Wall clock time and date at job start Mon Mar 30 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47296 * 2 1 4 4 N 1.46900 * 109.47153 * 119.99497 * 2 1 3 5 5 C 1.46901 * 111.00291 * 275.00362 * 4 2 1 6 6 C 1.52994 * 109.47470 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47368 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47473 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99625 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00118 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99861 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99601 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47716 * 0.02562 * 12 10 8 14 14 H 1.48509 * 109.46921 * 120.00492 * 12 10 8 15 15 H 1.48498 * 109.47253 * 239.99841 * 12 10 8 16 16 C 1.50699 * 109.47305 * 239.99104 * 2 1 3 17 17 N 1.31070 * 126.66563 * 285.04629 * 16 2 1 18 18 N 1.28841 * 107.99126 * 179.97438 * 17 16 2 19 19 N 1.28737 * 109.39601 * 359.73596 * 18 17 16 20 20 N 1.29014 * 108.81027 * 0.43746 * 19 18 17 21 21 C 1.46506 * 126.43954 * 179.83675 * 20 19 18 22 22 H 1.08998 * 109.47272 * 300.00267 * 1 2 3 23 23 H 1.08999 * 109.47224 * 60.00579 * 1 2 3 24 24 H 1.09009 * 109.47432 * 180.02562 * 1 2 3 25 25 H 1.00902 * 111.00195 * 151.04168 * 4 2 1 26 26 H 1.09005 * 109.46633 * 299.99787 * 5 4 2 27 27 H 1.09001 * 109.47184 * 59.99645 * 5 4 2 28 28 H 1.09000 * 109.47458 * 299.99697 * 6 5 4 29 29 H 1.09001 * 109.47222 * 59.99649 * 6 5 4 30 30 H 1.09005 * 109.47003 * 299.99932 * 7 6 5 31 31 H 1.09001 * 109.46917 * 59.99853 * 7 6 5 32 32 H 0.97001 * 119.99469 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.47060 * 269.68940 * 21 20 19 34 34 H 1.09004 * 109.47073 * 29.68429 * 21 20 19 35 35 H 1.09000 * 109.47212 * 149.68512 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5326 3.5742 7 6 2.6621 0.4207 4.7691 8 6 3.1676 -0.3234 5.9782 9 1 3.4165 -1.3716 5.9021 10 6 3.3112 0.3336 7.1818 11 7 3.0067 1.6096 7.2748 12 14 3.9371 -0.5890 8.6806 13 1 4.2059 -2.0029 8.3150 14 1 5.1908 0.0438 9.1636 15 1 2.9129 -0.5411 9.7547 16 6 2.0323 -0.7106 -1.2303 17 7 2.0359 -2.0043 -1.4403 18 7 2.5433 -2.2170 -2.6054 19 7 2.8583 -1.0921 -3.1463 20 7 2.5640 -0.1397 -2.3272 21 6 2.7649 1.2941 -2.5515 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 2.9173 -1.1205 1.0288 26 1 2.7588 1.0463 2.1182 27 1 1.0870 0.6165 2.5525 28 1 1.9202 -1.3564 3.8032 29 1 3.5916 -0.9260 3.3684 30 1 3.3384 1.2443 4.5400 31 1 1.6668 0.8144 4.9751 32 1 3.1075 2.0717 8.1217 33 1 3.7506 1.5841 -2.1876 34 1 2.6937 1.5085 -3.6178 35 1 1.9999 1.8562 -2.0159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309117808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:21 Heat of formation + Delta-G solvation = 104.545947 kcal Electronic energy + Delta-G solvation = -16572.539179 eV Core-core repulsion = 13836.029692 eV Total energy + Delta-G solvation = -2736.509487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.35018 -37.52993 -35.86455 -34.25789 -32.66790 -31.28549 -29.48524 -28.69002 -26.23080 -24.60389 -23.48170 -22.37266 -20.98655 -20.21312 -17.74384 -17.46312 -16.50233 -16.18699 -15.36421 -14.70918 -14.38106 -14.15411 -13.99026 -13.58125 -13.32686 -12.73238 -12.39356 -12.28638 -12.14216 -11.98759 -11.61905 -11.39747 -11.12984 -11.08350 -10.86978 -10.63232 -10.52981 -10.23111 -9.75177 -9.38806 -9.07886 -8.43787 -8.36255 -6.01791 -4.03527 1.00115 1.71853 2.10650 3.30925 3.38594 3.43574 3.62995 3.78912 4.13906 4.45088 4.46069 4.53559 4.76702 4.91357 4.98075 5.20984 5.34628 5.46093 5.52553 5.63129 5.64134 5.74035 5.88828 6.08619 6.22611 6.62465 6.65316 7.06112 7.13097 7.37356 7.65646 7.78898 7.98399 8.41826 8.46096 9.03812 9.60922 11.09704 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045851 B = 0.003852 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.520660 B = 7267.252758 C = 7426.815161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.170 3.830 3 H 0.066 0.934 4 N -0.671 5.671 5 C 0.058 3.942 6 C -0.108 4.108 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.182 3.818 17 N -0.278 5.278 18 N -0.078 5.078 19 N -0.100 5.100 20 N -0.310 5.310 21 C 0.076 3.924 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.345 0.655 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.013 0.987 31 H 0.017 0.983 32 H 0.259 0.741 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 3.097 -18.649 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.057 3.943 3 H 0.083 0.917 4 N -0.304 5.304 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.075 0.925 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.097 4.097 17 N -0.127 5.127 18 N -0.072 5.072 19 N -0.086 5.086 20 N -0.112 5.112 21 C -0.065 4.065 22 H 0.096 0.904 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.164 0.836 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.098 1.823 -19.147 19.482 hybrid contribution 1.101 1.130 0.993 1.864 sum -1.997 2.953 -18.154 18.501 Atomic orbital electron populations 1.21830 0.91704 1.04090 1.02049 1.20056 0.97252 0.93964 0.83004 0.91658 1.60647 1.34284 1.33080 1.02364 1.22288 1.00951 0.93481 0.90233 1.21634 0.99530 0.99624 0.93774 1.19071 0.97165 0.94148 0.91142 1.21295 1.43388 0.96479 0.94503 0.92547 1.25021 0.95608 0.94886 0.98983 1.69971 1.49035 1.09029 1.25637 0.86540 0.78476 0.80120 0.82918 1.19671 1.21075 1.20986 1.26338 0.99484 0.90640 0.93239 1.75109 1.16703 1.11441 1.09399 1.78668 1.11531 1.15305 1.01712 1.78862 1.19305 0.92452 1.17966 1.48480 1.40465 1.10412 1.11888 1.22434 1.05187 0.72781 1.06134 0.90409 0.92775 0.90546 0.83558 0.95505 0.90799 0.92131 0.93547 0.96842 0.96466 0.93098 0.88282 0.87343 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.40 37.16 0.35 -1.01 16 2 C 0.17 1.83 2.91 -68.87 -0.20 1.63 16 3 H 0.07 0.55 6.85 -51.93 -0.36 0.20 16 4 N -0.67 -9.21 6.30 -107.95 -0.68 -9.89 16 5 C 0.06 0.90 5.48 -3.83 -0.02 0.88 16 6 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 9 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 C 0.18 2.18 6.62 -155.43 -1.03 1.15 16 17 N -0.28 -4.22 12.36 32.70 0.40 -3.81 16 18 N -0.08 -1.21 13.43 60.35 0.81 -0.40 16 19 N -0.10 -1.31 13.29 60.35 0.80 -0.51 16 20 N -0.31 -3.15 3.75 -65.02 -0.24 -3.39 16 21 C 0.08 0.34 11.04 59.85 0.66 1.00 16 22 H 0.08 0.76 7.45 -51.93 -0.39 0.37 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.35 4.89 8.35 -39.29 -0.33 4.56 16 26 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 27 H 0.07 1.12 7.44 -51.93 -0.39 0.73 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.11 0.25 7.41 -51.93 -0.38 -0.14 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -33.24 300.41 -4.78 -38.02 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.18 Total: -3.62 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.93 Total: -11.60 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 1.83 Total: -43.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.24 -4.78 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309117808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.570 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds