.15 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.75 Total: -51.66 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.96 -4.84 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.843 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds