Wall clock time and date at job start Mon Mar 30 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99601 * 2 1 4 4 H 1.48505 * 109.46911 * 269.99806 * 3 2 1 5 5 H 1.48493 * 109.47407 * 29.99774 * 3 2 1 6 6 H 1.48502 * 109.47032 * 150.00342 * 3 2 1 7 7 C 1.37877 * 120.00547 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99731 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00304 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47032 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47030 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47016 * 179.97438 * 12 11 10 14 14 C 1.46898 * 110.99805 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47286 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47394 * 180.02562 * 15 14 13 17 17 N 1.34497 * 126.28727 * 270.02306 * 16 15 14 18 18 C 1.31126 * 105.61473 * 180.02562 * 17 16 15 19 19 O 1.33644 * 106.89983 * 359.97438 * 18 17 16 20 20 N 1.21297 * 109.80913 * 0.02562 * 19 18 17 21 21 H 0.96994 * 120.00138 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47183 * 59.99395 * 9 7 2 23 23 H 1.09005 * 109.47110 * 299.99638 * 9 7 2 24 24 H 1.08995 * 109.47195 * 59.99517 * 10 9 7 25 25 H 1.09005 * 109.46667 * 299.99748 * 10 9 7 26 26 H 1.08998 * 109.46935 * 60.00199 * 11 10 9 27 27 H 1.08992 * 109.46933 * 299.99522 * 11 10 9 28 28 H 1.09003 * 109.46695 * 60.00017 * 12 11 10 29 29 H 1.08997 * 109.47118 * 300.00242 * 12 11 10 30 30 H 1.00895 * 110.99500 * 56.04774 * 13 12 11 31 31 H 1.09005 * 109.47107 * 60.00108 * 14 13 12 32 32 H 1.08999 * 109.47530 * 300.00235 * 14 13 12 33 33 H 1.08992 * 109.46888 * 59.99730 * 15 14 13 34 34 H 1.09007 * 109.46638 * 300.00149 * 15 14 13 35 35 H 1.08005 * 126.55289 * 180.26876 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 6 6.0618 -4.0788 0.0015 13 7 7.5308 -4.0787 0.0008 14 6 8.0573 -5.4501 0.0019 15 6 9.5867 -5.4092 0.0018 16 6 10.1268 -6.8160 0.0023 17 7 10.4118 -7.5589 1.0866 18 6 10.8522 -8.7041 0.6241 19 8 10.8209 -8.6224 -0.7094 20 7 10.4030 -7.5342 -1.0449 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6798 0.8911 23 1 3.8753 -0.6803 -0.8889 24 1 3.6587 -3.1501 -0.8892 25 1 3.6580 -3.1504 0.8908 26 1 5.9150 -2.1225 0.8910 27 1 5.9149 -2.1225 -0.8890 28 1 5.6984 -4.5929 -0.8884 29 1 5.6985 -4.5923 0.8916 30 1 7.8926 -3.5522 0.7817 31 1 7.7074 -5.9743 -0.8875 32 1 7.7082 -5.9726 0.8925 33 1 9.9362 -4.8852 0.8913 34 1 9.9361 -4.8865 -0.8887 35 1 11.1738 -9.5532 1.2091 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395456370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:47 Heat of formation + Delta-G solvation = 47.956400 kcal Electronic energy + Delta-G solvation = -15749.470488 eV Core-core repulsion = 12978.214343 eV Total energy + Delta-G solvation = -2771.256145 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.00048 -37.50388 -36.26053 -34.57763 -33.20156 -32.20154 -30.58028 -28.19283 -24.97106 -24.46132 -23.28090 -22.00085 -21.21514 -19.98381 -18.45104 -18.21614 -16.64746 -16.47097 -15.94247 -15.21171 -14.67031 -14.40430 -14.06782 -13.54253 -13.08699 -12.82466 -12.70124 -12.48667 -11.97713 -11.79046 -11.63976 -11.58853 -11.38498 -11.09620 -10.76979 -10.54311 -10.43503 -9.86032 -9.66148 -9.47219 -9.12756 -8.54981 -8.50074 -6.00918 -3.98533 0.80401 1.84101 2.62967 3.26724 3.33815 3.40732 3.45215 3.71732 4.20315 4.48729 4.64533 4.72055 4.92913 5.12204 5.30610 5.32884 5.34624 5.41449 5.55656 5.66206 5.67691 5.80713 6.03363 6.11002 6.37773 6.67333 6.77135 6.85383 7.03473 7.27222 7.36775 7.49704 7.78714 7.84234 8.58326 9.04341 9.62051 11.12715 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.077888 B = 0.002800 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.404499 B = 9997.904721 C =10160.909464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.060 3.940 13 N -0.690 5.690 14 C 0.066 3.934 15 C -0.030 4.030 16 C 0.175 3.825 17 N -0.485 5.485 18 C 0.157 3.843 19 O 0.077 5.923 20 N -0.378 5.378 21 H 0.262 0.738 22 H 0.014 0.986 23 H 0.011 0.989 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.341 0.659 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.563 -16.214 1.948 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.069 4.069 13 N -0.321 5.321 14 C -0.065 4.065 15 C -0.069 4.069 16 C -0.098 4.098 17 N -0.218 5.218 18 C -0.084 4.084 19 O 0.018 5.982 20 N -0.085 5.085 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.029 0.971 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.159 0.841 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 23.224 -15.434 0.752 27.895 hybrid contribution 0.250 0.270 1.124 1.183 sum 23.474 -15.164 1.876 28.008 Atomic orbital electron populations 1.69920 1.06323 1.26829 1.51448 1.25057 0.94747 0.99244 0.94638 0.86749 0.80337 0.83527 0.78501 1.20306 1.21469 1.18991 1.21193 0.89710 0.94399 1.50489 0.91146 1.19571 0.96945 0.92461 0.96169 1.21420 0.91746 0.99835 1.00971 1.21675 0.97566 0.94360 1.02028 1.22070 0.85573 0.98727 1.00534 1.60482 1.08979 1.12458 1.50139 1.21825 0.92151 0.91206 1.01288 1.19966 0.95742 0.85731 1.05470 1.25899 1.00373 1.00466 0.83097 1.71912 1.16817 1.03071 1.30045 1.30525 0.96542 0.98955 0.82345 1.85327 1.59558 1.27901 1.25447 1.74702 1.16444 0.93385 1.23960 0.92805 0.96749 0.97055 0.92814 0.93019 0.92638 0.91545 0.91023 0.95202 0.84103 0.90698 0.94710 0.88599 0.87993 0.72165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.96 55.43 0.77 -27.72 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.16 16 11 C -0.12 -1.90 5.47 -26.73 -0.15 -2.04 16 12 C 0.06 0.81 5.68 -3.82 -0.02 0.79 16 13 N -0.69 -8.08 6.50 -113.78 -0.74 -8.82 16 14 C 0.07 0.69 5.67 -3.82 -0.02 0.67 16 15 C -0.03 -0.28 6.10 -27.89 -0.17 -0.45 16 16 C 0.17 1.78 7.47 -156.37 -1.17 0.61 16 17 N -0.49 -4.45 11.55 -13.72 -0.16 -4.61 16 18 C 0.16 0.85 13.40 51.98 0.70 1.55 16 19 O 0.08 0.61 11.31 18.10 0.20 0.81 16 20 N -0.38 -4.03 12.16 30.87 0.38 -3.65 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 23 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.34 3.56 8.73 -39.29 -0.34 3.22 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.26 -0.16 8.06 -52.48 -0.42 -0.59 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -34.10 301.10 -6.54 -40.64 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.35 Total: -3.48 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.51 Total: -15.22 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.25 Total: -44.80 kcal Atomic # 8 Polarization: 0.61 SS G_CDS: 0.20 Total: 0.81 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.10 -6.54 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395456370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.595 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds