Wall clock time and date at job start Mon Mar 30 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30272 * 126.27796 * 89.68945 * 3 2 1 5 5 N 1.28669 * 109.37745 * 179.82778 * 4 3 2 6 6 C 1.30271 * 109.38030 * 0.44968 * 5 4 3 7 7 C 1.50703 * 126.28279 * 179.73278 * 6 5 4 8 8 H 1.08999 * 109.47178 * 194.99475 * 7 6 5 9 9 C 1.53005 * 109.46935 * 74.99178 * 7 6 5 10 10 N 1.46902 * 109.46879 * 314.99683 * 7 6 5 11 11 C 1.46896 * 110.99718 * 204.99884 * 10 7 6 12 12 C 1.53005 * 109.47188 * 179.97438 * 11 10 7 13 13 C 1.50702 * 109.47044 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00085 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99729 * 180.02562 * 13 12 11 16 16 N 1.31523 * 120.00201 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00039 * 180.02562 * 15 13 12 18 18 H 1.48489 * 109.47285 * 59.99901 * 17 15 13 19 19 H 1.48502 * 109.47224 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46802 * 299.99960 * 17 15 13 21 21 O 1.34358 * 126.28205 * 270.00538 * 3 2 1 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 26 26 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 27 27 H 1.09000 * 109.46787 * 60.00792 * 9 7 6 28 28 H 1.09001 * 109.46525 * 179.97438 * 9 7 6 29 29 H 1.08999 * 109.47429 * 300.00143 * 9 7 6 30 30 H 1.00891 * 110.99986 * 328.95100 * 10 7 6 31 31 H 1.08998 * 109.47518 * 300.00145 * 11 10 7 32 32 H 1.09001 * 109.47445 * 59.99808 * 11 10 7 33 33 H 1.08991 * 109.46969 * 300.00272 * 12 11 10 34 34 H 1.08997 * 109.46599 * 60.00108 * 12 11 10 35 35 H 0.97000 * 119.99949 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2839 2.1495 1.0502 5 7 2.6997 3.3083 0.6762 6 6 2.7184 3.3615 -0.6253 7 6 3.1358 4.5422 -1.4637 8 1 2.8016 4.3949 -2.4907 9 6 4.6600 4.6731 -1.4372 10 7 2.5297 5.7659 -0.9222 11 6 2.3966 6.7929 -1.9641 12 6 1.7625 8.0493 -1.3637 13 6 1.6254 9.1026 -2.4328 14 1 1.9576 8.8967 -3.4395 15 6 1.0767 10.3295 -2.1252 16 7 0.6725 10.5805 -0.8991 17 14 0.9060 11.6350 -3.4504 18 1 0.0436 11.1203 -4.5441 19 1 0.2919 12.8549 -2.8674 20 1 2.2477 11.9678 -3.9930 21 8 2.2973 2.1705 -1.0831 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.1097 3.7651 -1.8390 28 1 4.9619 5.5268 -2.0439 29 1 4.9942 4.8204 -0.4102 30 1 1.6382 5.5685 -0.4931 31 1 3.3817 7.0371 -2.3616 32 1 1.7640 6.4156 -2.7676 33 1 0.7774 7.8048 -0.9666 34 1 2.3948 8.4268 -0.5602 35 1 0.2869 11.4438 -0.6826 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309053890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:57 Heat of formation + Delta-G solvation = -4.535399 kcal Electronic energy + Delta-G solvation = -16541.945414 eV Core-core repulsion = 13768.413053 eV Total energy + Delta-G solvation = -2773.532360 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.36109 -38.48466 -37.29540 -35.67195 -35.06267 -33.11306 -30.60916 -29.76219 -26.58772 -25.66910 -25.27862 -22.93108 -22.58394 -22.02623 -18.56898 -18.47662 -18.31958 -17.34550 -16.52350 -16.37275 -15.94033 -15.44890 -15.07225 -14.59231 -14.17310 -14.07066 -13.68590 -13.47873 -13.14376 -13.05241 -12.96621 -12.91228 -12.81260 -12.65192 -12.44144 -12.27086 -11.97549 -11.78311 -11.45951 -11.32347 -10.63795 -10.55431 -9.51379 -8.19082 -6.31264 0.02440 1.07581 1.25638 1.42201 1.45555 1.53410 2.41551 2.68861 3.02176 3.14752 3.42608 3.75322 3.96911 4.08235 4.11679 4.22010 4.29895 4.39059 4.48248 4.53534 4.74853 4.75960 4.83646 4.89580 4.97764 5.02840 5.24910 5.25772 5.43983 5.63119 5.74669 6.01598 6.12444 6.29776 6.86262 7.20624 7.38410 8.93061 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040576 B = 0.004079 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.903682 B = 6862.634598 C = 7101.127104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 C 0.170 3.830 4 N -0.326 5.326 5 N -0.297 5.297 6 C 0.160 3.840 7 C 0.184 3.816 8 H 0.091 0.909 9 C -0.131 4.131 10 N -0.681 5.681 11 C 0.084 3.916 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.067 0.933 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.264 1.264 21 O -0.227 6.227 22 H 0.107 0.893 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.338 0.662 31 H 0.077 0.923 32 H 0.031 0.969 33 H -0.013 1.013 34 H -0.005 1.005 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -22.275 -3.503 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 C -0.041 4.041 4 N -0.172 5.172 5 N -0.143 5.143 6 C -0.053 4.053 7 C 0.073 3.927 8 H 0.108 0.892 9 C -0.189 4.189 10 N -0.314 5.314 11 C -0.044 4.044 12 C -0.007 4.007 13 C -0.582 4.582 14 H 0.085 0.915 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.189 1.189 21 O -0.106 6.106 22 H 0.126 0.874 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.143 0.857 26 H 0.146 0.854 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.005 0.995 34 H 0.014 0.986 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.605 -21.553 -1.912 21.936 hybrid contribution -1.170 0.434 -1.689 2.100 sum 2.434 -21.119 -3.601 21.562 Atomic orbital electron populations 1.21821 0.91996 1.04886 1.02092 1.20563 0.97453 0.80328 1.07873 1.29180 0.96976 0.99106 0.78845 1.74383 1.16879 0.98781 1.27131 1.74410 1.16609 1.12978 1.10261 1.28291 0.97908 0.87446 0.91610 1.20141 0.98045 0.80546 0.93976 0.89178 1.21813 0.90109 1.03517 1.03454 1.60694 1.30658 1.07518 1.32542 1.21967 1.00333 0.90773 0.91293 1.18921 0.93999 0.92221 0.95594 1.21578 1.40756 0.99090 0.96734 0.91463 1.26017 0.94961 1.01138 0.97812 1.70125 1.42457 1.23981 1.20824 0.85444 0.78906 0.77603 0.78738 1.19021 1.21155 1.18919 1.84794 1.63914 1.23115 1.38788 0.87444 0.93141 0.92823 0.85686 0.85354 0.90063 0.89771 0.92351 0.84436 0.90446 0.95132 0.99492 0.98629 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.89 71.98 0.71 -0.94 16 2 C -0.02 -0.28 6.56 29.85 0.20 -0.09 16 3 C 0.17 4.07 7.73 88.34 0.68 4.76 16 4 N -0.33 -10.31 12.22 -165.50 -2.02 -12.33 16 5 N -0.30 -10.47 12.22 -165.50 -2.02 -12.50 16 6 C 0.16 4.88 6.97 88.34 0.62 5.50 16 7 C 0.18 5.28 3.16 44.17 0.14 5.42 16 8 H 0.09 2.26 7.80 -2.39 -0.02 2.24 16 9 C -0.13 -3.25 9.40 71.98 0.68 -2.58 16 10 N -0.68 -24.84 6.30 -495.43 -3.12 -27.96 16 11 C 0.08 3.40 5.42 86.31 0.47 3.86 16 12 C 0.03 1.61 5.23 29.85 0.16 1.76 16 13 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 16 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 17 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 O -0.23 -6.00 10.87 -3.60 -0.04 -6.04 16 22 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 2.01 7.45 -2.39 -0.02 1.99 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.34 12.99 8.35 -89.70 -0.75 12.24 16 31 H 0.08 2.95 7.44 -2.39 -0.02 2.93 16 32 H 0.03 1.17 8.06 -2.39 -0.02 1.15 16 33 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -71.36 303.12 -0.22 -71.58 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.33 Total: 10.92 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.34 Total: -12.29 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -6.88 Total: -110.17 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.04 Total: -6.04 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.36 -0.22 -71.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309053890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.048 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds