Wall clock time and date at job start Mon Mar 30 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 C 1.53007 * 109.46813 * 120.00060 * 2 1 3 5 5 C 1.50702 * 109.46911 * 174.99820 * 4 2 1 6 6 N 1.31135 * 126.54894 * 90.24817 * 5 4 2 7 7 C 1.34503 * 105.60996 * 180.12393 * 6 5 4 8 8 C 1.50700 * 126.28512 * 179.90645 * 7 6 5 9 9 N 1.46503 * 109.46852 * 269.71099 * 8 7 6 10 10 C 1.46498 * 119.99758 * 269.99630 * 9 8 7 11 11 C 1.36936 * 119.99901 * 90.00253 * 9 8 7 12 12 H 1.08002 * 120.00008 * 339.14746 * 11 9 8 13 13 C 1.38814 * 119.99890 * 159.42141 * 11 9 8 14 14 N 1.31622 * 119.99766 * 347.70521 * 13 11 9 15 15 Si 1.86799 * 120.00051 * 167.70357 * 13 11 9 16 16 H 1.48499 * 109.46798 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46948 * 120.00006 * 15 13 11 18 18 H 1.48502 * 109.46846 * 240.00354 * 15 13 11 19 19 N 1.29950 * 107.42434 * 359.64188 * 7 6 5 20 20 O 1.21298 * 110.24928 * 0.22617 * 19 7 6 21 21 H 1.09003 * 109.46824 * 300.00753 * 1 2 3 22 22 H 1.09004 * 109.46993 * 60.00168 * 1 2 3 23 23 H 1.08991 * 109.47389 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46824 * 239.99247 * 2 1 3 25 25 H 1.09000 * 109.46915 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46961 * 299.99851 * 3 2 1 27 27 H 1.08992 * 109.47343 * 59.99762 * 3 2 1 28 28 H 1.08995 * 109.47086 * 54.99520 * 4 2 1 29 29 H 1.09003 * 109.46522 * 294.99370 * 4 2 1 30 30 H 1.08997 * 109.46789 * 149.70969 * 8 7 6 31 31 H 1.08997 * 109.47013 * 29.70867 * 8 7 6 32 32 H 1.09000 * 109.47295 * 264.89966 * 10 9 8 33 33 H 1.09001 * 109.46807 * 24.90455 * 10 9 8 34 34 H 1.09004 * 109.46500 * 144.89802 * 10 9 8 35 35 H 0.96997 * 119.99531 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8295 1.1890 6 7 4.4068 0.0364 1.6599 7 6 5.6192 -0.4731 1.3780 8 6 6.9490 0.1514 1.7134 9 7 7.3788 1.0091 0.6062 10 6 8.1906 0.4527 -0.4789 11 6 7.0219 2.3310 0.5857 12 1 6.1764 2.6711 1.1653 13 6 7.7433 3.2329 -0.1844 14 7 8.9020 2.8794 -0.6990 15 14 7.0695 4.9480 -0.4906 16 1 5.7595 5.0945 0.1933 17 1 8.0209 5.9559 0.0422 18 1 6.8926 5.1570 -1.9502 19 7 5.4332 -1.6055 0.7683 20 8 4.2468 -1.8286 0.6498 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5140 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6053 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 7.6887 -0.6330 1.8737 31 1 6.8514 0.7494 2.6195 32 1 9.2455 0.6345 -0.2736 33 1 8.0142 -0.6206 -0.5510 34 1 7.9159 0.9300 -1.4196 35 1 9.4063 3.5098 -1.2368 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685978617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:03 Heat of formation + Delta-G solvation = 76.651920 kcal Electronic energy + Delta-G solvation = -17417.557072 eV Core-core repulsion = 14647.545258 eV Total energy + Delta-G solvation = -2770.011814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.94354 -36.84286 -36.14827 -34.57226 -32.21464 -30.96282 -27.77271 -27.18050 -27.02144 -25.80701 -23.17180 -21.96435 -20.84836 -19.84080 -17.53022 -16.89357 -16.65151 -15.59021 -14.91250 -14.50973 -14.11651 -13.69931 -13.54993 -13.26742 -13.03076 -12.36645 -12.05422 -11.85596 -11.63147 -11.28505 -11.27916 -11.08831 -10.93998 -10.82476 -10.77365 -10.65837 -10.46142 -10.27265 -9.98405 -9.92081 -9.27383 -8.59775 -6.92549 -5.76008 -3.22941 1.71248 2.92218 3.27907 3.37204 3.44388 3.48038 4.22039 4.49709 4.71853 4.75952 4.87116 4.96577 5.39801 5.41476 5.44932 5.56132 5.61049 5.62387 5.77387 5.84633 5.90382 6.08393 6.23619 6.25101 6.40712 6.50217 6.54079 6.68509 6.77706 7.37774 7.69802 7.83567 8.32457 8.84106 9.18834 9.78844 10.25718 11.29415 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.007770 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.128334 B = 3602.682222 C = 4543.742589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.017 4.017 5 C 0.155 3.845 6 N -0.464 5.464 7 C 0.174 3.826 8 C 0.228 3.772 9 N -0.585 5.585 10 C 0.161 3.839 11 C -0.256 4.256 12 H 0.075 0.925 13 C 0.003 3.997 14 N -0.908 5.908 15 Si 0.907 3.093 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.290 1.290 19 N -0.395 5.395 20 O 0.059 5.941 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.000 1.000 34 H 0.045 0.955 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.427 -7.071 2.860 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.210 4.210 4 C -0.056 4.056 5 C -0.066 4.066 6 N -0.198 5.198 7 C -0.103 4.103 8 C 0.097 3.903 9 N -0.306 5.306 10 C 0.016 3.984 11 C -0.385 4.385 12 H 0.093 0.907 13 C -0.195 4.195 14 N -0.553 5.553 15 Si 0.736 3.264 16 H -0.201 1.201 17 H -0.216 1.216 18 H -0.216 1.216 19 N -0.106 5.106 20 O 0.004 5.996 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.473 -7.091 2.666 15.456 hybrid contribution -0.449 0.936 -0.435 1.126 sum -13.922 -6.155 2.231 15.385 Atomic orbital electron populations 1.21811 0.94142 1.01840 1.02320 1.21129 0.96037 0.97303 0.96828 1.21903 1.02769 0.94618 1.01704 1.20233 0.81296 1.03073 1.01029 1.28690 0.98866 0.85036 0.94026 1.71934 0.99208 1.26726 1.21949 1.28112 0.98565 0.88455 0.95147 1.19172 0.84823 0.93638 0.92690 1.43957 1.59422 1.06252 1.20977 1.20901 0.95025 0.91443 0.90998 1.19335 1.09434 0.83011 1.26748 0.90710 1.24999 0.95579 0.98107 1.00791 1.70109 1.12306 1.34949 1.37891 0.86145 0.78458 0.84094 0.77679 1.20104 1.21559 1.21631 1.74588 0.94342 1.20296 1.21411 1.85210 1.12880 1.42023 1.59463 0.92310 0.92191 0.92480 0.90672 0.91418 0.92720 0.92312 0.88693 0.87712 0.91499 0.90068 0.94539 0.98144 0.93633 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.19 37.16 0.34 -0.79 16 2 C -0.09 -1.01 2.91 -90.62 -0.26 -1.27 16 3 C -0.15 -2.05 9.01 37.16 0.33 -1.71 16 4 C -0.02 -0.19 5.32 -27.88 -0.15 -0.33 16 5 C 0.16 2.51 6.96 -13.05 -0.09 2.42 16 6 N -0.46 -9.14 10.89 -9.87 -0.11 -9.25 16 7 C 0.17 3.70 7.80 -156.36 -1.22 2.48 16 8 C 0.23 5.06 6.27 -5.19 -0.03 5.03 16 9 N -0.58 -15.35 2.91 -182.50 -0.53 -15.88 16 10 C 0.16 4.17 8.96 59.85 0.54 4.71 16 11 C -0.26 -7.23 9.69 -15.06 -0.15 -7.37 16 12 H 0.08 2.11 7.86 -52.49 -0.41 1.70 16 13 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 14 N -0.91 -26.82 10.53 55.49 0.58 -26.24 16 15 Si 0.91 22.32 29.57 -169.99 -5.03 17.29 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 N -0.40 -8.14 12.16 30.90 0.38 -7.76 16 20 O 0.06 1.06 11.31 18.12 0.20 1.26 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.19 6.86 -51.93 -0.36 0.83 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.08 1.74 8.04 -51.93 -0.42 1.32 16 32 H 0.04 0.99 7.41 -51.93 -0.38 0.61 16 33 H 0.00 0.00 8.03 -51.93 -0.42 -0.42 16 34 H 0.04 1.27 7.15 -51.93 -0.37 0.90 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 296.78 15.07 4.47 4.47 Total: -1.00 -31.85 296.78 -6.10 -37.95 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -5.30 Total: -5.01 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.78 Total: 3.15 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.32 Total: -59.13 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.85 -6.10 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685978617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.604 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds