Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30868 * 125.81620 * 2 1 4 4 N 1.40078 * 108.35534 * 180.24804 * 3 2 1 5 5 C 1.46506 * 126.06773 * 179.77745 * 4 3 2 6 6 C 1.53000 * 109.47161 * 269.97183 * 5 4 3 7 7 O 1.42894 * 109.47343 * 179.97438 * 6 5 4 8 8 C 1.42906 * 114.00285 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.46971 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00503 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99826 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00356 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00075 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.47101 * 89.99815 * 13 11 9 15 15 H 1.48494 * 109.47260 * 210.00172 * 13 11 9 16 16 H 1.48506 * 109.46792 * 330.00363 * 13 11 9 17 17 C 1.35966 * 107.85936 * 359.75690 * 4 3 2 18 18 C 1.50704 * 126.22387 * 179.97438 * 17 4 3 19 19 C 1.35698 * 107.55153 * 359.97438 * 17 4 3 20 20 N 1.40803 * 126.06464 * 179.97438 * 19 17 4 21 21 H 1.09006 * 109.46799 * 270.16418 * 1 2 3 22 22 H 1.09008 * 109.46991 * 30.15356 * 1 2 3 23 23 H 1.08999 * 109.47340 * 150.15978 * 1 2 3 24 24 H 1.08997 * 109.47201 * 29.97182 * 5 4 3 25 25 H 1.09001 * 109.46665 * 149.97864 * 5 4 3 26 26 H 1.09006 * 109.47241 * 300.00668 * 6 5 4 27 27 H 1.09008 * 109.46985 * 60.00107 * 6 5 4 28 28 H 1.08995 * 109.47139 * 300.00527 * 8 7 6 29 29 H 1.09004 * 109.46772 * 59.99922 * 8 7 6 30 30 H 0.96997 * 120.00211 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.46566 * 269.99722 * 18 17 4 32 32 H 1.08997 * 109.47069 * 29.99238 * 18 17 4 33 33 H 1.08999 * 109.47499 * 149.99735 * 18 17 4 34 34 H 0.97001 * 120.00393 * 0.02562 * 20 19 17 35 35 H 0.97005 * 119.99882 * 179.72643 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0612 0.0000 4 7 3.6090 0.6409 -0.0058 5 6 4.7871 1.5118 -0.0123 6 6 5.1909 1.8127 -1.4570 7 8 6.3397 2.6626 -1.4634 8 6 6.8010 3.0065 -2.7715 9 6 8.0095 3.8997 -2.6592 10 1 8.3878 4.1766 -1.6862 11 6 8.6323 4.3633 -3.7985 12 7 9.6874 5.1424 -3.7006 13 14 7.9785 3.8838 -5.4814 14 1 6.9725 4.8822 -5.9245 15 1 9.0990 3.8445 -6.4550 16 1 7.3440 2.5434 -5.4024 17 6 3.6185 -0.7187 -0.0037 18 6 4.8404 -1.6008 -0.0088 19 6 2.3276 -1.1369 0.0036 20 7 1.8898 -2.4752 0.0075 21 1 -0.3633 0.0029 1.0277 22 1 -0.3633 0.8887 -0.5163 23 1 -0.3634 -0.8914 -0.5113 24 1 4.5526 2.4442 0.5011 25 1 5.6106 1.0127 0.4986 26 1 5.4255 0.8802 -1.9705 27 1 4.3674 2.3116 -1.9681 28 1 7.0692 2.0991 -3.3125 29 1 6.0106 3.5300 -3.3095 30 1 10.1258 5.4682 -4.5021 31 1 5.1295 -1.8150 -1.0377 32 1 5.6586 -1.0910 0.4999 33 1 4.6169 -2.5343 0.5077 34 1 2.5374 -3.1974 0.0051 35 1 0.9406 -2.6750 0.0168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385293739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = 22.612126 kcal Electronic energy + Delta-G solvation = -16601.400044 eV Core-core repulsion = 13829.044888 eV Total energy + Delta-G solvation = -2772.355155 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.17531 -37.20721 -34.88694 -33.71584 -32.70040 -31.10159 -29.83245 -28.16387 -26.46998 -26.04716 -22.48876 -21.91137 -20.04890 -19.65722 -16.99354 -16.94805 -16.04439 -15.66065 -15.44395 -15.23663 -14.54846 -14.39775 -13.61076 -13.49860 -13.24410 -13.12617 -12.68166 -12.57554 -12.47967 -12.21137 -11.89487 -11.32465 -11.19925 -11.01209 -10.74463 -10.51877 -10.49417 -9.92284 -9.26591 -8.96839 -8.94642 -8.56036 -7.12327 -6.16210 -4.16126 1.90485 2.48546 2.90768 3.22339 3.29358 3.30598 4.02909 4.31610 4.48335 4.70069 4.73775 5.02750 5.10095 5.15131 5.25615 5.41229 5.46624 5.49197 5.55377 5.56520 5.68821 5.77810 5.91715 6.01383 6.19354 6.52142 6.52520 6.91841 7.11102 7.52126 7.57558 7.73909 7.88184 7.97600 8.57067 8.93944 9.42270 10.96586 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039151 B = 0.004367 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.014490 B = 6409.497251 C = 6489.840828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.028 3.972 3 N -0.271 5.271 4 N -0.358 5.358 5 C 0.143 3.857 6 C 0.047 3.953 7 O -0.379 6.379 8 C 0.172 3.828 9 C -0.522 4.522 10 H 0.084 0.916 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.005 3.995 18 C -0.081 4.081 19 C 0.055 3.945 20 N -0.875 5.875 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.005 0.995 29 H 0.001 0.999 30 H 0.267 0.733 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.393 0.607 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 -15.931 6.822 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 N -0.095 5.095 4 N -0.147 5.147 5 C 0.021 3.979 6 C -0.032 4.032 7 O -0.297 6.297 8 C 0.097 3.903 9 C -0.560 4.560 10 H 0.102 0.898 11 C -0.128 4.128 12 N -0.531 5.531 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.124 4.124 18 C -0.139 4.139 19 C -0.053 4.053 20 N -0.423 5.423 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.220 0.780 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.469 -14.287 6.872 22.151 hybrid contribution -0.418 -1.429 -1.276 1.960 sum -15.887 -15.716 5.596 23.037 Atomic orbital electron populations 1.20047 0.87036 1.02898 1.02458 1.21969 0.96637 0.89523 1.05862 1.77221 0.86683 1.22311 1.23313 1.48020 1.04522 1.03482 1.58678 1.21391 0.83471 0.94930 0.98077 1.22564 0.90578 0.94860 0.95155 1.87839 1.43425 1.66872 1.31574 1.20643 0.94771 0.94869 0.80046 1.20861 1.10277 1.29004 0.95859 0.89811 1.24747 0.94664 0.94552 0.98834 1.69867 1.20172 1.33629 1.29475 0.86861 0.79077 0.79641 0.84257 1.19814 1.20640 1.19147 1.20299 0.95514 0.84847 1.11737 1.20252 0.93303 0.97484 1.02859 1.17195 0.90756 0.86346 1.11004 1.41432 1.08800 1.01888 1.90204 0.91016 0.90870 0.91196 0.87964 0.88224 0.93922 0.93469 0.97762 0.98155 0.92254 0.90831 0.90961 0.90747 0.77962 0.77833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.29 36.01 0.37 -0.24 16 2 C 0.03 0.38 7.22 -82.26 -0.59 -0.21 16 3 N -0.27 -4.37 12.57 33.74 0.42 -3.94 16 4 N -0.36 -5.49 3.64 -56.80 -0.21 -5.70 16 5 C 0.14 2.19 6.63 -4.04 -0.03 2.17 16 6 C 0.05 0.87 6.26 37.16 0.23 1.10 16 7 O -0.38 -8.77 10.33 -35.23 -0.36 -9.13 16 8 C 0.17 4.40 4.76 36.00 0.17 4.57 16 9 C -0.52 -15.52 9.99 -34.44 -0.34 -15.86 16 10 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 11 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 13 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 17 C 0.00 0.06 6.98 -81.67 -0.57 -0.51 16 18 C -0.08 -0.82 9.95 36.01 0.36 -0.46 16 19 C 0.06 0.69 7.17 -83.90 -0.60 0.09 16 20 N -0.88 -7.54 9.19 32.29 0.30 -7.25 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.07 0.50 7.69 -51.93 -0.40 0.10 16 24 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 25 H 0.10 1.35 7.09 -51.93 -0.37 0.98 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.00 0.12 7.20 -51.93 -0.37 -0.26 16 29 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 30 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.72 7.12 -51.93 -0.37 0.35 16 33 H 0.07 0.58 7.61 -51.93 -0.40 0.19 16 34 H 0.39 2.74 8.22 -40.82 -0.34 2.40 16 35 H 0.39 2.63 8.35 -40.82 -0.34 2.29 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -33.76 298.70 -5.45 -39.21 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.10 Total: -0.47 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.10 Total: -7.27 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 1.29 Total: -43.59 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.36 Total: -9.13 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.76 -5.45 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385293739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.817 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds