Wall clock time and date at job start Mon Mar 30 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35763 * 117.00049 * 2 1 4 4 C 1.35950 * 126.19578 * 266.25570 * 3 2 1 5 5 C 1.50694 * 126.07914 * 0.03595 * 4 3 2 6 6 H 1.08999 * 109.47264 * 0.27717 * 5 4 3 7 7 C 1.53002 * 109.47072 * 240.28249 * 5 4 3 8 8 N 1.46897 * 109.47452 * 65.00120 * 7 5 4 9 9 C 1.52995 * 109.47230 * 120.28177 * 5 4 3 10 10 C 1.50709 * 109.47450 * 184.99864 * 9 5 4 11 11 H 1.08001 * 119.99616 * 359.97438 * 10 9 5 12 12 C 1.37873 * 120.00259 * 180.02562 * 10 9 5 13 13 N 1.31516 * 119.99946 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00160 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47139 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47620 * 119.99705 * 14 12 10 17 17 H 1.48498 * 109.47104 * 239.99714 * 14 12 10 18 18 C 1.39810 * 107.83225 * 180.29605 * 4 3 2 19 19 N 1.30833 * 108.28573 * 359.73442 * 18 4 3 20 20 N 1.35131 * 126.18942 * 86.10462 * 3 2 1 21 21 C 1.46496 * 126.03953 * 359.96950 * 20 3 2 22 22 H 1.09002 * 109.47170 * 301.41883 * 1 2 3 23 23 H 1.09003 * 109.47061 * 61.41519 * 1 2 3 24 24 H 1.08993 * 109.46983 * 181.41713 * 1 2 3 25 25 H 1.09001 * 109.47326 * 185.00741 * 7 5 4 26 26 H 1.09009 * 109.46860 * 304.99775 * 7 5 4 27 27 H 1.00896 * 110.99949 * 56.04347 * 8 7 5 28 28 H 1.00898 * 111.00027 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47564 * 304.99596 * 9 5 4 30 30 H 1.09002 * 109.47543 * 64.99559 * 9 5 4 31 31 H 0.96999 * 120.00442 * 180.02562 * 13 12 10 32 32 H 1.08007 * 125.85607 * 179.70809 * 18 4 3 33 33 H 1.09006 * 109.47288 * 274.82785 * 21 20 3 34 34 H 1.09001 * 109.47306 * 34.82611 * 21 20 3 35 35 H 1.09004 * 109.47483 * 154.83441 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 2.4737 1.8925 -1.0948 5 6 2.3483 1.4415 -2.5272 6 1 1.8507 0.4723 -2.5607 7 6 3.7416 1.3210 -3.1478 8 7 4.4896 0.2547 -2.4688 9 6 1.5262 2.4643 -3.3138 10 6 1.2966 1.9549 -4.7134 11 1 1.6972 0.9975 -5.0121 12 6 0.5758 2.7115 -5.6129 13 7 0.0883 3.8776 -5.2493 14 14 0.2906 2.0798 -7.3474 15 1 0.9371 0.7520 -7.5032 16 1 -1.1682 1.9524 -7.5943 17 1 0.8765 3.0328 -8.3240 18 6 3.0566 3.0847 -0.6548 19 7 2.9781 3.1227 0.6506 20 7 2.3416 1.9542 1.0881 21 6 2.0536 1.5991 2.4799 22 1 -0.3633 0.5357 0.8770 23 1 -0.3633 0.4917 -0.9024 24 1 -0.3633 -1.0273 0.0254 25 1 3.6480 1.0815 -4.2071 26 1 4.2726 2.2663 -3.0347 27 1 3.9861 -0.6190 -2.5039 28 1 5.4141 0.1556 -2.8606 29 1 0.5662 2.6159 -2.8203 30 1 2.0666 3.4101 -3.3555 31 1 -0.4190 4.4098 -5.8819 32 1 3.4966 3.8438 -1.2846 33 1 1.0362 1.9011 2.7289 34 1 2.1544 0.5214 2.6083 35 1 2.7558 2.1108 3.1382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:40 Heat of formation + Delta-G solvation = 10.848721 kcal Electronic energy + Delta-G solvation = -17554.392408 eV Core-core repulsion = 14781.527153 eV Total energy + Delta-G solvation = -2772.865255 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.34122 -38.87760 -37.57270 -34.77440 -33.94786 -32.32238 -30.34520 -28.32339 -27.51814 -26.46785 -24.52929 -22.99907 -21.79898 -20.49970 -18.83348 -18.25559 -17.21119 -16.72749 -16.47587 -16.30305 -15.71462 -15.46714 -15.10940 -14.99359 -14.56211 -14.35618 -13.75639 -13.49150 -13.31477 -13.16690 -12.85320 -12.75644 -12.62750 -12.40077 -11.95135 -11.57683 -11.45209 -11.07834 -10.98275 -10.50971 -10.13221 -9.38686 -9.08071 -8.13536 -6.23190 0.70023 1.41727 1.42810 1.47934 1.54877 1.83891 2.44440 2.79882 3.19535 3.61998 3.88143 4.21309 4.30343 4.36780 4.39205 4.43493 4.47336 4.62423 4.68468 4.70287 4.83752 4.97477 5.09708 5.18941 5.32424 5.44335 5.56425 5.69743 5.84472 5.91980 6.29764 6.40386 6.58771 6.73218 6.79340 6.92477 7.44959 8.98006 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.006786 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.159960 B = 4124.858686 C = 4245.719486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.237 3.763 4 C -0.205 4.205 5 C 0.012 3.988 6 H 0.052 0.948 7 C 0.088 3.912 8 N -0.845 5.845 9 C 0.047 3.953 10 C -0.526 4.526 11 H 0.061 0.939 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.958 3.042 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.054 3.946 19 N -0.302 5.302 20 N -0.387 5.387 21 C 0.093 3.907 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.131 0.869 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.339 0.661 28 H 0.344 0.656 29 H -0.018 1.018 30 H -0.003 1.003 31 H 0.261 0.739 32 H 0.186 0.814 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 -7.995 11.556 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.070 3.930 4 C -0.216 4.216 5 C -0.008 4.008 6 H 0.070 0.930 7 C -0.042 4.042 8 N -0.375 5.375 9 C 0.009 3.991 10 C -0.564 4.564 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.783 3.217 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.130 4.130 19 N -0.128 5.128 20 N -0.180 5.180 21 C -0.047 4.047 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.149 0.851 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.000 1.000 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.203 0.797 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.251 -7.045 13.328 15.422 hybrid contribution -0.774 -0.594 -2.587 2.765 sum 2.477 -7.638 10.740 13.410 Atomic orbital electron populations 1.23323 0.76917 1.05475 1.01017 1.86060 1.21831 1.21082 1.93311 1.18718 1.00488 0.86669 0.87154 1.19901 1.09972 0.96518 0.95238 1.19328 0.95372 0.97955 0.88167 0.92982 1.21547 0.93131 0.94945 0.94607 1.58681 1.06679 1.09746 1.62392 1.18891 0.93083 0.93717 0.93422 1.21630 1.32936 1.04361 0.97521 0.92129 1.25884 0.95656 0.95100 1.02914 1.70113 1.37325 1.13181 1.36719 0.85505 0.77793 0.78714 0.79674 1.18588 1.20735 1.20631 1.23601 0.99474 0.97976 0.91956 1.77269 1.19908 1.02627 1.12961 1.49066 1.47029 1.14485 1.07391 1.22115 1.03235 1.02963 0.76368 0.92282 0.94596 0.85096 0.95638 0.92257 0.84866 0.84350 1.00009 0.98422 0.92996 0.79714 0.89745 0.88226 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.13 113.37 1.26 1.95 16 2 O -0.31 -9.96 10.25 -90.90 -0.93 -10.89 16 3 C 0.24 8.51 6.94 83.65 0.58 9.09 16 4 C -0.20 -8.15 4.55 -20.02 -0.09 -8.25 16 5 C 0.01 0.51 2.32 -11.54 -0.03 0.48 16 6 H 0.05 2.28 7.89 -2.39 -0.02 2.26 16 7 C 0.09 3.37 6.01 86.30 0.52 3.89 16 8 N -0.85 -26.62 9.34 -186.71 -1.74 -28.37 16 9 C 0.05 2.44 4.31 29.85 0.13 2.57 16 10 C -0.53 -29.11 8.34 25.60 0.21 -28.90 16 11 H 0.06 3.22 7.08 -2.91 -0.02 3.20 16 12 C 0.00 0.11 5.46 84.65 0.46 0.57 16 13 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 14 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 C 0.05 2.08 11.44 85.22 0.97 3.05 16 19 N -0.30 -11.09 12.57 -57.06 -0.72 -11.81 16 20 N -0.39 -12.54 4.02 -481.25 -1.93 -14.47 16 21 C 0.09 1.92 11.42 127.77 1.46 3.38 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.03 1.04 6.82 -2.39 -0.02 1.02 16 26 H 0.06 2.28 7.88 -2.38 -0.02 2.26 16 27 H 0.34 10.17 8.99 -89.70 -0.81 9.36 16 28 H 0.34 9.02 9.08 -89.70 -0.81 8.21 16 29 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.19 6.68 8.06 -2.91 -0.02 6.66 16 33 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -69.00 301.45 1.94 -67.06 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.52 Total: 20.93 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.48 Total: -12.16 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.11 Total: -110.70 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.93 Total: -10.89 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -69.00 1.94 -67.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.907 kcal (2) G-P(sol) polarization free energy of solvation -69.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds