Wall clock time and date at job start Mon Mar 30 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30272 * 126.27796 * 89.68945 * 3 2 1 5 5 N 1.28669 * 109.37745 * 179.82778 * 4 3 2 6 6 C 1.30271 * 109.38030 * 0.44968 * 5 4 3 7 7 C 1.50703 * 126.28279 * 179.73278 * 6 5 4 8 8 H 1.08999 * 109.47178 * 194.99475 * 7 6 5 9 9 C 1.53005 * 109.46935 * 74.99178 * 7 6 5 10 10 N 1.46902 * 109.46879 * 314.99683 * 7 6 5 11 11 C 1.46896 * 110.99718 * 204.99884 * 10 7 6 12 12 C 1.53005 * 109.47188 * 179.97438 * 11 10 7 13 13 C 1.50702 * 109.47044 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00085 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99729 * 180.02562 * 13 12 11 16 16 N 1.31523 * 120.00201 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00039 * 180.02562 * 15 13 12 18 18 H 1.48489 * 109.47285 * 59.99901 * 17 15 13 19 19 H 1.48502 * 109.47224 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46802 * 299.99960 * 17 15 13 21 21 O 1.34358 * 126.28205 * 270.00538 * 3 2 1 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 26 26 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 27 27 H 1.09000 * 109.46787 * 60.00792 * 9 7 6 28 28 H 1.09001 * 109.46525 * 179.97438 * 9 7 6 29 29 H 1.08999 * 109.47429 * 300.00143 * 9 7 6 30 30 H 1.00891 * 110.99986 * 328.95100 * 10 7 6 31 31 H 1.08998 * 109.47518 * 300.00145 * 11 10 7 32 32 H 1.09001 * 109.47445 * 59.99808 * 11 10 7 33 33 H 1.08991 * 109.46969 * 300.00272 * 12 11 10 34 34 H 1.08997 * 109.46599 * 60.00108 * 12 11 10 35 35 H 0.97000 * 119.99949 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2839 2.1495 1.0502 5 7 2.6997 3.3083 0.6762 6 6 2.7184 3.3615 -0.6253 7 6 3.1358 4.5422 -1.4637 8 1 2.8016 4.3949 -2.4907 9 6 4.6600 4.6731 -1.4372 10 7 2.5297 5.7659 -0.9222 11 6 2.3966 6.7929 -1.9641 12 6 1.7625 8.0493 -1.3637 13 6 1.6254 9.1026 -2.4328 14 1 1.9576 8.8967 -3.4395 15 6 1.0767 10.3295 -2.1252 16 7 0.6725 10.5805 -0.8991 17 14 0.9060 11.6350 -3.4504 18 1 0.0436 11.1203 -4.5441 19 1 0.2919 12.8549 -2.8674 20 1 2.2477 11.9678 -3.9930 21 8 2.2973 2.1705 -1.0831 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.1097 3.7651 -1.8390 28 1 4.9619 5.5268 -2.0439 29 1 4.9942 4.8204 -0.4102 30 1 1.6382 5.5685 -0.4931 31 1 3.3817 7.0371 -2.3616 32 1 1.7640 6.4156 -2.7676 33 1 0.7774 7.8048 -0.9666 34 1 2.3948 8.4268 -0.5602 35 1 0.2869 11.4438 -0.6826 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309053890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:57 Heat of formation + Delta-G solvation = 22.021941 kcal Electronic energy + Delta-G solvation = -16540.793801 eV Core-core repulsion = 13768.413053 eV Total energy + Delta-G solvation = -2772.380748 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.24361 -37.10467 -36.15699 -34.64213 -33.34838 -31.49474 -29.41470 -28.16731 -25.28155 -24.56105 -23.74988 -22.00157 -21.04815 -20.55939 -17.40487 -17.21735 -16.41092 -15.96605 -15.50167 -14.90105 -14.48284 -14.28231 -13.92958 -13.27141 -12.88508 -12.55583 -12.37488 -12.28257 -12.26508 -11.94262 -11.77268 -11.72165 -11.48837 -11.12055 -10.95470 -10.80641 -10.59185 -10.05026 -9.64781 -9.38177 -9.18932 -8.37375 -8.06050 -6.00726 -4.04304 1.09898 2.12810 2.39816 3.32733 3.37491 3.39285 3.67358 4.23156 4.35154 4.48636 4.68760 4.75995 4.92165 4.97979 5.16592 5.27798 5.34153 5.35022 5.47215 5.53900 5.59261 5.76340 5.77568 5.89989 6.18236 6.22630 6.33158 6.88179 7.26378 7.61446 7.70109 7.84821 8.04010 8.33599 8.38893 9.02507 9.59583 11.10532 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040576 B = 0.004079 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.903682 B = 6862.634598 C = 7101.127104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.024 4.024 3 C 0.152 3.848 4 N -0.287 5.287 5 N -0.262 5.262 6 C 0.164 3.836 7 C 0.182 3.818 8 H 0.070 0.930 9 C -0.136 4.136 10 N -0.670 5.670 11 C 0.065 3.935 12 C 0.026 3.974 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.228 6.228 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.344 0.656 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.014 0.986 34 H 0.029 0.971 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 -20.738 -1.436 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.062 4.062 3 C -0.059 4.059 4 N -0.134 5.134 5 N -0.108 5.108 6 C -0.048 4.048 7 C 0.071 3.929 8 H 0.088 0.912 9 C -0.194 4.194 10 N -0.304 5.304 11 C -0.063 4.063 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 O -0.106 6.106 22 H 0.095 0.905 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.163 0.837 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.280 -19.992 0.149 20.260 hybrid contribution -1.043 0.085 -2.384 2.603 sum 2.237 -19.907 -2.235 20.157 Atomic orbital electron populations 1.21812 0.92663 1.03249 1.03338 1.20122 0.97148 0.83438 1.05517 1.28051 0.99899 0.98044 0.79948 1.74448 1.14731 0.98597 1.25664 1.74484 1.15478 1.11752 1.09074 1.28346 0.97644 0.86756 0.92018 1.20061 0.97328 0.82130 0.93430 0.91221 1.21826 0.91406 1.01982 1.04179 1.60807 1.30877 1.05939 1.32798 1.22350 1.00264 0.92454 0.91217 1.19066 0.95706 0.89737 0.96650 1.21098 1.41042 0.98363 0.95826 0.92720 1.25004 0.95452 0.98436 0.95410 1.69969 1.41417 1.23254 1.18392 0.86632 0.78366 0.81004 0.81825 1.20308 1.21253 1.20180 1.84778 1.63876 1.23505 1.38484 0.90535 0.91456 0.92006 0.88639 0.87195 0.92682 0.90244 0.90709 0.83700 0.91562 0.96187 0.96718 0.95266 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.02 -0.17 6.56 -27.88 -0.18 -0.36 16 3 C 0.15 1.92 7.73 -12.94 -0.10 1.82 16 4 N -0.29 -4.55 12.22 32.55 0.40 -4.16 16 5 N -0.26 -4.56 12.22 32.55 0.40 -4.17 16 6 C 0.16 2.55 6.97 -12.94 -0.09 2.46 16 7 C 0.18 2.72 3.16 -68.86 -0.22 2.50 16 8 H 0.07 0.95 7.80 -51.93 -0.40 0.55 16 9 C -0.14 -1.79 9.40 37.16 0.35 -1.44 16 10 N -0.67 -12.16 6.30 -107.95 -0.68 -12.84 16 11 C 0.06 1.31 5.42 -3.82 -0.02 1.29 16 12 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 13 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 O -0.23 -3.18 10.87 5.40 0.06 -3.12 16 22 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.02 7.45 -51.93 -0.39 0.63 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.34 6.43 8.35 -39.30 -0.33 6.10 16 31 H 0.07 1.30 7.44 -51.93 -0.39 0.92 16 32 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -32.22 303.12 -5.26 -37.49 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.27 Total: -0.81 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.45 Total: -7.30 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.85 Total: -47.34 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: 0.06 Total: -3.12 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.22 -5.26 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.511 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds