Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27563 * 126.41657 * 2 1 4 4 N 1.39146 * 113.16441 * 180.02562 * 3 2 1 5 5 C 1.34954 * 111.12200 * 359.97438 * 4 3 2 6 6 O 1.21306 * 127.49961 * 179.74206 * 5 4 3 7 7 C 1.51447 * 126.41358 * 180.02562 * 2 1 3 8 8 H 1.08997 * 110.60677 * 61.46707 * 7 2 1 9 9 C 1.53002 * 110.60579 * 298.49457 * 7 2 1 10 10 C 1.53002 * 109.46768 * 179.41982 * 9 7 2 11 11 N 1.46898 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00129 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47127 * 324.99890 * 12 11 10 14 14 C 1.52996 * 109.47472 * 84.99750 * 12 11 10 15 15 C 1.50699 * 109.47275 * 205.00250 * 12 11 10 16 16 H 1.08005 * 119.99748 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00438 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99790 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 120.00160 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.46756 * 59.99971 * 19 17 15 21 21 H 1.48502 * 109.46847 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47033 * 300.00069 * 19 17 15 23 23 H 1.08998 * 109.47416 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47017 * 119.98148 * 1 2 3 25 25 H 1.09008 * 109.47218 * 239.97790 * 1 2 3 26 26 H 0.97006 * 124.44096 * 180.02562 * 4 3 2 27 27 H 1.08992 * 109.47306 * 299.41751 * 9 7 2 28 28 H 1.09002 * 109.47322 * 59.42666 * 9 7 2 29 29 H 1.09003 * 109.47587 * 300.00411 * 10 9 7 30 30 H 1.09001 * 109.47160 * 59.99708 * 10 9 7 31 31 H 1.00902 * 110.99575 * 303.95730 * 11 10 9 32 32 H 1.08998 * 109.47228 * 179.97438 * 14 12 11 33 33 H 1.08995 * 109.47091 * 300.00079 * 14 12 11 34 34 H 1.09002 * 109.46825 * 60.00481 * 14 12 11 35 35 H 0.97007 * 120.00099 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6187 0.7076 -0.0006 5 6 3.8035 -0.6293 -0.0004 6 8 4.8579 -1.2290 -0.0051 7 6 2.4060 -1.2188 -0.0005 8 1 2.2416 -1.8164 -0.8971 9 6 2.1758 -2.0582 1.2577 10 6 3.0852 -3.2882 1.2235 11 7 2.8638 -4.0946 2.4313 12 6 3.7225 -5.2865 2.4332 13 1 3.8389 -5.6521 1.4129 14 6 5.0948 -4.9255 3.0053 15 6 3.0907 -6.3594 3.2821 16 1 2.1460 -6.1743 3.7717 17 6 3.7187 -7.5774 3.4340 18 7 4.8688 -7.8031 2.8375 19 14 2.9359 -8.9072 4.4869 20 1 1.6035 -9.2571 3.9324 21 1 3.8039 -10.1121 4.4887 22 1 2.7783 -8.4090 5.8769 23 1 -0.3634 1.0276 0.0005 24 1 -0.3633 -0.5136 -0.8902 25 1 -0.3634 -0.5142 0.8898 26 1 4.3361 1.3605 -0.0003 27 1 2.4056 -1.4610 2.1400 28 1 1.1343 -2.3775 1.2961 29 1 2.8555 -3.8856 0.3411 30 1 4.1267 -2.9691 1.1851 31 1 3.0075 -3.5444 3.2647 32 1 5.7318 -5.8100 3.0071 33 1 5.5517 -4.1496 2.3912 34 1 4.9784 -4.5600 4.0256 35 1 5.3109 -8.6599 2.9446 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380168840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = 7.973607 kcal Electronic energy + Delta-G solvation = -16937.261712 eV Core-core repulsion = 14164.271783 eV Total energy + Delta-G solvation = -2772.989929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45417 -37.59074 -36.32612 -33.93435 -32.62205 -31.38625 -28.57365 -28.27036 -25.59811 -25.02241 -22.11694 -20.71603 -20.10858 -20.03832 -17.86378 -16.39304 -16.17780 -15.41823 -15.08508 -14.61156 -14.27990 -13.82689 -13.65270 -13.34857 -13.17443 -12.72792 -12.44401 -12.14559 -11.96876 -11.63402 -11.52995 -11.12376 -10.91031 -10.76115 -10.69798 -10.26230 -10.07774 -9.80106 -9.66165 -9.08316 -8.92581 -8.30881 -7.17223 -5.92770 -3.96506 1.41290 2.49894 2.56493 3.37483 3.41317 3.44381 3.70618 3.91875 4.46830 4.61925 4.82294 5.10790 5.27170 5.28718 5.38233 5.48063 5.54545 5.62292 5.85176 5.92163 6.02276 6.40780 6.49661 6.62055 6.79991 6.93573 7.18752 7.40836 7.44030 7.80573 7.85460 7.93105 8.33458 8.58282 8.67339 9.10177 9.68466 11.14208 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041927 B = 0.004841 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.665259 B = 5782.094758 C = 6285.419038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.105 3.895 3 N -0.244 5.244 4 N -0.579 5.579 5 C 0.501 3.499 6 O -0.485 6.485 7 C -0.141 4.141 8 H 0.136 0.864 9 C -0.085 4.085 10 C 0.051 3.949 11 N -0.684 5.684 12 C 0.212 3.788 13 H 0.033 0.967 14 C -0.169 4.169 15 C -0.495 4.495 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.432 0.568 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.322 0.678 32 H 0.088 0.912 33 H 0.007 0.993 34 H 0.026 0.974 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 15.913 -6.095 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 N -0.052 5.052 4 N -0.327 5.327 5 C 0.286 3.714 6 O -0.355 6.355 7 C -0.165 4.165 8 H 0.153 0.847 9 C -0.125 4.125 10 C -0.080 4.080 11 N -0.313 5.313 12 C 0.104 3.896 13 H 0.051 0.949 14 C -0.228 4.228 15 C -0.534 4.534 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.204 1.204 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.276 0.724 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.026 0.974 34 H 0.045 0.955 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.557 16.035 -6.395 18.845 hybrid contribution 1.169 -0.762 0.695 1.559 sum -6.388 15.274 -5.700 17.510 Atomic orbital electron populations 1.20404 0.84588 1.04430 1.04463 1.25397 0.97593 0.90498 0.95356 1.74607 0.89086 1.26561 1.14948 1.47558 1.04507 1.07809 1.72840 1.21382 0.91515 0.83109 0.75418 1.90851 1.31002 1.65908 1.47742 1.21880 0.92387 0.97610 1.04631 0.84657 1.21313 1.02741 0.95664 0.92741 1.21998 0.97160 0.92800 0.95993 1.60861 1.59439 1.08858 1.02120 1.19151 0.87112 0.86331 0.96982 0.94904 1.22419 1.02133 1.00673 0.97617 1.21126 1.06135 0.97016 1.29131 0.92019 1.24964 0.95022 0.98447 0.96166 1.69890 1.15999 1.23775 1.44057 0.86565 0.79084 0.80953 0.80764 1.20298 1.21500 1.20418 0.89944 0.89143 0.88809 0.72359 0.92003 0.89104 0.91601 0.94472 0.86181 0.89331 0.97422 0.95507 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.49 36.01 0.38 -0.07 16 2 C 0.10 1.00 6.93 -78.72 -0.55 0.45 16 3 N -0.24 -2.69 12.21 35.53 0.43 -2.26 16 4 N -0.58 -6.87 7.13 31.51 0.22 -6.65 16 5 C 0.50 7.22 8.05 -10.43 -0.08 7.13 16 6 O -0.48 -8.91 16.23 5.54 0.09 -8.83 16 7 C -0.14 -1.65 3.07 -92.08 -0.28 -1.94 16 8 H 0.14 1.42 8.14 -51.93 -0.42 1.00 16 9 C -0.09 -1.15 5.01 -26.73 -0.13 -1.28 16 10 C 0.05 0.93 5.29 -3.82 -0.02 0.91 16 11 N -0.68 -14.75 6.23 -107.95 -0.67 -15.42 16 12 C 0.21 5.52 2.57 -68.87 -0.18 5.34 16 13 H 0.03 0.94 7.80 -51.93 -0.40 0.54 16 14 C -0.17 -4.32 8.94 37.16 0.33 -3.99 16 15 C -0.50 -13.96 8.84 -34.44 -0.30 -14.26 16 16 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 17 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 18 N -0.90 -26.32 11.32 55.43 0.63 -25.69 16 19 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.43 4.21 8.96 -183.31 -1.64 2.56 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 30 H 0.04 0.76 5.51 -51.93 -0.29 0.48 16 31 H 0.32 6.65 8.47 -39.29 -0.33 6.32 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.01 0.17 7.45 -51.93 -0.39 -0.22 16 34 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 293.90 15.07 4.43 4.43 Total: -1.00 -32.69 293.90 -7.11 -39.80 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.29 Total: 4.16 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.93 Total: -6.26 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.61 Total: -50.01 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.69 -7.11 -39.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380168840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.778 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds