Wall clock time and date at job start Mon Mar 30 2020 03:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47395 * 2 1 4 4 H 1.08998 * 109.47046 * 305.80979 * 3 2 1 5 5 C 1.50698 * 109.47490 * 185.80433 * 3 2 1 6 6 H 1.08004 * 119.99798 * 334.86758 * 5 3 2 7 7 C 1.37875 * 120.00269 * 154.87070 * 5 3 2 8 8 N 1.31516 * 119.99939 * 355.66492 * 7 5 3 9 9 Si 1.86799 * 119.99984 * 175.38590 * 7 5 3 10 10 H 1.48507 * 109.47087 * 90.00155 * 9 7 5 11 11 H 1.48497 * 109.47120 * 209.99753 * 9 7 5 12 12 H 1.48500 * 109.47374 * 330.00215 * 9 7 5 13 13 N 1.46504 * 109.46653 * 65.80581 * 3 2 1 14 14 C 1.39963 * 119.99617 * 274.99796 * 13 3 2 15 15 C 1.40353 * 125.93831 * 0.02562 * 14 13 3 16 16 C 1.35871 * 107.78944 * 179.97438 * 15 14 13 17 17 O 1.35747 * 126.13741 * 180.02562 * 16 15 14 18 18 C 1.42903 * 116.99857 * 184.29241 * 17 16 15 19 19 N 1.35161 * 107.72571 * 0.02562 * 16 15 14 20 20 C 1.46504 * 125.97171 * 180.02562 * 19 16 15 21 21 N 1.31237 * 125.92966 * 179.69421 * 14 13 3 22 22 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47113 * 300.00021 * 1 2 3 24 24 H 1.09001 * 109.47414 * 59.99298 * 1 2 3 25 25 H 1.09005 * 109.47204 * 240.00524 * 2 1 3 26 26 H 1.08994 * 109.47611 * 120.00350 * 2 1 3 27 27 H 0.97006 * 120.00053 * 5.00470 * 8 7 5 28 28 H 0.96993 * 120.00291 * 95.00347 * 13 3 2 29 29 H 1.08002 * 126.10925 * 359.97233 * 15 14 13 30 30 H 1.09008 * 109.46992 * 66.21249 * 18 17 16 31 31 H 1.08995 * 109.46792 * 186.21335 * 18 17 16 32 32 H 1.08997 * 109.47289 * 306.21361 * 18 17 16 33 33 H 1.09002 * 109.47244 * 82.31477 * 20 19 16 34 34 H 1.09004 * 109.46973 * 202.31255 * 20 19 16 35 35 H 1.08997 * 109.47157 * 322.31067 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9855 -0.8334 5 6 3.5401 1.4450 -0.1437 6 1 4.1142 0.5861 0.1715 7 6 4.1798 2.5435 -0.6774 8 7 3.4762 3.5540 -1.1396 9 14 6.0460 2.6002 -0.7370 10 1 6.5184 2.0139 -2.0170 11 1 6.5018 4.0101 -0.6404 12 1 6.6014 1.8214 0.3989 13 7 1.6691 2.0915 1.2600 14 6 0.4067 2.6797 1.3990 15 6 -0.5960 2.7197 0.4176 16 6 -1.6641 3.3758 0.9420 17 8 -2.8395 3.6249 0.3103 18 6 -3.7994 4.4155 1.0143 19 7 -1.3462 3.7358 2.2054 20 6 -2.2116 4.4646 3.1361 21 7 -0.0474 3.2841 2.4717 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.5113 3.5592 -1.0395 28 1 2.2983 2.1137 1.9977 29 1 -0.5303 2.3035 -0.5768 30 1 -3.4154 5.4281 1.1383 31 1 -4.7301 4.4467 0.4478 32 1 -3.9850 3.9748 1.9938 33 1 -2.8973 3.7669 3.6168 34 1 -1.5997 4.9533 3.8944 35 1 -2.7816 5.2160 2.5896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300927102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:11 Heat of formation + Delta-G solvation = 33.640459 kcal Electronic energy + Delta-G solvation = -17642.319188 eV Core-core repulsion = 14870.442257 eV Total energy + Delta-G solvation = -2771.876931 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.34939 -39.40521 -37.87607 -34.71630 -33.72039 -32.50737 -30.34857 -28.85058 -27.82577 -26.32165 -24.83228 -22.87062 -21.81830 -20.94453 -19.20294 -18.63207 -17.51776 -16.80373 -16.44268 -16.16273 -15.68668 -15.48844 -15.21538 -15.03240 -14.74965 -14.37275 -14.10726 -13.88200 -13.71007 -12.77735 -12.64953 -12.55641 -12.34691 -12.14264 -11.94606 -11.86556 -11.53170 -11.21035 -10.90797 -10.53027 -10.40726 -9.19724 -8.64659 -8.27429 -6.44650 1.04530 1.49057 1.57159 1.65521 1.82641 2.06613 2.20081 2.56650 2.82519 3.39755 3.79308 4.08807 4.21120 4.31286 4.34529 4.42259 4.44642 4.54178 4.57428 4.69577 4.71271 4.84916 4.92955 5.12533 5.19770 5.25928 5.41662 5.54368 5.60146 5.92889 6.19020 6.49401 6.54974 6.60037 7.09361 7.40225 7.44545 8.72679 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032259 B = 0.006637 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.761295 B = 4217.750248 C = 4510.580242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.265 3.735 4 H 0.014 0.986 5 C -0.613 4.613 6 H 0.056 0.944 7 C -0.016 4.016 8 N -0.920 5.920 9 Si 1.119 2.881 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.701 5.701 14 C 0.358 3.642 15 C -0.348 4.348 16 C 0.294 3.706 17 O -0.308 6.308 18 C -0.002 4.002 19 N -0.410 5.410 20 C 0.078 3.922 21 N -0.400 5.400 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.261 0.739 28 H 0.386 0.614 29 H 0.136 0.864 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.623 0.911 5.789 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.163 3.837 4 H 0.032 0.968 5 C -0.651 4.651 6 H 0.074 0.926 7 C -0.218 4.218 8 N -0.555 5.555 9 Si 0.941 3.059 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.340 5.340 14 C 0.100 3.900 15 C -0.380 4.380 16 C 0.125 3.875 17 O -0.214 6.214 18 C -0.096 4.096 19 N -0.206 5.206 20 C -0.061 4.061 21 N -0.240 5.240 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.220 0.780 29 H 0.154 0.846 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.413 2.096 6.026 13.956 hybrid contribution -1.323 -0.869 0.086 1.585 sum -13.735 1.227 6.113 15.084 Atomic orbital electron populations 1.21929 0.95782 1.00719 1.01036 1.21821 0.95512 0.97750 1.00523 1.18619 0.93898 0.89252 0.81928 0.96834 1.22425 0.92539 1.04091 1.46073 0.92594 1.27348 1.10932 0.92024 0.91478 1.70842 1.08857 1.33625 1.42215 0.82917 0.69243 0.76070 0.77710 1.19664 1.21558 1.19341 1.45591 1.09843 1.61093 1.17474 1.19422 0.88147 0.91293 0.91118 1.20071 0.93807 1.21127 1.02999 1.19269 0.87566 0.95904 0.84808 1.86258 1.22539 1.70186 1.42444 1.24012 0.91540 0.94406 0.99621 1.48574 1.12704 1.49198 1.10090 1.22684 0.93306 0.96759 0.93381 1.77439 0.94313 1.30360 1.21851 0.92345 0.93496 0.93568 0.92371 0.93290 0.92817 0.78022 0.84600 0.91023 0.84955 0.90225 0.89278 0.89035 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.31 71.98 0.60 -4.67 16 2 C -0.12 -5.05 5.58 30.59 0.17 -4.88 16 3 C 0.26 13.41 1.94 44.24 0.09 13.50 16 4 H 0.01 0.78 5.67 -2.39 -0.01 0.76 16 5 C -0.61 -33.42 8.50 25.60 0.22 -33.20 16 6 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 7 C -0.02 -0.88 5.46 84.65 0.46 -0.41 16 8 N -0.92 -56.09 13.62 21.45 0.29 -55.79 16 9 Si 1.12 49.36 29.91 68.60 2.05 51.41 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 13 N -0.70 -34.31 5.22 -327.04 -1.71 -36.01 16 14 C 0.36 16.69 6.89 133.37 0.92 17.61 16 15 C -0.35 -15.16 7.60 22.24 0.17 -14.99 16 16 C 0.29 10.78 7.78 83.63 0.65 11.43 16 17 O -0.31 -9.06 10.57 -90.72 -0.96 -10.02 16 18 C 0.00 -0.04 9.39 113.37 1.06 1.03 16 19 N -0.41 -14.17 4.02 -481.29 -1.93 -16.10 16 20 C 0.08 1.60 9.59 127.77 1.23 2.83 16 21 N -0.40 -17.43 12.58 -54.60 -0.69 -18.11 16 22 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 1.91 5.35 -2.38 -0.01 1.90 16 24 H 0.05 1.76 6.59 -2.39 -0.02 1.75 16 25 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.26 16.46 6.66 -92.70 -0.62 15.84 16 28 H 0.39 18.97 8.72 -92.71 -0.81 18.16 16 29 H 0.14 6.12 5.49 -2.91 -0.02 6.10 16 30 H 0.07 0.98 6.62 -2.38 -0.02 0.96 16 31 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.00 5.81 -2.39 -0.01 0.99 16 33 H 0.09 1.41 7.63 -2.39 -0.02 1.39 16 34 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.12 1.62 4.64 -2.39 -0.01 1.61 16 Total: -1.00 -70.55 279.97 3.08 -67.47 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.46 Total: 28.93 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.56 Total: -11.77 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -4.03 Total: -126.02 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.96 Total: -10.02 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.05 Total: 51.41 kcal Total: -70.55 3.08 -67.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300927102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.109 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds