Wall clock time and date at job start Mon Mar 30 2020 03:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00179 * 2 1 4 4 C 1.52999 * 109.47041 * 175.04122 * 3 2 1 5 5 C 1.50703 * 115.54832 * 65.11434 * 4 3 2 6 6 O 1.21292 * 119.99759 * 245.74586 * 5 4 3 7 7 N 1.34770 * 120.00518 * 65.74226 * 5 4 3 8 8 C 1.47070 * 136.05341 * 354.61948 * 7 5 4 9 9 C 1.53757 * 87.88892 * 152.96068 * 8 7 5 10 10 C 1.50703 * 114.09025 * 139.77847 * 9 8 7 11 11 H 1.07994 * 119.99821 * 266.55931 * 10 9 8 12 12 C 1.37874 * 119.99736 * 86.56035 * 10 9 8 13 13 N 1.31517 * 120.00347 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99838 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.47059 * 89.99699 * 14 12 10 16 16 H 1.48495 * 109.47418 * 209.99762 * 14 12 10 17 17 H 1.48501 * 109.47405 * 330.00210 * 14 12 10 18 18 C 1.47070 * 136.06009 * 174.98250 * 7 5 4 19 19 C 1.52997 * 117.50341 * 279.44130 * 4 3 2 20 20 C 1.52997 * 117.49838 * 210.77742 * 4 3 2 21 21 H 1.08998 * 109.47079 * 300.00825 * 1 2 3 22 22 H 1.09004 * 109.46498 * 60.00149 * 1 2 3 23 23 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46858 * 295.04308 * 3 2 1 25 25 H 1.09003 * 109.46891 * 55.04233 * 3 2 1 26 26 H 1.09002 * 113.47003 * 267.68772 * 8 7 5 27 27 H 1.08995 * 113.47027 * 38.12817 * 8 7 5 28 28 H 1.09005 * 114.39238 * 272.67514 * 9 8 7 29 29 H 0.96993 * 119.99886 * 180.02562 * 13 12 10 30 30 H 1.08996 * 113.47041 * 321.86630 * 18 7 5 31 31 H 1.09006 * 113.46527 * 92.25428 * 18 7 5 32 32 H 1.09005 * 117.49341 * 0.02562 * 19 4 3 33 33 H 1.08997 * 117.49994 * 145.01746 * 19 4 3 34 34 H 1.08998 * 117.49944 * 214.97754 * 20 4 3 35 35 H 1.09000 * 117.50167 * 359.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5306 1.1868 0.1247 5 6 4.2279 0.5229 -1.0347 6 8 4.7869 -0.5419 -0.8770 7 7 4.2305 1.1123 -2.2467 8 6 3.6097 2.3030 -2.8464 9 6 4.7901 2.3528 -3.8304 10 6 4.3994 2.7066 -5.2423 11 1 4.1905 1.9243 -5.9569 12 6 4.3087 4.0291 -5.6216 13 7 4.5636 4.9818 -4.7515 14 14 3.8251 4.4676 -7.3718 15 1 2.3485 4.5993 -7.4591 16 1 4.4602 5.7546 -7.7531 17 1 4.2821 3.3976 -8.2945 18 6 4.8501 0.8442 -3.5533 19 6 4.1091 0.9572 1.5223 20 6 4.2711 2.3181 0.8405 21 1 -0.3633 0.5140 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.7607 1.8143 -0.9311 25 1 1.6202 1.8769 0.8423 26 1 2.6528 2.0984 -3.3266 27 1 3.5689 3.1578 -2.1714 28 1 5.6550 2.9086 -3.4682 29 1 4.4994 5.9121 -5.0182 30 1 5.8661 0.4564 -3.4805 31 1 4.2205 0.2542 -4.2194 32 1 3.4065 0.8903 2.3530 33 1 4.9942 0.3263 1.6033 34 1 5.2629 2.5819 0.4733 35 1 3.6754 3.1472 1.2223 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598030827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:22 Heat of formation + Delta-G solvation = -39.089087 kcal Electronic energy + Delta-G solvation = -17380.122720 eV Core-core repulsion = 14572.799248 eV Total energy + Delta-G solvation = -2807.323472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42856 -39.56248 -38.51957 -37.07065 -34.64416 -31.10415 -29.23850 -27.36748 -26.78759 -26.37180 -23.97795 -23.38150 -21.50318 -19.50513 -18.73644 -18.00495 -17.30155 -17.14258 -16.76578 -16.49649 -16.18896 -15.84965 -15.11650 -14.76008 -14.23151 -14.11917 -13.43823 -13.29962 -13.26252 -13.07562 -12.76760 -12.61661 -12.52330 -12.35768 -12.19978 -11.67652 -11.42994 -11.18989 -11.07408 -10.76337 -10.63038 -10.45683 -9.58797 -8.16516 -6.27531 1.47344 1.49847 1.54151 1.59212 1.95474 2.41562 2.46681 3.02920 3.13285 3.46291 3.66828 3.87188 3.96725 4.21345 4.30934 4.39425 4.46453 4.48987 4.53084 4.60567 4.66371 4.66815 4.71898 4.81471 4.83168 4.91694 4.98109 5.08643 5.14486 5.58412 5.81050 6.17873 6.23181 6.80265 6.88917 7.15951 7.42307 8.93459 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.006234 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.009090 B = 4490.129863 C = 4726.615358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.109 3.891 4 C -0.178 4.178 5 C 0.566 3.434 6 O -0.598 6.598 7 N -0.641 5.641 8 C 0.119 3.881 9 C 0.027 3.973 10 C -0.530 4.530 11 H 0.064 0.936 12 C 0.024 3.976 13 N -0.916 5.916 14 Si 0.957 3.043 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.269 1.269 18 C 0.102 3.898 19 C -0.128 4.128 20 C -0.130 4.130 21 H 0.064 0.936 22 H 0.044 0.956 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -1.857 10.027 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.033 3.967 4 C -0.181 4.181 5 C 0.357 3.643 6 O -0.480 6.480 7 N -0.373 5.373 8 C -0.003 4.003 9 C 0.008 3.992 10 C -0.568 4.568 11 H 0.082 0.918 12 C -0.176 4.176 13 N -0.554 5.554 14 Si 0.783 3.217 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.021 4.021 19 C -0.166 4.166 20 C -0.167 4.167 21 H 0.082 0.918 22 H 0.062 0.938 23 H 0.112 0.888 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.149 0.851 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.086 -2.480 10.330 12.770 hybrid contribution -0.223 0.349 -1.139 1.212 sum -7.309 -2.131 9.191 11.935 Atomic orbital electron populations 1.22949 0.79119 1.03812 1.01149 1.87932 1.21775 1.28404 1.95606 1.21928 0.88021 0.84851 1.01913 1.21313 0.95152 1.08262 0.93419 1.19646 0.78952 0.83141 0.82550 1.90585 1.49212 1.23546 1.84682 1.49965 1.49592 1.29239 1.08545 1.23338 0.98821 0.84644 0.93515 1.20260 0.94329 0.89781 0.94815 1.21186 1.47359 0.92405 0.95882 0.91792 1.25722 0.94508 0.96341 1.01056 1.70045 1.48835 1.00278 1.36192 0.85565 0.78505 0.77533 0.80115 1.19825 1.21088 1.19324 1.23260 0.97006 1.00082 0.81736 1.23051 1.02767 0.98422 0.92321 1.23195 1.01145 0.92482 0.99907 0.91790 0.93773 0.88781 0.93156 0.88885 0.90738 0.91716 0.93917 0.92553 0.92660 0.90346 0.85050 0.89443 0.89083 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.42 -12.77 10.63 -148.98 -1.58 -14.36 16 3 C 0.11 3.01 5.77 71.98 0.42 3.43 16 4 C -0.18 -5.70 1.99 -52.93 -0.11 -5.81 16 5 C 0.57 24.03 7.26 87.66 0.64 24.67 16 6 O -0.60 -29.55 17.48 -3.07 -0.05 -29.60 16 7 N -0.64 -27.49 3.69 -857.67 -3.16 -30.65 16 8 C 0.12 5.06 7.16 83.27 0.60 5.65 16 9 C 0.03 1.31 3.80 -11.12 -0.04 1.27 16 10 C -0.53 -27.02 8.82 25.60 0.23 -26.80 16 11 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 12 C 0.02 1.25 5.46 84.65 0.46 1.71 16 13 N -0.92 -49.32 13.26 21.45 0.28 -49.03 16 14 Si 0.96 40.49 29.54 68.60 2.03 42.52 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 C 0.10 4.46 8.18 83.19 0.68 5.14 16 19 C -0.13 -3.34 9.78 30.62 0.30 -3.04 16 20 C -0.13 -3.27 9.93 30.62 0.30 -2.97 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.47 7.28 -2.39 -0.02 1.45 16 25 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 26 H 0.07 3.11 8.10 -2.39 -0.02 3.09 16 27 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.04 2.25 8.11 -2.38 -0.02 2.23 16 29 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 3.32 8.10 -2.38 -0.02 3.30 16 32 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.09 2.56 8.00 -2.39 -0.02 2.55 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -65.00 303.99 3.29 -61.72 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.06 Total: 14.38 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 4.72 Total: 5.03 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.88 Total: -79.68 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.64 Total: -43.96 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -65.00 3.29 -61.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.626 kcal (2) G-P(sol) polarization free energy of solvation -65.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds