Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30868 * 125.81620 * 2 1 4 4 N 1.40078 * 108.35534 * 180.24804 * 3 2 1 5 5 C 1.46506 * 126.06773 * 179.77745 * 4 3 2 6 6 C 1.53000 * 109.47161 * 269.97183 * 5 4 3 7 7 O 1.42894 * 109.47343 * 179.97438 * 6 5 4 8 8 C 1.42906 * 114.00285 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.46971 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00503 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99826 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00356 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00075 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.47101 * 89.99815 * 13 11 9 15 15 H 1.48494 * 109.47260 * 210.00172 * 13 11 9 16 16 H 1.48506 * 109.46792 * 330.00363 * 13 11 9 17 17 C 1.35966 * 107.85936 * 359.75690 * 4 3 2 18 18 C 1.50704 * 126.22387 * 179.97438 * 17 4 3 19 19 C 1.35698 * 107.55153 * 359.97438 * 17 4 3 20 20 N 1.40803 * 126.06464 * 179.97438 * 19 17 4 21 21 H 1.09006 * 109.46799 * 270.16418 * 1 2 3 22 22 H 1.09008 * 109.46991 * 30.15356 * 1 2 3 23 23 H 1.08999 * 109.47340 * 150.15978 * 1 2 3 24 24 H 1.08997 * 109.47201 * 29.97182 * 5 4 3 25 25 H 1.09001 * 109.46665 * 149.97864 * 5 4 3 26 26 H 1.09006 * 109.47241 * 300.00668 * 6 5 4 27 27 H 1.09008 * 109.46985 * 60.00107 * 6 5 4 28 28 H 1.08995 * 109.47139 * 300.00527 * 8 7 6 29 29 H 1.09004 * 109.46772 * 59.99922 * 8 7 6 30 30 H 0.96997 * 120.00211 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.46566 * 269.99722 * 18 17 4 32 32 H 1.08997 * 109.47069 * 29.99238 * 18 17 4 33 33 H 1.08999 * 109.47499 * 149.99735 * 18 17 4 34 34 H 0.97001 * 120.00393 * 0.02562 * 20 19 17 35 35 H 0.97005 * 119.99882 * 179.72643 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0612 0.0000 4 7 3.6090 0.6409 -0.0058 5 6 4.7871 1.5118 -0.0123 6 6 5.1909 1.8127 -1.4570 7 8 6.3397 2.6626 -1.4634 8 6 6.8010 3.0065 -2.7715 9 6 8.0095 3.8997 -2.6592 10 1 8.3878 4.1766 -1.6862 11 6 8.6323 4.3633 -3.7985 12 7 9.6874 5.1424 -3.7006 13 14 7.9785 3.8838 -5.4814 14 1 6.9725 4.8822 -5.9245 15 1 9.0990 3.8445 -6.4550 16 1 7.3440 2.5434 -5.4024 17 6 3.6185 -0.7187 -0.0037 18 6 4.8404 -1.6008 -0.0088 19 6 2.3276 -1.1369 0.0036 20 7 1.8898 -2.4752 0.0075 21 1 -0.3633 0.0029 1.0277 22 1 -0.3633 0.8887 -0.5163 23 1 -0.3634 -0.8914 -0.5113 24 1 4.5526 2.4442 0.5011 25 1 5.6106 1.0127 0.4986 26 1 5.4255 0.8802 -1.9705 27 1 4.3674 2.3116 -1.9681 28 1 7.0692 2.0991 -3.3125 29 1 6.0106 3.5300 -3.3095 30 1 10.1258 5.4682 -4.5021 31 1 5.1295 -1.8150 -1.0377 32 1 5.6586 -1.0910 0.4999 33 1 4.6169 -2.5343 0.5077 34 1 2.5374 -3.1974 0.0051 35 1 0.9406 -2.6750 0.0168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385293739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -2.686041 kcal Electronic energy + Delta-G solvation = -16602.497054 eV Core-core repulsion = 13829.044888 eV Total energy + Delta-G solvation = -2773.452166 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.17274 -38.93451 -35.95097 -34.94278 -34.56777 -32.27969 -30.74344 -30.02224 -27.55894 -27.13048 -24.06177 -23.72825 -21.01121 -20.63892 -19.13772 -18.13920 -17.18045 -16.98094 -16.75258 -16.71921 -16.09849 -15.66519 -14.96043 -14.66515 -14.47904 -14.40309 -14.08609 -13.71581 -13.29399 -13.22739 -13.06086 -12.98779 -12.74075 -12.52778 -12.37774 -11.87142 -11.52956 -11.51169 -11.46503 -10.98209 -10.53881 -10.01033 -8.41084 -7.99181 -6.49885 0.87035 1.31170 1.33436 1.40969 1.44498 1.96312 2.25810 2.91222 3.00996 3.25530 3.63823 3.81386 3.97077 4.04691 4.17817 4.21795 4.44384 4.46469 4.56031 4.62830 4.74538 4.76892 4.81794 4.89945 4.96371 5.07802 5.27630 5.35890 5.65981 5.82610 6.10973 6.51571 6.59955 6.77990 6.82890 7.14095 7.30899 8.75733 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039151 B = 0.004367 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.014490 B = 6409.497251 C = 6489.840828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.024 3.976 3 N -0.317 5.317 4 N -0.374 5.374 5 C 0.152 3.848 6 C 0.050 3.950 7 O -0.398 6.398 8 C 0.181 3.819 9 C -0.549 4.549 10 H 0.036 0.964 11 C 0.018 3.982 12 N -0.938 5.938 13 Si 0.952 3.048 14 H -0.261 1.261 15 H -0.269 1.269 16 H -0.248 1.248 17 C -0.011 4.011 18 C -0.079 4.079 19 C 0.053 3.947 20 N -0.861 5.861 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.017 0.983 29 H 0.009 0.991 30 H 0.275 0.725 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.403 0.597 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 -18.284 5.752 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.145 4.145 3 N -0.141 5.141 4 N -0.163 5.163 5 C 0.030 3.970 6 C -0.028 4.028 7 O -0.317 6.317 8 C 0.105 3.895 9 C -0.587 4.587 10 H 0.054 0.946 11 C -0.181 4.181 12 N -0.577 5.577 13 Si 0.773 3.227 14 H -0.186 1.186 15 H -0.194 1.194 16 H -0.171 1.171 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.057 4.057 20 N -0.411 5.411 21 H 0.104 0.896 22 H 0.088 0.912 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.134 0.866 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.232 0.768 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.224 -16.680 5.827 24.675 hybrid contribution 0.079 -0.728 -0.826 1.104 sum -17.146 -17.409 5.001 24.941 Atomic orbital electron populations 1.20206 0.84494 1.03970 1.03688 1.22668 0.98307 0.89340 1.04143 1.77167 0.87397 1.24121 1.25429 1.47959 1.04087 1.04161 1.60138 1.21204 0.84443 0.95323 0.96022 1.22718 0.88470 0.94188 0.97469 1.87790 1.45368 1.68099 1.30407 1.20374 0.93303 0.94463 0.81314 1.21115 1.12435 1.30756 0.94360 0.94605 1.25778 0.94583 0.93973 1.03773 1.70012 1.21639 1.34706 1.31353 0.85658 0.78936 0.80311 0.77763 1.18569 1.19405 1.17120 1.20872 0.97042 0.84346 1.11651 1.20355 0.92081 0.97945 1.03370 1.17373 0.90433 0.87657 1.10200 1.41395 1.09818 1.00565 1.89356 0.89596 0.91171 0.88751 0.88661 0.86558 0.92775 0.94218 0.96574 0.97359 0.91620 0.90560 0.91004 0.88288 0.76792 0.76534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.29 71.24 0.73 -0.34 16 2 C 0.02 0.61 7.22 43.18 0.31 0.92 16 3 N -0.32 -10.10 12.57 -47.16 -0.59 -10.70 16 4 N -0.37 -11.25 3.64 -333.62 -1.22 -12.46 16 5 C 0.15 4.65 6.63 86.38 0.57 5.22 16 6 C 0.05 1.81 6.26 71.98 0.45 2.26 16 7 O -0.40 -18.58 10.33 -148.98 -1.54 -20.11 16 8 C 0.18 9.21 4.76 71.23 0.34 9.55 16 9 C -0.55 -33.49 9.99 25.60 0.26 -33.23 16 10 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 11 C 0.02 1.04 5.47 84.65 0.46 1.50 16 12 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 13 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.25 -10.48 6.54 99.48 0.65 -9.82 16 17 C -0.01 -0.28 6.98 41.33 0.29 0.01 16 18 C -0.08 -1.44 9.95 71.24 0.71 -0.73 16 19 C 0.05 1.21 7.17 37.59 0.27 1.48 16 20 N -0.86 -12.25 9.19 -51.74 -0.48 -12.73 16 21 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 22 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 23 H 0.09 1.06 7.69 -2.39 -0.02 1.04 16 24 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.12 3.09 7.09 -2.39 -0.02 3.07 16 26 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 29 H 0.01 0.42 7.57 -2.39 -0.02 0.41 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.30 7.12 -2.39 -0.02 1.28 16 33 H 0.10 1.26 7.61 -2.39 -0.02 1.24 16 34 H 0.40 4.30 8.22 -92.71 -0.76 3.54 16 35 H 0.41 4.07 8.35 -92.70 -0.77 3.29 16 Total: -1.00 -74.35 298.70 2.27 -72.08 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -0.49 Total: 10.45 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.39 Total: -13.36 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -1.98 Total: -94.38 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.54 Total: -20.11 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -74.35 2.27 -72.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385293739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.398 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds