Wall clock time and date at job start Mon Mar 30 2020 03:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47395 * 2 1 4 4 H 1.08998 * 109.47046 * 305.80979 * 3 2 1 5 5 C 1.50698 * 109.47490 * 185.80433 * 3 2 1 6 6 H 1.08004 * 119.99798 * 334.86758 * 5 3 2 7 7 C 1.37875 * 120.00269 * 154.87070 * 5 3 2 8 8 N 1.31516 * 119.99939 * 355.66492 * 7 5 3 9 9 Si 1.86799 * 119.99984 * 175.38590 * 7 5 3 10 10 H 1.48507 * 109.47087 * 90.00155 * 9 7 5 11 11 H 1.48497 * 109.47120 * 209.99753 * 9 7 5 12 12 H 1.48500 * 109.47374 * 330.00215 * 9 7 5 13 13 N 1.46504 * 109.46653 * 65.80581 * 3 2 1 14 14 C 1.39963 * 119.99617 * 274.99796 * 13 3 2 15 15 C 1.40353 * 125.93831 * 0.02562 * 14 13 3 16 16 C 1.35871 * 107.78944 * 179.97438 * 15 14 13 17 17 O 1.35747 * 126.13741 * 180.02562 * 16 15 14 18 18 C 1.42903 * 116.99857 * 184.29241 * 17 16 15 19 19 N 1.35161 * 107.72571 * 0.02562 * 16 15 14 20 20 C 1.46504 * 125.97171 * 180.02562 * 19 16 15 21 21 N 1.31237 * 125.92966 * 179.69421 * 14 13 3 22 22 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47113 * 300.00021 * 1 2 3 24 24 H 1.09001 * 109.47414 * 59.99298 * 1 2 3 25 25 H 1.09005 * 109.47204 * 240.00524 * 2 1 3 26 26 H 1.08994 * 109.47611 * 120.00350 * 2 1 3 27 27 H 0.97006 * 120.00053 * 5.00470 * 8 7 5 28 28 H 0.96993 * 120.00291 * 95.00347 * 13 3 2 29 29 H 1.08002 * 126.10925 * 359.97233 * 15 14 13 30 30 H 1.09008 * 109.46992 * 66.21249 * 18 17 16 31 31 H 1.08995 * 109.46792 * 186.21335 * 18 17 16 32 32 H 1.08997 * 109.47289 * 306.21361 * 18 17 16 33 33 H 1.09002 * 109.47244 * 82.31477 * 20 19 16 34 34 H 1.09004 * 109.46973 * 202.31255 * 20 19 16 35 35 H 1.08997 * 109.47157 * 322.31067 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9855 -0.8334 5 6 3.5401 1.4450 -0.1437 6 1 4.1142 0.5861 0.1715 7 6 4.1798 2.5435 -0.6774 8 7 3.4762 3.5540 -1.1396 9 14 6.0460 2.6002 -0.7370 10 1 6.5184 2.0139 -2.0170 11 1 6.5018 4.0101 -0.6404 12 1 6.6014 1.8214 0.3989 13 7 1.6691 2.0915 1.2600 14 6 0.4067 2.6797 1.3990 15 6 -0.5960 2.7197 0.4176 16 6 -1.6641 3.3758 0.9420 17 8 -2.8395 3.6249 0.3103 18 6 -3.7994 4.4155 1.0143 19 7 -1.3462 3.7358 2.2054 20 6 -2.2116 4.4646 3.1361 21 7 -0.0474 3.2841 2.4717 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.5113 3.5592 -1.0395 28 1 2.2983 2.1137 1.9977 29 1 -0.5303 2.3035 -0.5768 30 1 -3.4154 5.4281 1.1383 31 1 -4.7301 4.4467 0.4478 32 1 -3.9850 3.9748 1.9938 33 1 -2.8973 3.7669 3.6168 34 1 -1.5997 4.9533 3.8944 35 1 -2.7816 5.2160 2.5896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300927102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:11 Heat of formation + Delta-G solvation = 56.439878 kcal Electronic energy + Delta-G solvation = -17641.330531 eV Core-core repulsion = 14870.442257 eV Total energy + Delta-G solvation = -2770.888274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88337 -38.05282 -36.12542 -33.04142 -31.98224 -30.95998 -28.86836 -27.36868 -26.39463 -24.93655 -22.92210 -21.32743 -20.24547 -19.24879 -17.57156 -16.90560 -16.33384 -15.21476 -15.10848 -14.63857 -14.21733 -13.80929 -13.69925 -13.51426 -13.39178 -12.78778 -12.73090 -12.35537 -12.22777 -11.25473 -11.14276 -10.94665 -10.77824 -10.68855 -10.25855 -10.13672 -9.92615 -9.59746 -9.04276 -8.75569 -8.38771 -7.66853 -6.57071 -6.45943 -4.26846 2.53309 2.86951 3.24586 3.40612 3.44755 3.60388 3.87515 4.42242 4.50968 4.78571 4.82383 5.05584 5.16940 5.24298 5.45995 5.52491 5.95802 5.98126 6.05337 6.11747 6.24041 6.46630 6.56615 6.75466 6.78345 6.96016 7.04988 7.25839 7.36809 7.90024 7.93978 8.19406 8.35411 8.71279 8.89378 9.20862 9.53788 10.91004 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032259 B = 0.006637 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.761295 B = 4217.750248 C = 4510.580242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.259 3.741 4 H 0.043 0.957 5 C -0.604 4.604 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.889 5.889 9 Si 1.072 2.928 10 H -0.286 1.286 11 H -0.284 1.284 12 H -0.287 1.287 13 N -0.693 5.693 14 C 0.374 3.626 15 C -0.312 4.312 16 C 0.275 3.725 17 O -0.298 6.298 18 C 0.014 3.986 19 N -0.418 5.418 20 C 0.094 3.906 21 N -0.378 5.378 22 H 0.031 0.969 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.278 0.722 28 H 0.390 0.610 29 H 0.149 0.851 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 0.795 4.889 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.158 3.842 4 H 0.061 0.939 5 C -0.643 4.643 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.523 5.523 9 Si 0.899 3.101 10 H -0.213 1.213 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.332 5.332 14 C 0.114 3.886 15 C -0.344 4.344 16 C 0.108 3.892 17 O -0.205 6.205 18 C -0.081 4.081 19 N -0.213 5.213 20 C -0.048 4.048 21 N -0.218 5.218 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.225 0.775 29 H 0.167 0.833 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.886 1.984 5.103 12.185 hybrid contribution -1.538 -0.909 0.279 1.808 sum -12.424 1.075 5.382 13.582 Atomic orbital electron populations 1.22089 0.97669 0.99357 1.01705 1.21922 0.93855 0.99900 1.00519 1.18811 0.95028 0.87895 0.82477 0.93880 1.22113 0.91190 1.04303 1.46693 0.92604 1.25974 1.07115 0.92451 0.92164 1.70712 1.09746 1.32204 1.39607 0.83518 0.73956 0.76117 0.76460 1.21268 1.21013 1.21255 1.46109 1.08992 1.59977 1.18148 1.19414 0.88378 0.90610 0.90171 1.20149 0.92531 1.18487 1.03239 1.19416 0.87114 0.97824 0.84879 1.86227 1.23103 1.69431 1.41698 1.23512 0.91870 0.94441 0.98259 1.48223 1.13561 1.50052 1.09487 1.22112 0.93406 0.95682 0.93565 1.77582 0.92154 1.30298 1.21757 0.94945 0.92317 0.93327 0.92456 0.93445 0.91055 0.77549 0.83341 0.92377 0.88141 0.92136 0.92036 0.89473 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.31 37.16 0.31 -2.59 16 2 C -0.12 -2.62 5.58 -26.73 -0.15 -2.77 16 3 C 0.26 6.33 1.94 -69.08 -0.13 6.20 16 4 H 0.04 1.15 5.67 -51.93 -0.29 0.86 16 5 C -0.60 -16.14 8.50 -34.44 -0.29 -16.43 16 6 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.03 0.88 5.46 -17.82 -0.10 0.78 16 8 N -0.89 -26.24 13.62 55.43 0.76 -25.49 16 9 Si 1.07 24.39 29.91 -169.99 -5.08 19.31 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.69 -16.38 5.22 -54.72 -0.29 -16.67 16 14 C 0.37 8.50 6.89 -154.59 -1.07 7.43 16 15 C -0.31 -6.65 7.60 -39.63 -0.30 -6.95 16 16 C 0.27 5.17 7.78 -16.93 -0.13 5.04 16 17 O -0.30 -4.71 10.57 -18.95 -0.20 -4.91 16 18 C 0.01 0.14 9.39 101.05 0.95 1.09 16 19 N -0.42 -7.58 4.02 -68.29 -0.27 -7.85 16 20 C 0.09 1.13 9.59 59.85 0.57 1.70 16 21 N -0.38 -8.26 12.58 31.39 0.40 -7.86 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.19 5.35 -51.93 -0.28 0.92 16 24 H 0.05 0.91 6.59 -51.93 -0.34 0.57 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.28 8.32 6.66 -40.82 -0.27 8.05 16 28 H 0.39 9.24 8.72 -40.82 -0.36 8.88 16 29 H 0.15 3.18 5.49 -52.49 -0.29 2.89 16 30 H 0.06 0.52 6.62 -51.92 -0.34 0.18 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.52 5.81 -51.93 -0.30 0.22 16 33 H 0.06 0.62 7.63 -51.93 -0.40 0.22 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.76 4.64 -51.93 -0.24 0.51 16 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -31.59 279.97 -5.25 -36.83 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.43 Total: 8.91 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.34 Total: -6.50 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.59 Total: -57.87 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.20 Total: -4.91 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.59 -5.25 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300927102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.275 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds