Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27563 * 126.41657 * 2 1 4 4 N 1.39146 * 113.16441 * 180.02562 * 3 2 1 5 5 C 1.34954 * 111.12200 * 359.97438 * 4 3 2 6 6 O 1.21306 * 127.49961 * 179.74206 * 5 4 3 7 7 C 1.51447 * 126.41358 * 180.02562 * 2 1 3 8 8 H 1.08997 * 110.60677 * 61.46707 * 7 2 1 9 9 C 1.53002 * 110.60579 * 298.49457 * 7 2 1 10 10 C 1.53002 * 109.46768 * 179.41982 * 9 7 2 11 11 N 1.46898 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00129 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47127 * 324.99890 * 12 11 10 14 14 C 1.52996 * 109.47472 * 84.99750 * 12 11 10 15 15 C 1.50699 * 109.47275 * 205.00250 * 12 11 10 16 16 H 1.08005 * 119.99748 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00438 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99790 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 120.00160 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.46756 * 59.99971 * 19 17 15 21 21 H 1.48502 * 109.46847 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47033 * 300.00069 * 19 17 15 23 23 H 1.08998 * 109.47416 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47017 * 119.98148 * 1 2 3 25 25 H 1.09008 * 109.47218 * 239.97790 * 1 2 3 26 26 H 0.97006 * 124.44096 * 180.02562 * 4 3 2 27 27 H 1.08992 * 109.47306 * 299.41751 * 9 7 2 28 28 H 1.09002 * 109.47322 * 59.42666 * 9 7 2 29 29 H 1.09003 * 109.47587 * 300.00411 * 10 9 7 30 30 H 1.09001 * 109.47160 * 59.99708 * 10 9 7 31 31 H 1.00902 * 110.99575 * 303.95730 * 11 10 9 32 32 H 1.08998 * 109.47228 * 179.97438 * 14 12 11 33 33 H 1.08995 * 109.47091 * 300.00079 * 14 12 11 34 34 H 1.09002 * 109.46825 * 60.00481 * 14 12 11 35 35 H 0.97007 * 120.00099 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6187 0.7076 -0.0006 5 6 3.8035 -0.6293 -0.0004 6 8 4.8579 -1.2290 -0.0051 7 6 2.4060 -1.2188 -0.0005 8 1 2.2416 -1.8164 -0.8971 9 6 2.1758 -2.0582 1.2577 10 6 3.0852 -3.2882 1.2235 11 7 2.8638 -4.0946 2.4313 12 6 3.7225 -5.2865 2.4332 13 1 3.8389 -5.6521 1.4129 14 6 5.0948 -4.9255 3.0053 15 6 3.0907 -6.3594 3.2821 16 1 2.1460 -6.1743 3.7717 17 6 3.7187 -7.5774 3.4340 18 7 4.8688 -7.8031 2.8375 19 14 2.9359 -8.9072 4.4869 20 1 1.6035 -9.2571 3.9324 21 1 3.8039 -10.1121 4.4887 22 1 2.7783 -8.4090 5.8769 23 1 -0.3634 1.0276 0.0005 24 1 -0.3633 -0.5136 -0.8902 25 1 -0.3634 -0.5142 0.8898 26 1 4.3361 1.3605 -0.0003 27 1 2.4056 -1.4610 2.1400 28 1 1.1343 -2.3775 1.2961 29 1 2.8555 -3.8856 0.3411 30 1 4.1267 -2.9691 1.1851 31 1 3.0075 -3.5444 3.2647 32 1 5.7318 -5.8100 3.0071 33 1 5.5517 -4.1496 2.3912 34 1 4.9784 -4.5600 4.0256 35 1 5.3109 -8.6599 2.9446 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380168840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -17.265302 kcal Electronic energy + Delta-G solvation = -16938.356153 eV Core-core repulsion = 14164.271783 eV Total energy + Delta-G solvation = -2774.084370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.43119 -38.71102 -38.07185 -35.41428 -34.02041 -32.77960 -30.20212 -28.97754 -27.30524 -26.89048 -23.48890 -22.20281 -21.65225 -20.95541 -18.88558 -18.33105 -17.42478 -16.77381 -16.54864 -16.11601 -15.72839 -15.14027 -14.91690 -14.52712 -14.35531 -13.99198 -13.61128 -13.34019 -13.19756 -13.15206 -12.88783 -12.79876 -12.57097 -12.44019 -12.35618 -12.17645 -11.89969 -11.49240 -11.07875 -10.72513 -10.47768 -10.00420 -8.99205 -8.07904 -6.20426 0.52901 1.45638 1.48179 1.50014 1.55885 1.66838 2.45936 2.79602 3.03799 3.20264 3.49110 3.82915 4.03124 4.19866 4.43731 4.48476 4.65723 4.74869 4.76474 4.84063 4.95091 4.99552 5.03052 5.08876 5.20137 5.38075 5.40079 5.65536 5.66885 5.80026 6.25409 6.50424 6.61360 6.80208 6.86196 6.94127 7.49741 8.98017 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041927 B = 0.004841 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.665259 B = 5782.094758 C = 6285.419038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.130 3.870 3 N -0.262 5.262 4 N -0.574 5.574 5 C 0.488 3.512 6 O -0.538 6.538 7 C -0.140 4.140 8 H 0.151 0.849 9 C -0.070 4.070 10 C 0.053 3.947 11 N -0.678 5.678 12 C 0.215 3.785 13 H -0.002 1.002 14 C -0.156 4.156 15 C -0.514 4.514 16 H 0.061 0.939 17 C 0.005 3.995 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.270 1.270 23 H 0.094 0.906 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.438 0.562 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.012 0.988 31 H 0.329 0.671 32 H 0.062 0.938 33 H 0.012 0.988 34 H 0.033 0.967 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 16.598 -5.685 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 N -0.070 5.070 4 N -0.320 5.320 5 C 0.275 3.725 6 O -0.413 6.413 7 C -0.164 4.164 8 H 0.169 0.831 9 C -0.109 4.109 10 C -0.077 4.077 11 N -0.308 5.308 12 C 0.107 3.893 13 H 0.016 0.984 14 C -0.215 4.215 15 C -0.553 4.553 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.792 3.208 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.195 1.195 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.127 0.873 26 H 0.284 0.716 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.146 0.854 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.052 0.948 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.162 16.782 -5.987 20.512 hybrid contribution 1.940 -0.924 0.518 2.210 sum -8.222 15.857 -5.469 18.681 Atomic orbital electron populations 1.20686 0.81269 1.05889 1.06176 1.25990 0.99006 0.88464 0.92854 1.74717 0.88324 1.26864 1.17105 1.47605 1.05509 1.07197 1.71699 1.21851 0.91903 0.83980 0.74791 1.90819 1.32912 1.67089 1.50435 1.21892 0.91496 0.98531 1.04493 0.83145 1.21145 1.02767 0.93417 0.93582 1.22005 0.97185 0.94243 0.94229 1.60748 1.57958 1.08382 1.03670 1.18926 0.87873 0.87945 0.94605 0.98411 1.22243 1.01624 0.99564 0.98081 1.21424 1.06301 0.97997 1.29545 0.92053 1.25819 0.95436 1.00758 0.97312 1.70038 1.17239 1.24302 1.45143 0.85482 0.78275 0.77875 0.79178 1.19453 1.21265 1.19515 0.88696 0.86878 0.87330 0.71628 0.91969 0.86429 0.92372 0.96937 0.85406 0.91942 0.96868 0.94789 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.49 71.24 0.75 0.18 16 2 C 0.13 2.06 6.93 46.83 0.32 2.39 16 3 N -0.26 -5.23 12.21 -40.84 -0.50 -5.73 16 4 N -0.57 -13.21 7.13 -172.50 -1.23 -14.44 16 5 C 0.49 14.04 8.05 87.94 0.71 14.75 16 6 O -0.54 -20.56 16.23 -3.11 -0.05 -20.61 16 7 C -0.14 -3.03 3.07 -11.74 -0.04 -3.07 16 8 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 9 C -0.07 -1.74 5.01 30.60 0.15 -1.59 16 10 C 0.05 1.95 5.29 86.30 0.46 2.40 16 11 N -0.68 -29.08 6.23 -495.46 -3.09 -32.17 16 12 C 0.22 11.42 2.57 44.17 0.11 11.53 16 13 H 0.00 -0.12 7.80 -2.38 -0.02 -0.14 16 14 C -0.16 -8.12 8.94 71.98 0.64 -7.48 16 15 C -0.51 -29.02 8.84 25.60 0.23 -28.80 16 16 H 0.06 3.40 7.81 -2.91 -0.02 3.37 16 17 C 0.00 0.26 5.30 84.65 0.45 0.70 16 18 N -0.93 -55.15 11.32 21.45 0.24 -54.91 16 19 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.44 8.48 8.96 -213.92 -1.92 6.56 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.20 8.06 -2.39 -0.02 2.18 16 30 H 0.01 0.53 5.51 -2.39 -0.01 0.51 16 31 H 0.33 13.34 8.47 -89.69 -0.76 12.58 16 32 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 33 H 0.01 0.62 7.45 -2.39 -0.02 0.60 16 34 H 0.03 1.66 8.13 -2.39 -0.02 1.64 16 35 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -71.92 293.90 -0.38 -72.30 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -1.57 Total: 18.23 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 3.79 Total: -8.97 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.57 Total: -107.24 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.92 -0.38 -72.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380168840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -71.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds