Wall clock time and date at job start Mon Mar 30 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47296 * 2 1 4 4 N 1.46900 * 109.47153 * 119.99497 * 2 1 3 5 5 C 1.46901 * 111.00291 * 275.00362 * 4 2 1 6 6 C 1.52994 * 109.47470 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47368 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47473 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99625 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00118 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99861 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99601 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47716 * 0.02562 * 12 10 8 14 14 H 1.48509 * 109.46921 * 120.00492 * 12 10 8 15 15 H 1.48498 * 109.47253 * 239.99841 * 12 10 8 16 16 C 1.50699 * 109.47305 * 239.99104 * 2 1 3 17 17 N 1.31070 * 126.66563 * 285.04629 * 16 2 1 18 18 N 1.28841 * 107.99126 * 179.97438 * 17 16 2 19 19 N 1.28737 * 109.39601 * 359.73596 * 18 17 16 20 20 N 1.29014 * 108.81027 * 0.43746 * 19 18 17 21 21 C 1.46506 * 126.43954 * 179.83675 * 20 19 18 22 22 H 1.08998 * 109.47272 * 300.00267 * 1 2 3 23 23 H 1.08999 * 109.47224 * 60.00579 * 1 2 3 24 24 H 1.09009 * 109.47432 * 180.02562 * 1 2 3 25 25 H 1.00902 * 111.00195 * 151.04168 * 4 2 1 26 26 H 1.09005 * 109.46633 * 299.99787 * 5 4 2 27 27 H 1.09001 * 109.47184 * 59.99645 * 5 4 2 28 28 H 1.09000 * 109.47458 * 299.99697 * 6 5 4 29 29 H 1.09001 * 109.47222 * 59.99649 * 6 5 4 30 30 H 1.09005 * 109.47003 * 299.99932 * 7 6 5 31 31 H 1.09001 * 109.46917 * 59.99853 * 7 6 5 32 32 H 0.97001 * 119.99469 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.47060 * 269.68940 * 21 20 19 34 34 H 1.09004 * 109.47073 * 29.68429 * 21 20 19 35 35 H 1.09000 * 109.47212 * 149.68512 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5326 3.5742 7 6 2.6621 0.4207 4.7691 8 6 3.1676 -0.3234 5.9782 9 1 3.4165 -1.3716 5.9021 10 6 3.3112 0.3336 7.1818 11 7 3.0067 1.6096 7.2748 12 14 3.9371 -0.5890 8.6806 13 1 4.2059 -2.0029 8.3150 14 1 5.1908 0.0438 9.1636 15 1 2.9129 -0.5411 9.7547 16 6 2.0323 -0.7106 -1.2303 17 7 2.0359 -2.0043 -1.4403 18 7 2.5433 -2.2170 -2.6054 19 7 2.8583 -1.0921 -3.1463 20 7 2.5640 -0.1397 -2.3272 21 6 2.7649 1.2941 -2.5515 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 2.9173 -1.1205 1.0288 26 1 2.7588 1.0463 2.1182 27 1 1.0870 0.6165 2.5525 28 1 1.9202 -1.3564 3.8032 29 1 3.5916 -0.9260 3.3684 30 1 3.3384 1.2443 4.5400 31 1 1.6668 0.8144 4.9751 32 1 3.1075 2.0717 8.1217 33 1 3.7506 1.5841 -2.1876 34 1 2.6937 1.5085 -3.6178 35 1 1.9999 1.8562 -2.0159 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309117808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:21 Heat of formation + Delta-G solvation = 79.968977 kcal Electronic energy + Delta-G solvation = -16573.604916 eV Core-core repulsion = 13836.029692 eV Total energy + Delta-G solvation = -2737.575224 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.28113 -38.59642 -36.69953 -35.92209 -34.26366 -32.63580 -30.71468 -29.29155 -27.86112 -25.70914 -24.63464 -23.72437 -22.00846 -21.75650 -18.60162 -18.39343 -18.28975 -17.41521 -16.54657 -16.30263 -15.83386 -15.02144 -14.70071 -14.60691 -14.42871 -14.00211 -13.68790 -13.46511 -13.30009 -13.20299 -12.88688 -12.79506 -12.48979 -12.41625 -12.21290 -12.09469 -11.88564 -11.49486 -11.39118 -11.21835 -11.01078 -10.53005 -9.48624 -8.18899 -6.28422 0.11433 1.03306 1.09446 1.40602 1.41813 1.54638 2.42337 2.79058 2.88851 3.14823 3.41399 3.79579 4.06554 4.18359 4.23733 4.27943 4.28836 4.41718 4.53860 4.69606 4.73790 4.76383 4.88111 4.99796 5.12808 5.17294 5.25533 5.33911 5.55531 5.79290 5.89398 5.96323 6.24320 6.30597 6.88576 7.40650 7.49317 8.92856 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045851 B = 0.003852 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.520660 B = 7267.252758 C = 7426.815161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.173 3.827 3 H 0.101 0.899 4 N -0.681 5.681 5 C 0.074 3.926 6 C -0.096 4.096 7 C 0.026 3.974 8 C -0.543 4.543 9 H 0.055 0.945 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.960 3.040 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.183 3.817 17 N -0.313 5.313 18 N -0.114 5.114 19 N -0.105 5.105 20 N -0.294 5.294 21 C 0.058 3.942 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.342 0.658 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.044 0.956 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.263 0.737 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 4.069 -19.114 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.118 0.882 4 N -0.314 5.314 5 C -0.054 4.054 6 C -0.134 4.134 7 C -0.011 4.011 8 C -0.581 4.581 9 H 0.073 0.927 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.785 3.215 13 H -0.190 1.190 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.096 4.096 17 N -0.163 5.163 18 N -0.108 5.108 19 N -0.091 5.091 20 N -0.097 5.097 21 C -0.081 4.081 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.161 0.839 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.980 2.809 -19.634 20.057 hybrid contribution 1.066 0.921 1.091 1.782 sum -1.914 3.731 -18.543 19.012 Atomic orbital electron populations 1.21832 0.91002 1.03147 1.03487 1.20200 0.97639 0.95007 0.81060 0.88183 1.60535 1.34261 1.33331 1.03277 1.21973 1.01176 0.93165 0.89101 1.21385 0.99557 0.98481 0.93969 1.18965 0.95224 0.94374 0.92572 1.21744 1.43602 0.96751 0.96020 0.92708 1.25896 0.95732 0.95762 1.02167 1.70077 1.49920 1.10490 1.26641 0.85472 0.78056 0.78976 0.78994 1.19001 1.20326 1.20320 1.26398 0.99286 0.89981 0.93917 1.75009 1.17823 1.13638 1.09786 1.78637 1.13206 1.16594 1.02325 1.78758 1.19168 0.92702 1.18504 1.48838 1.38471 1.11808 1.10617 1.23057 1.07198 0.69651 1.08162 0.90080 0.90201 0.92720 0.83898 0.94319 0.90278 0.93118 0.93681 0.98562 0.98423 0.92780 0.86577 0.85501 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.40 71.98 0.68 -1.70 16 2 C 0.17 3.28 2.91 44.17 0.13 3.41 16 3 H 0.10 1.26 6.85 -2.39 -0.02 1.24 16 4 N -0.68 -17.65 6.30 -495.46 -3.12 -20.78 16 5 C 0.07 2.18 5.48 86.30 0.47 2.65 16 6 C -0.10 -3.78 5.41 30.59 0.17 -3.62 16 7 C 0.03 1.33 4.97 29.85 0.15 1.48 16 8 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 9 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 10 C 0.00 0.13 5.46 84.65 0.46 0.59 16 11 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 12 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 C 0.18 4.08 6.62 138.13 0.91 4.99 16 17 N -0.31 -9.43 12.36 -50.45 -0.62 -10.05 16 18 N -0.11 -3.53 13.43 37.01 0.50 -3.03 16 19 N -0.10 -2.64 13.29 37.02 0.49 -2.15 16 20 N -0.29 -5.30 3.75 -359.62 -1.35 -6.65 16 21 C 0.06 0.30 11.04 127.77 1.41 1.71 16 22 H 0.08 1.38 7.45 -2.39 -0.02 1.36 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.34 9.32 8.35 -89.69 -0.75 8.57 16 26 H 0.04 1.05 8.06 -2.38 -0.02 1.03 16 27 H 0.08 2.26 7.44 -2.39 -0.02 2.24 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 35 H 0.13 -0.02 7.41 -2.39 -0.02 -0.03 16 Total: -1.00 -72.99 300.41 3.15 -69.84 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.33 Total: 2.91 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 4.61 Total: -21.00 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -3.82 Total: -97.91 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.99 3.15 -69.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309117808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.807 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds