Wall clock time and date at job start Mon Mar 30 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46910 * 110.99951 * 2 1 4 4 C 1.53002 * 109.46714 * 66.04812 * 3 2 1 5 5 O 1.42894 * 109.47249 * 65.00038 * 4 3 2 6 6 C 1.42900 * 114.00090 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47213 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00045 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00086 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99735 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46949 * 89.99823 * 11 9 7 13 13 H 1.48492 * 109.47676 * 209.99944 * 11 9 7 14 14 H 1.48503 * 109.47117 * 330.00572 * 11 9 7 15 15 C 1.46903 * 111.00275 * 236.04934 * 2 1 3 16 16 C 1.50698 * 109.47057 * 293.95112 * 15 2 1 17 17 C 1.39870 * 125.89873 * 94.99822 * 16 15 2 18 18 C 1.35318 * 107.92236 * 179.76106 * 17 16 15 19 19 N 1.34948 * 107.74290 * 0.42279 * 18 17 16 20 20 H 0.97001 * 126.03958 * 179.84649 * 19 18 17 21 21 N 1.30835 * 125.89830 * 275.02619 * 16 15 2 22 22 H 1.09006 * 109.46780 * 183.95290 * 1 2 3 23 23 H 1.09002 * 109.47308 * 303.95073 * 1 2 3 24 24 H 1.09002 * 109.47717 * 63.95180 * 1 2 3 25 25 H 1.09000 * 109.47113 * 186.04432 * 3 2 1 26 26 H 1.08996 * 109.46761 * 306.04673 * 3 2 1 27 27 H 1.09000 * 109.47062 * 185.00156 * 4 3 2 28 28 H 1.08997 * 109.47132 * 305.00083 * 4 3 2 29 29 H 1.08996 * 109.47338 * 300.00150 * 6 5 4 30 30 H 1.08999 * 109.46885 * 59.99898 * 6 5 4 31 31 H 0.97007 * 119.99689 * 179.97438 * 10 9 7 32 32 H 1.09004 * 109.47347 * 173.95092 * 15 2 1 33 33 H 1.09004 * 109.46625 * 53.95061 * 15 2 1 34 34 H 1.08008 * 126.03860 * 0.02562 * 17 16 15 35 35 H 1.07999 * 126.12849 * 180.26834 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 8 2.2955 1.3976 2.3979 6 6 2.0222 1.9634 3.6813 7 6 2.7704 1.1940 4.7392 8 1 3.3929 0.3569 4.4594 9 6 2.6604 1.5587 6.0643 10 7 1.9021 2.5778 6.4050 11 14 3.5873 0.6046 7.3757 12 1 4.9268 1.2133 7.5769 13 1 2.8271 0.6489 8.6505 14 1 3.7452 -0.8069 6.9423 15 6 1.9954 -0.7659 -1.1376 16 6 1.6370 -2.2204 -0.9729 17 6 0.5248 -2.8592 -1.5308 18 6 0.5596 -4.1589 -1.1559 19 7 1.6499 -4.3341 -0.3802 20 1 1.9283 -5.1662 0.0334 21 7 2.3122 -3.1035 -0.2830 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8525 24 1 -0.3634 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5610 1.9274 -0.8309 27 1 1.9437 3.1011 1.2832 28 1 0.5531 2.0057 1.4692 29 1 2.3429 3.0050 3.6949 30 1 0.9520 1.9101 3.8813 31 1 1.8244 2.8341 7.3374 32 1 3.0798 -0.6610 -1.1757 33 1 1.5610 -0.3871 -2.0628 34 1 -0.2266 -2.3977 -2.1545 35 1 -0.1581 -4.9192 -1.4266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338993941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:14 Heat of formation + Delta-G solvation = 7.793717 kcal Electronic energy + Delta-G solvation = -16703.442479 eV Core-core repulsion = 13930.444750 eV Total energy + Delta-G solvation = -2772.997730 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.00872 -39.19292 -37.63188 -34.91238 -33.09473 -30.89896 -30.63991 -28.86839 -28.45592 -25.45816 -24.43811 -22.35970 -21.81490 -20.50506 -18.94683 -18.60578 -17.44668 -17.32652 -16.49115 -15.97729 -15.82899 -15.66182 -15.03715 -14.81770 -14.36301 -14.32111 -13.66535 -13.62096 -13.33777 -13.08002 -12.77374 -12.69833 -12.62318 -12.29399 -12.17933 -11.73237 -11.44536 -11.23871 -10.84162 -10.40408 -10.14538 -9.58671 -9.09760 -8.31780 -6.43405 1.06446 1.37856 1.41288 1.53555 1.82713 2.13044 2.35195 3.01409 3.15310 3.31532 3.78246 4.03648 4.18709 4.26245 4.40355 4.44055 4.57730 4.61475 4.73512 4.74013 4.78571 4.85228 4.91815 5.00176 5.11152 5.18334 5.20870 5.55831 5.73070 5.98664 6.17484 6.19496 6.56819 6.58672 6.84791 6.89215 7.28997 8.80698 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.005182 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.519700 B = 5401.986647 C = 6201.943283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.556 5.556 3 C 0.071 3.929 4 C 0.055 3.945 5 O -0.398 6.398 6 C 0.210 3.790 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.982 3.018 12 H -0.265 1.265 13 H -0.271 1.271 14 H -0.270 1.270 15 C 0.137 3.863 16 C 0.071 3.929 17 C -0.285 4.285 18 C 0.069 3.931 19 N -0.479 5.479 20 H 0.448 0.552 21 N -0.330 5.330 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.039 0.961 29 H -0.014 1.014 30 H -0.019 1.019 31 H 0.271 0.729 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.165 0.835 35 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -10.458 -18.617 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.282 5.282 3 C -0.056 4.056 4 C -0.023 4.023 5 O -0.318 6.318 6 C 0.135 3.865 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.191 4.191 10 N -0.570 5.570 11 Si 0.804 3.196 12 H -0.190 1.190 13 H -0.196 1.196 14 H -0.194 1.194 15 C 0.008 3.992 16 C -0.096 4.096 17 C -0.315 4.315 18 C -0.079 4.079 19 N -0.188 5.188 20 H 0.294 0.706 21 N -0.155 5.155 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.003 0.997 30 H -0.001 1.001 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.183 0.817 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.706 -10.933 -17.350 20.840 hybrid contribution -0.735 0.175 0.020 0.755 sum -4.441 -10.758 -17.330 20.876 Atomic orbital electron populations 1.22370 0.86631 1.02096 1.00652 1.61626 1.08878 1.14078 1.43596 1.22080 1.01041 0.87890 0.94576 1.22665 0.96078 0.95417 0.88100 1.87922 1.70584 1.57745 1.15514 1.19770 0.93785 0.92435 0.80538 1.21374 1.29165 1.15823 0.92058 0.92669 1.25933 0.96273 0.96250 1.00620 1.70071 1.39765 1.28205 1.18934 0.85209 0.78532 0.78640 0.77170 1.19009 1.19559 1.19408 1.20396 1.00590 0.85901 0.92334 1.22395 0.95069 0.95977 0.96150 1.21750 1.02965 0.94441 1.12344 1.23278 0.91747 0.99197 0.93672 1.46482 1.20764 1.10287 1.41276 0.70616 1.77348 1.22652 0.91562 1.23945 0.91677 0.93133 0.93057 0.90345 0.90134 0.93210 0.94245 0.99661 1.00128 0.92027 0.90306 0.90131 0.81748 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.13 127.69 1.17 2.00 16 2 N -0.56 -17.73 4.70 -927.02 -4.36 -22.09 16 3 C 0.07 2.17 5.34 86.30 0.46 2.63 16 4 C 0.05 2.14 6.00 71.98 0.43 2.57 16 5 O -0.40 -21.08 10.27 -148.98 -1.53 -22.61 16 6 C 0.21 12.55 5.69 71.24 0.41 12.96 16 7 C -0.55 -34.65 9.43 25.60 0.24 -34.41 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.01 0.45 5.46 84.65 0.46 0.92 16 10 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 11 Si 0.98 46.54 29.54 68.60 2.03 48.57 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 C 0.14 3.58 5.53 85.56 0.47 4.05 16 16 C 0.07 1.97 5.92 43.10 0.26 2.23 16 17 C -0.29 -5.83 9.75 21.99 0.21 -5.62 16 18 C 0.07 1.12 11.99 83.54 1.00 2.13 16 19 N -0.48 -10.35 7.36 -57.59 -0.42 -10.78 16 20 H 0.45 6.82 8.96 -213.33 -1.91 4.91 16 21 N -0.33 -10.47 12.70 -47.39 -0.60 -11.07 16 22 H 0.06 1.81 6.55 -2.38 -0.02 1.79 16 23 H 0.05 1.59 6.21 -2.39 -0.01 1.58 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 2.42 7.93 -2.39 -0.02 2.40 16 26 H 0.08 1.80 8.12 -2.39 -0.02 1.78 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.52 6.26 -2.39 -0.01 1.50 16 29 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H -0.02 -1.19 8.14 -2.39 -0.02 -1.20 16 31 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 32 H 0.08 2.15 7.93 -2.39 -0.02 2.13 16 33 H 0.08 1.56 8.12 -2.38 -0.02 1.54 16 34 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.22 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -79.89 298.32 -0.32 -80.21 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -0.83 Total: 5.86 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.11 Total: -10.54 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -5.10 Total: -101.48 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.53 Total: -22.61 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -79.89 -0.32 -80.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338993941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.002 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds