Wall clock time and date at job start Mon Mar 30 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46910 * 110.99951 * 2 1 4 4 C 1.53002 * 109.46714 * 66.04812 * 3 2 1 5 5 O 1.42894 * 109.47249 * 65.00038 * 4 3 2 6 6 C 1.42900 * 114.00090 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47213 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00045 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00086 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99735 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46949 * 89.99823 * 11 9 7 13 13 H 1.48492 * 109.47676 * 209.99944 * 11 9 7 14 14 H 1.48503 * 109.47117 * 330.00572 * 11 9 7 15 15 C 1.46903 * 111.00275 * 236.04934 * 2 1 3 16 16 C 1.50698 * 109.47057 * 293.95112 * 15 2 1 17 17 C 1.39870 * 125.89873 * 94.99822 * 16 15 2 18 18 C 1.35318 * 107.92236 * 179.76106 * 17 16 15 19 19 N 1.34948 * 107.74290 * 0.42279 * 18 17 16 20 20 H 0.97001 * 126.03958 * 179.84649 * 19 18 17 21 21 N 1.30835 * 125.89830 * 275.02619 * 16 15 2 22 22 H 1.09006 * 109.46780 * 183.95290 * 1 2 3 23 23 H 1.09002 * 109.47308 * 303.95073 * 1 2 3 24 24 H 1.09002 * 109.47717 * 63.95180 * 1 2 3 25 25 H 1.09000 * 109.47113 * 186.04432 * 3 2 1 26 26 H 1.08996 * 109.46761 * 306.04673 * 3 2 1 27 27 H 1.09000 * 109.47062 * 185.00156 * 4 3 2 28 28 H 1.08997 * 109.47132 * 305.00083 * 4 3 2 29 29 H 1.08996 * 109.47338 * 300.00150 * 6 5 4 30 30 H 1.08999 * 109.46885 * 59.99898 * 6 5 4 31 31 H 0.97007 * 119.99689 * 179.97438 * 10 9 7 32 32 H 1.09004 * 109.47347 * 173.95092 * 15 2 1 33 33 H 1.09004 * 109.46625 * 53.95061 * 15 2 1 34 34 H 1.08008 * 126.03860 * 0.02562 * 17 16 15 35 35 H 1.07999 * 126.12849 * 180.26834 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 8 2.2955 1.3976 2.3979 6 6 2.0222 1.9634 3.6813 7 6 2.7704 1.1940 4.7392 8 1 3.3929 0.3569 4.4594 9 6 2.6604 1.5587 6.0643 10 7 1.9021 2.5778 6.4050 11 14 3.5873 0.6046 7.3757 12 1 4.9268 1.2133 7.5769 13 1 2.8271 0.6489 8.6505 14 1 3.7452 -0.8069 6.9423 15 6 1.9954 -0.7659 -1.1376 16 6 1.6370 -2.2204 -0.9729 17 6 0.5248 -2.8592 -1.5308 18 6 0.5596 -4.1589 -1.1559 19 7 1.6499 -4.3341 -0.3802 20 1 1.9283 -5.1662 0.0334 21 7 2.3122 -3.1035 -0.2830 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8525 24 1 -0.3634 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5610 1.9274 -0.8309 27 1 1.9437 3.1011 1.2832 28 1 0.5531 2.0057 1.4692 29 1 2.3429 3.0050 3.6949 30 1 0.9520 1.9101 3.8813 31 1 1.8244 2.8341 7.3374 32 1 3.0798 -0.6610 -1.1757 33 1 1.5610 -0.3871 -2.0628 34 1 -0.2266 -2.3977 -2.1545 35 1 -0.1581 -4.9192 -1.4266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338993941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:14 Heat of formation + Delta-G solvation = 35.892260 kcal Electronic energy + Delta-G solvation = -16702.224035 eV Core-core repulsion = 13930.444750 eV Total energy + Delta-G solvation = -2771.779285 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12494 -37.76349 -35.93708 -32.68735 -31.99562 -29.96044 -29.19383 -27.38996 -26.77118 -24.15206 -22.18724 -21.43900 -20.56531 -19.53206 -18.11979 -16.29265 -16.00177 -15.65561 -14.91960 -14.53898 -14.44061 -14.16335 -13.71967 -13.56766 -13.43788 -12.83800 -12.51617 -12.02287 -11.70482 -11.63791 -11.39757 -11.01315 -10.74976 -10.65149 -10.51127 -10.31278 -9.90991 -9.42993 -8.97675 -8.74247 -8.68515 -8.04308 -7.96641 -6.01441 -4.01555 1.91960 2.72842 2.90719 3.36987 3.41329 3.48423 4.28113 4.44377 4.66500 4.78410 4.98529 5.20950 5.35079 5.43145 5.50963 5.59416 5.64799 5.69774 5.80243 5.87914 6.00963 6.05358 6.15659 6.27653 6.41227 6.60569 7.20971 7.25622 7.29790 7.34710 7.54879 7.75573 7.91490 8.28099 8.74258 9.14177 9.62964 11.10380 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.005182 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.519700 B = 5401.986647 C = 6201.943283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.521 5.521 3 C 0.062 3.938 4 C 0.066 3.934 5 O -0.379 6.379 6 C 0.194 3.806 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.902 5.902 11 Si 0.906 3.094 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.134 3.866 16 C 0.088 3.912 17 C -0.270 4.270 18 C 0.051 3.949 19 N -0.481 5.481 20 H 0.438 0.562 21 N -0.266 5.266 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.262 0.738 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.143 0.857 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 -9.368 -17.799 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.245 5.245 3 C -0.065 4.065 4 C -0.012 4.012 5 O -0.298 6.298 6 C 0.120 3.880 7 C -0.546 4.546 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.542 5.542 11 Si 0.734 3.266 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.196 1.196 15 C 0.004 3.996 16 C -0.080 4.080 17 C -0.300 4.300 18 C -0.096 4.096 19 N -0.188 5.188 20 H 0.281 0.719 21 N -0.090 5.090 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.038 0.962 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.161 0.839 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.177 -9.850 -16.509 19.485 hybrid contribution -0.826 -0.145 -0.153 0.852 sum -4.002 -9.996 -16.661 19.838 Atomic orbital electron populations 1.22463 0.87469 1.02376 1.00136 1.61744 1.07781 1.13687 1.41335 1.22164 1.00932 0.87516 0.95923 1.22265 0.96188 0.94525 0.88234 1.87968 1.69556 1.56812 1.15452 1.20163 0.95512 0.93453 0.78915 1.21089 1.27888 1.15178 0.90444 0.91521 1.24938 0.95751 0.95441 0.98455 1.69975 1.39187 1.27206 1.17785 0.86358 0.79519 0.80367 0.80386 1.20514 1.21184 1.19646 1.20375 1.01040 0.86066 0.92090 1.22139 0.94067 0.95886 0.95915 1.21423 1.03134 0.93764 1.11638 1.22519 0.92455 0.98641 0.96015 1.46439 1.20481 1.10825 1.41101 0.71903 1.77457 1.20217 0.89635 1.21663 0.91390 0.90890 0.96172 0.89974 0.94219 0.94293 0.94538 0.98043 0.97998 0.92825 0.89310 0.93187 0.83884 0.80990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.13 60.06 0.55 0.89 16 2 N -0.52 -8.46 4.70 -244.36 -1.15 -9.61 16 3 C 0.06 0.97 5.34 -3.82 -0.02 0.95 16 4 C 0.07 1.28 6.00 37.16 0.22 1.50 16 5 O -0.38 -9.71 10.27 -35.23 -0.36 -10.07 16 6 C 0.19 5.58 5.69 36.01 0.20 5.79 16 7 C -0.51 -15.68 9.43 -34.44 -0.32 -16.00 16 8 H 0.07 2.07 7.81 -52.48 -0.41 1.66 16 9 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.83 13.29 55.43 0.74 -27.10 16 11 Si 0.91 22.72 29.54 -169.99 -5.02 17.70 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.13 1.82 5.53 -4.98 -0.03 1.79 16 16 C 0.09 1.26 5.92 -82.41 -0.49 0.77 16 17 C -0.27 -3.05 9.75 -40.01 -0.39 -3.44 16 18 C 0.05 0.49 11.99 -17.22 -0.21 0.28 16 19 N -0.48 -5.47 7.36 30.45 0.22 -5.24 16 20 H 0.44 3.54 8.96 -182.60 -1.64 1.90 16 21 N -0.27 -4.20 12.70 33.67 0.43 -3.78 16 22 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 23 H 0.07 1.15 6.21 -51.93 -0.32 0.83 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 26 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.69 6.26 -51.93 -0.33 0.37 16 29 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.09 1.21 7.93 -51.93 -0.41 0.79 16 33 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -36.06 298.32 -7.60 -43.66 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.37 Total: -4.12 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.58 Total: -5.93 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.24 Total: -45.73 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.36 Total: -10.07 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.06 -7.60 -43.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338993941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.556 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds