Wall clock time and date at job start Mon Mar 30 2020 03:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00179 * 2 1 4 4 C 1.52999 * 109.47041 * 175.04122 * 3 2 1 5 5 C 1.50703 * 115.54832 * 65.11434 * 4 3 2 6 6 O 1.21292 * 119.99759 * 245.74586 * 5 4 3 7 7 N 1.34770 * 120.00518 * 65.74226 * 5 4 3 8 8 C 1.47070 * 136.05341 * 354.61948 * 7 5 4 9 9 C 1.53757 * 87.88892 * 152.96068 * 8 7 5 10 10 C 1.50703 * 114.09025 * 139.77847 * 9 8 7 11 11 H 1.07994 * 119.99821 * 266.55931 * 10 9 8 12 12 C 1.37874 * 119.99736 * 86.56035 * 10 9 8 13 13 N 1.31517 * 120.00347 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99838 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.47059 * 89.99699 * 14 12 10 16 16 H 1.48495 * 109.47418 * 209.99762 * 14 12 10 17 17 H 1.48501 * 109.47405 * 330.00210 * 14 12 10 18 18 C 1.47070 * 136.06009 * 174.98250 * 7 5 4 19 19 C 1.52997 * 117.50341 * 279.44130 * 4 3 2 20 20 C 1.52997 * 117.49838 * 210.77742 * 4 3 2 21 21 H 1.08998 * 109.47079 * 300.00825 * 1 2 3 22 22 H 1.09004 * 109.46498 * 60.00149 * 1 2 3 23 23 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46858 * 295.04308 * 3 2 1 25 25 H 1.09003 * 109.46891 * 55.04233 * 3 2 1 26 26 H 1.09002 * 113.47003 * 267.68772 * 8 7 5 27 27 H 1.08995 * 113.47027 * 38.12817 * 8 7 5 28 28 H 1.09005 * 114.39238 * 272.67514 * 9 8 7 29 29 H 0.96993 * 119.99886 * 180.02562 * 13 12 10 30 30 H 1.08996 * 113.47041 * 321.86630 * 18 7 5 31 31 H 1.09006 * 113.46527 * 92.25428 * 18 7 5 32 32 H 1.09005 * 117.49341 * 0.02562 * 19 4 3 33 33 H 1.08997 * 117.49994 * 145.01746 * 19 4 3 34 34 H 1.08998 * 117.49944 * 214.97754 * 20 4 3 35 35 H 1.09000 * 117.50167 * 359.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5306 1.1868 0.1247 5 6 4.2279 0.5229 -1.0347 6 8 4.7869 -0.5419 -0.8770 7 7 4.2305 1.1123 -2.2467 8 6 3.6097 2.3030 -2.8464 9 6 4.7901 2.3528 -3.8304 10 6 4.3994 2.7066 -5.2423 11 1 4.1905 1.9243 -5.9569 12 6 4.3087 4.0291 -5.6216 13 7 4.5636 4.9818 -4.7515 14 14 3.8251 4.4676 -7.3718 15 1 2.3485 4.5993 -7.4591 16 1 4.4602 5.7546 -7.7531 17 1 4.2821 3.3976 -8.2945 18 6 4.8501 0.8442 -3.5533 19 6 4.1091 0.9572 1.5223 20 6 4.2711 2.3181 0.8405 21 1 -0.3633 0.5140 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.7607 1.8143 -0.9311 25 1 1.6202 1.8769 0.8423 26 1 2.6528 2.0984 -3.3266 27 1 3.5689 3.1578 -2.1714 28 1 5.6550 2.9086 -3.4682 29 1 4.4994 5.9121 -5.0182 30 1 5.8661 0.4564 -3.4805 31 1 4.2205 0.2542 -4.2194 32 1 3.4065 0.8903 2.3530 33 1 4.9942 0.3263 1.6033 34 1 5.2629 2.5819 0.4733 35 1 3.6754 3.1472 1.2223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598030827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:22 Heat of formation + Delta-G solvation = -19.660008 kcal Electronic energy + Delta-G solvation = -17379.280212 eV Core-core repulsion = 14572.799248 eV Total energy + Delta-G solvation = -2806.480964 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.86048 -38.13181 -37.08752 -35.72199 -32.68428 -29.36277 -28.13661 -25.84070 -25.18277 -24.87406 -22.48433 -22.23637 -19.79918 -17.92550 -16.96820 -16.49076 -16.06555 -15.78427 -15.39304 -14.95027 -14.65263 -14.24736 -13.89914 -13.07038 -12.74100 -12.45918 -12.32137 -11.81963 -11.54900 -11.49690 -11.34628 -11.25080 -10.96196 -10.81745 -10.49991 -10.36449 -10.14478 -9.62536 -9.49829 -9.19970 -8.92575 -8.58104 -7.81726 -6.19324 -4.24536 3.12301 3.22640 3.30422 3.33361 3.44670 3.63491 4.13542 4.32415 4.75459 4.94212 5.00493 5.09790 5.12386 5.24681 5.33801 5.43884 5.63159 5.69222 5.71714 5.81345 5.99823 6.08857 6.21087 6.21587 6.32156 6.46082 6.57712 6.69966 6.83690 7.17260 7.55054 7.78728 8.18171 8.57615 8.79394 8.85213 9.42165 10.90448 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.006234 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.009090 B = 4490.129863 C = 4726.615358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.106 3.894 4 C -0.150 4.150 5 C 0.574 3.426 6 O -0.558 6.558 7 N -0.639 5.639 8 C 0.100 3.900 9 C 0.036 3.964 10 C -0.517 4.517 11 H 0.063 0.937 12 C 0.068 3.932 13 N -0.886 5.886 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.100 3.900 19 C -0.140 4.140 20 C -0.148 4.148 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 -2.506 9.316 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.029 3.971 4 C -0.153 4.153 5 C 0.363 3.637 6 O -0.438 6.438 7 N -0.372 5.372 8 C -0.022 4.022 9 C 0.016 3.984 10 C -0.555 4.555 11 H 0.082 0.918 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.022 4.022 19 C -0.177 4.177 20 C -0.185 4.185 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.580 -3.130 9.618 11.551 hybrid contribution -0.728 0.605 -0.932 1.329 sum -6.308 -2.525 8.685 11.027 Atomic orbital electron populations 1.22736 0.81232 1.02673 0.99864 1.87978 1.19338 1.27499 1.95358 1.21895 0.89422 0.84889 1.00916 1.21219 0.93966 1.05939 0.94223 1.18749 0.79615 0.83490 0.81856 1.90620 1.47408 1.21689 1.84052 1.49908 1.49697 1.29270 1.08355 1.23615 0.99819 0.84529 0.94266 1.20393 0.94222 0.88924 0.94823 1.20922 1.47410 0.92095 0.95042 0.91845 1.25020 0.94532 0.96449 0.97492 1.69950 1.47878 0.99997 1.34482 0.86544 0.78668 0.77992 0.84541 1.20545 1.21118 1.19668 1.23342 0.96703 1.01200 0.80918 1.22945 1.03092 0.98695 0.93004 1.23066 1.01786 0.91933 1.01714 0.94262 0.93963 0.89695 0.92042 0.92591 0.91082 0.92226 0.91323 0.92660 0.92542 0.91011 0.88146 0.87817 0.87748 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.19 10.63 -35.23 -0.37 -6.56 16 3 C 0.11 1.58 5.77 37.16 0.21 1.79 16 4 C -0.15 -2.52 1.99 -155.66 -0.31 -2.83 16 5 C 0.57 12.16 7.26 -10.99 -0.08 12.08 16 6 O -0.56 -13.55 17.48 5.55 0.10 -13.46 16 7 N -0.64 -13.63 3.69 -185.02 -0.68 -14.32 16 8 C 0.10 2.13 7.16 -8.36 -0.06 2.07 16 9 C 0.04 0.84 3.80 -91.12 -0.35 0.49 16 10 C -0.52 -13.15 8.82 -34.44 -0.30 -13.45 16 11 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 12 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -23.88 13.26 55.43 0.74 -23.14 16 14 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 C 0.10 2.17 8.18 -8.49 -0.07 2.10 16 19 C -0.14 -1.98 9.78 -26.69 -0.26 -2.24 16 20 C -0.15 -2.03 9.93 -26.69 -0.26 -2.30 16 21 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.95 7.28 -51.93 -0.38 0.57 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.56 8.00 -51.93 -0.42 1.15 16 34 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -30.23 303.99 -6.53 -36.76 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.40 Total: 0.32 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.47 Total: 0.88 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.05 Total: -37.46 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.28 Total: -20.02 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.23 -6.53 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.100 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds