Wall clock time and date at job start Mon Mar 30 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 C 1.53007 * 109.46813 * 120.00060 * 2 1 3 5 5 C 1.50702 * 109.46911 * 174.99820 * 4 2 1 6 6 N 1.31135 * 126.54894 * 90.24817 * 5 4 2 7 7 C 1.34503 * 105.60996 * 180.12393 * 6 5 4 8 8 C 1.50700 * 126.28512 * 179.90645 * 7 6 5 9 9 N 1.46503 * 109.46852 * 269.71099 * 8 7 6 10 10 C 1.46498 * 119.99758 * 269.99630 * 9 8 7 11 11 C 1.36936 * 119.99901 * 90.00253 * 9 8 7 12 12 H 1.08002 * 120.00008 * 339.14746 * 11 9 8 13 13 C 1.38814 * 119.99890 * 159.42141 * 11 9 8 14 14 N 1.31622 * 119.99766 * 347.70521 * 13 11 9 15 15 Si 1.86799 * 120.00051 * 167.70357 * 13 11 9 16 16 H 1.48499 * 109.46798 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46948 * 120.00006 * 15 13 11 18 18 H 1.48502 * 109.46846 * 240.00354 * 15 13 11 19 19 N 1.29950 * 107.42434 * 359.64188 * 7 6 5 20 20 O 1.21298 * 110.24928 * 0.22617 * 19 7 6 21 21 H 1.09003 * 109.46824 * 300.00753 * 1 2 3 22 22 H 1.09004 * 109.46993 * 60.00168 * 1 2 3 23 23 H 1.08991 * 109.47389 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46824 * 239.99247 * 2 1 3 25 25 H 1.09000 * 109.46915 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46961 * 299.99851 * 3 2 1 27 27 H 1.08992 * 109.47343 * 59.99762 * 3 2 1 28 28 H 1.08995 * 109.47086 * 54.99520 * 4 2 1 29 29 H 1.09003 * 109.46522 * 294.99370 * 4 2 1 30 30 H 1.08997 * 109.46789 * 149.70969 * 8 7 6 31 31 H 1.08997 * 109.47013 * 29.70867 * 8 7 6 32 32 H 1.09000 * 109.47295 * 264.89966 * 10 9 8 33 33 H 1.09001 * 109.46807 * 24.90455 * 10 9 8 34 34 H 1.09004 * 109.46500 * 144.89802 * 10 9 8 35 35 H 0.96997 * 119.99531 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8295 1.1890 6 7 4.4068 0.0364 1.6599 7 6 5.6192 -0.4731 1.3780 8 6 6.9490 0.1514 1.7134 9 7 7.3788 1.0091 0.6062 10 6 8.1906 0.4527 -0.4789 11 6 7.0219 2.3310 0.5857 12 1 6.1764 2.6711 1.1653 13 6 7.7433 3.2329 -0.1844 14 7 8.9020 2.8794 -0.6990 15 14 7.0695 4.9480 -0.4906 16 1 5.7595 5.0945 0.1933 17 1 8.0209 5.9559 0.0422 18 1 6.8926 5.1570 -1.9502 19 7 5.4332 -1.6055 0.7683 20 8 4.2468 -1.8286 0.6498 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5140 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6053 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 7.6887 -0.6330 1.8737 31 1 6.8514 0.7494 2.6195 32 1 9.2455 0.6345 -0.2736 33 1 8.0142 -0.6206 -0.5510 34 1 7.9159 0.9300 -1.4196 35 1 9.4063 3.5098 -1.2368 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685978617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:03 Heat of formation + Delta-G solvation = 55.702934 kcal Electronic energy + Delta-G solvation = -17418.465488 eV Core-core repulsion = 14647.545258 eV Total energy + Delta-G solvation = -2770.920230 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.45512 -38.03530 -37.78726 -36.21521 -33.82925 -32.83179 -29.08155 -28.72593 -27.97970 -27.92474 -24.82725 -23.62386 -22.33928 -20.97405 -19.04199 -18.79520 -18.30546 -16.99034 -16.66175 -15.82785 -15.50559 -15.31168 -15.07834 -15.01256 -14.17137 -13.74093 -13.31882 -13.24484 -12.99346 -12.98415 -12.76530 -12.73151 -12.46896 -12.39792 -12.15060 -12.07965 -11.96070 -11.88032 -11.75903 -11.60355 -10.81236 -10.68951 -9.04406 -7.92363 -5.42330 0.31907 1.34702 1.41746 1.43231 1.54443 2.03541 2.45414 2.86392 3.18509 3.32840 3.63894 3.85659 3.95648 3.99409 4.31218 4.51813 4.60361 4.67249 4.70717 4.75034 4.78087 4.84953 4.93135 5.02354 5.12326 5.19079 5.27002 5.27845 5.43175 5.49618 5.53155 5.61286 6.19957 7.02942 7.37337 7.69056 8.13107 9.12222 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.007770 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.128334 B = 3602.682222 C = 4543.742589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.017 4.017 5 C 0.175 3.825 6 N -0.494 5.494 7 C 0.156 3.844 8 C 0.230 3.770 9 N -0.602 5.602 10 C 0.180 3.820 11 C -0.262 4.262 12 H 0.069 0.931 13 C -0.049 4.049 14 N -0.937 5.937 15 Si 0.970 3.030 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.290 1.290 19 N -0.410 5.410 20 O 0.067 5.933 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.067 -7.574 3.311 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.056 4.056 5 C -0.045 4.045 6 N -0.228 5.228 7 C -0.120 4.120 8 C 0.100 3.900 9 N -0.324 5.324 10 C 0.036 3.964 11 C -0.392 4.392 12 H 0.087 0.913 13 C -0.244 4.244 14 N -0.583 5.583 15 Si 0.798 3.202 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.217 1.217 19 N -0.121 5.121 20 O 0.010 5.990 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.130 -7.607 3.149 18.110 hybrid contribution 0.262 1.017 -0.549 1.185 sum -15.869 -6.590 2.600 17.378 Atomic orbital electron populations 1.21760 0.91191 1.03462 1.02942 1.21114 0.98264 0.95044 0.96397 1.21902 0.99589 0.97117 1.02390 1.20685 0.77419 1.05801 1.01659 1.29720 1.00499 0.83144 0.91152 1.71903 0.99237 1.27926 1.23699 1.27653 0.98683 0.89214 0.96423 1.19200 0.85736 0.93554 0.91515 1.44090 1.59929 1.06353 1.22069 1.20578 0.93945 0.92086 0.89830 1.19491 1.09049 0.84118 1.26536 0.91279 1.25769 0.95921 1.01760 1.00914 1.70247 1.13343 1.36063 1.38632 0.85161 0.78082 0.79736 0.77252 1.19287 1.21088 1.21698 1.74546 0.95788 1.20255 1.21500 1.85169 1.12136 1.42339 1.59338 0.91283 0.92065 0.90367 0.91501 0.96116 0.92254 0.91535 0.84626 0.86075 0.90019 0.89854 0.96301 0.96203 0.96456 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.94 16 2 C -0.09 -1.66 2.91 -10.79 -0.03 -1.69 16 3 C -0.15 -3.92 9.01 71.98 0.65 -3.27 16 4 C -0.02 -0.31 5.32 29.85 0.16 -0.15 16 5 C 0.18 5.36 6.96 88.38 0.62 5.97 16 6 N -0.49 -19.19 10.89 -303.19 -3.30 -22.49 16 7 C 0.16 6.62 7.80 138.46 1.08 7.70 16 8 C 0.23 10.25 6.27 85.63 0.54 10.79 16 9 N -0.60 -32.12 2.91 -731.30 -2.13 -34.25 16 10 C 0.18 9.58 8.96 127.77 1.15 10.72 16 11 C -0.26 -15.04 9.69 84.03 0.81 -14.22 16 12 H 0.07 3.96 7.86 -2.91 -0.02 3.94 16 13 C -0.05 -2.80 5.12 84.86 0.43 -2.37 16 14 N -0.94 -56.46 10.53 21.65 0.23 -56.23 16 15 Si 0.97 46.39 29.57 68.60 2.03 48.42 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 19 N -0.41 -16.61 12.16 -60.31 -0.73 -17.34 16 20 O 0.07 2.29 11.31 74.89 0.85 3.14 16 21 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.02 0.71 6.86 -2.39 -0.02 0.69 16 26 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 3.33 8.07 -2.39 -0.02 3.31 16 31 H 0.08 3.61 8.04 -2.39 -0.02 3.59 16 32 H 0.02 1.05 7.41 -2.39 -0.02 1.03 16 33 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 34 H 0.02 0.97 7.15 -2.38 -0.02 0.96 16 35 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -69.79 296.78 4.06 -65.72 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.06 Total: 0.50 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 6.06 Total: 12.54 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -5.94 Total: -130.32 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.85 Total: 3.14 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -69.79 4.06 -65.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685978617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.424 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds