Wall clock time and date at job start Mon Mar 30 2020 03:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46906 * 111.00136 * 2 1 4 4 C 1.53003 * 109.47132 * 66.04414 * 3 2 1 5 5 O 1.42903 * 109.46910 * 65.00194 * 4 3 2 6 6 C 1.42898 * 113.99495 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46782 * 180.02562 * 6 5 4 8 8 H 1.08006 * 120.00407 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99967 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00128 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99990 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47035 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47066 * 119.99455 * 11 9 7 14 14 H 1.48496 * 109.46770 * 239.99634 * 11 9 7 15 15 C 1.46901 * 111.00243 * 236.04528 * 2 1 3 16 16 C 1.50701 * 109.46921 * 293.95400 * 15 2 1 17 17 C 1.34518 * 125.78686 * 90.00190 * 16 15 2 18 18 C 1.41377 * 106.84005 * 180.02562 * 17 16 15 19 19 C 1.34516 * 106.84066 * 359.97438 * 18 17 16 20 20 O 1.34297 * 125.79120 * 269.69513 * 16 15 2 21 21 H 1.08999 * 109.47439 * 183.95618 * 1 2 3 22 22 H 1.08997 * 109.47257 * 303.95746 * 1 2 3 23 23 H 1.09006 * 109.46808 * 63.95302 * 1 2 3 24 24 H 1.09000 * 109.47257 * 186.04513 * 3 2 1 25 25 H 1.09006 * 109.46871 * 306.04551 * 3 2 1 26 26 H 1.09001 * 109.46759 * 185.00305 * 4 3 2 27 27 H 1.08999 * 109.47139 * 305.00070 * 4 3 2 28 28 H 1.09000 * 109.46976 * 299.99673 * 6 5 4 29 29 H 1.08997 * 109.47644 * 60.00063 * 6 5 4 30 30 H 0.96994 * 119.99993 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47401 * 173.95428 * 15 2 1 32 32 H 1.09001 * 109.46874 * 53.95440 * 15 2 1 33 33 H 1.07998 * 126.58160 * 0.02916 * 17 16 15 34 34 H 1.08001 * 126.58576 * 179.97438 * 18 17 16 35 35 H 1.08005 * 125.79342 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 8 2.2956 1.3976 2.3979 6 6 2.0212 1.9629 3.6813 7 6 2.7695 1.1936 4.7393 8 1 3.3920 0.3565 4.4596 9 6 2.6587 1.5578 6.0645 10 7 1.9004 2.5769 6.4052 11 14 3.5858 0.6038 7.3760 12 1 4.3619 -0.4892 6.7373 13 1 4.5129 1.5177 8.0905 14 1 2.6189 0.0243 8.3427 15 6 1.9954 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9728 17 6 0.5188 -2.8118 -1.4307 18 6 0.5921 -4.1728 -1.0552 19 6 1.7508 -4.3319 -0.3907 20 8 2.3821 -3.1472 -0.3489 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3633 0.4513 -0.9234 24 1 3.0797 1.3444 -0.1082 25 1 1.5611 1.9274 -0.8310 26 1 1.9438 3.1012 1.2830 27 1 0.5531 2.0059 1.4691 28 1 2.3414 3.0047 3.6954 29 1 0.9511 1.9090 3.8810 30 1 1.8228 2.8333 7.3374 31 1 3.0797 -0.6611 -1.1756 32 1 1.5611 -0.3872 -2.0628 33 1 -0.2813 -2.3378 -1.9799 34 1 -0.1415 -4.9380 -1.2620 35 1 2.1141 -5.2565 0.0332 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293636082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:00 Heat of formation + Delta-G solvation = -47.430469 kcal Electronic energy + Delta-G solvation = -16761.659764 eV Core-core repulsion = 13953.974583 eV Total energy + Delta-G solvation = -2807.685181 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.42550 -39.28603 -37.71663 -34.91723 -33.88083 -32.20676 -30.23104 -28.80821 -28.04392 -25.06372 -24.42676 -22.60062 -21.99077 -21.24325 -18.63582 -18.17441 -17.56709 -17.46696 -16.68740 -16.50796 -15.97383 -15.82325 -15.51411 -14.97272 -14.42652 -13.80302 -13.69279 -13.64786 -13.51726 -13.39981 -13.05390 -12.76483 -12.71480 -12.57605 -12.24901 -12.19158 -11.73690 -11.23253 -10.85350 -10.78068 -10.16519 -9.45731 -9.14593 -8.31941 -6.43624 0.82302 1.38927 1.40644 1.55703 1.73208 2.20214 2.35392 3.01549 3.04488 3.27571 3.82864 4.06315 4.16463 4.21423 4.25044 4.32832 4.42144 4.53942 4.56943 4.64117 4.70317 4.83792 4.95214 4.97101 5.03480 5.08074 5.19803 5.25461 5.55960 5.66916 5.97886 6.07170 6.07394 6.31802 6.57911 6.87850 7.28842 8.80734 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.005227 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.848261 B = 5355.689409 C = 6147.472385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.560 5.560 3 C 0.071 3.929 4 C 0.054 3.946 5 O -0.398 6.398 6 C 0.209 3.791 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.982 3.018 12 H -0.267 1.267 13 H -0.268 1.268 14 H -0.271 1.271 15 C 0.134 3.866 16 C -0.020 4.020 17 C -0.211 4.211 18 C -0.225 4.225 19 C -0.051 4.051 20 O -0.197 6.197 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.039 0.961 28 H -0.014 1.014 29 H -0.019 1.019 30 H 0.271 0.729 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.956 -8.905 -17.736 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.286 5.286 3 C -0.056 4.056 4 C -0.024 4.024 5 O -0.317 6.317 6 C 0.134 3.866 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.191 4.191 10 N -0.570 5.570 11 Si 0.805 3.195 12 H -0.191 1.191 13 H -0.193 1.193 14 H -0.196 1.196 15 C 0.008 3.992 16 C -0.070 4.070 17 C -0.231 4.231 18 C -0.244 4.244 19 C -0.119 4.119 20 O -0.093 6.093 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.003 0.997 29 H -0.001 1.001 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.453 -9.107 -17.062 19.495 hybrid contribution -0.457 0.339 0.234 0.615 sum -2.909 -8.768 -16.829 19.198 Atomic orbital electron populations 1.22438 0.86631 1.02340 1.00915 1.61660 1.08985 1.14432 1.43473 1.22099 1.01241 0.87528 0.94692 1.22671 0.96112 0.95500 0.88079 1.87912 1.70540 1.57779 1.15507 1.19781 0.93815 0.92476 0.80505 1.21406 1.29113 1.15821 0.91980 0.92502 1.25942 0.96276 0.96233 1.00676 1.70071 1.39864 1.28211 1.18895 0.85157 0.78308 0.78422 0.77644 1.19121 1.19337 1.19572 1.20529 1.01748 0.84202 0.92769 1.22593 0.93104 0.91898 0.99440 1.21863 0.99310 0.95019 1.06894 1.22157 0.99975 0.97674 1.04622 1.24765 0.94654 0.88467 1.03988 1.84046 1.45677 1.18490 1.61129 0.91564 0.92746 0.93040 0.89927 0.90040 0.93105 0.94265 0.99651 1.00125 0.92044 0.89155 0.88940 0.82012 0.81264 0.75449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.08 127.69 1.16 1.81 16 2 N -0.56 -16.97 4.70 -927.03 -4.36 -21.33 16 3 C 0.07 2.05 5.34 86.30 0.46 2.51 16 4 C 0.05 2.03 6.00 71.98 0.43 2.46 16 5 O -0.40 -20.49 10.27 -148.98 -1.53 -22.02 16 6 C 0.21 12.30 5.69 71.24 0.41 12.70 16 7 C -0.55 -34.00 9.43 25.60 0.24 -33.76 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.01 0.42 5.46 84.65 0.46 0.88 16 10 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 11 Si 0.98 45.87 29.54 68.60 2.03 47.90 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 C 0.13 3.25 5.50 85.56 0.47 3.72 16 16 C -0.02 -0.54 6.22 24.83 0.15 -0.38 16 17 C -0.21 -4.81 9.40 22.19 0.21 -4.60 16 18 C -0.23 -4.77 10.91 22.19 0.24 -4.53 16 19 C -0.05 -1.17 12.09 66.97 0.81 -0.36 16 20 O -0.20 -5.93 10.65 -2.43 -0.03 -5.95 16 21 H 0.07 1.80 6.31 -2.39 -0.02 1.78 16 22 H 0.05 1.66 6.21 -2.39 -0.01 1.65 16 23 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.08 2.36 7.93 -2.39 -0.02 2.34 16 25 H 0.08 1.70 8.12 -2.38 -0.02 1.68 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.46 6.26 -2.39 -0.01 1.45 16 28 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.09 2.16 7.93 -2.39 -0.02 2.14 16 32 H 0.09 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -74.26 298.64 2.50 -71.76 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.06 Total: 6.20 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 5.05 Total: -19.55 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -4.07 Total: -78.34 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.56 Total: -27.97 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.26 2.50 -71.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293636082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.331 kcal (2) G-P(sol) polarization free energy of solvation -74.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds