Wall clock time and date at job start Mon Mar 30 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00532 * 2 1 4 4 H 1.09008 * 115.55829 * 355.69454 * 3 2 1 5 5 C 1.53000 * 117.50163 * 141.37553 * 3 2 1 6 6 C 1.52999 * 60.00008 * 107.49785 * 5 3 2 7 7 H 1.09002 * 117.49569 * 252.49323 * 6 5 3 8 8 C 1.50691 * 117.49943 * 107.49158 * 6 5 3 9 9 O 1.21286 * 120.00125 * 291.39074 * 8 6 5 10 10 N 1.34777 * 119.99908 * 111.39728 * 8 6 5 11 11 C 1.46504 * 119.99885 * 180.02562 * 10 8 6 12 12 C 1.50707 * 109.46826 * 269.99612 * 11 10 8 13 13 H 1.07998 * 120.00192 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99567 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99366 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00534 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47272 * 90.00102 * 16 14 12 18 18 H 1.48505 * 109.47380 * 210.00351 * 16 14 12 19 19 H 1.48501 * 109.46908 * 329.99954 * 16 14 12 20 20 C 1.46501 * 120.00192 * 359.97438 * 10 8 6 21 21 C 1.53002 * 117.49747 * 240.00561 * 20 10 8 22 22 C 1.53000 * 60.02940 * 252.51859 * 21 20 10 23 23 H 1.08998 * 109.46857 * 299.99520 * 1 2 3 24 24 H 1.09002 * 109.47244 * 59.99569 * 1 2 3 25 25 H 1.08995 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.09003 * 117.49689 * 0.02562 * 5 3 2 27 27 H 1.09002 * 117.52347 * 214.97724 * 5 3 2 28 28 H 1.08997 * 109.46968 * 29.99156 * 11 10 8 29 29 H 1.09001 * 109.47319 * 149.99570 * 11 10 8 30 30 H 0.97006 * 119.99315 * 179.97438 * 15 14 12 31 31 H 1.09000 * 115.55824 * 25.68931 * 20 10 8 32 32 H 1.09002 * 117.49918 * 145.01894 * 21 20 10 33 33 H 1.09002 * 117.49754 * 0.02562 * 21 20 10 34 34 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 35 35 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3058 2.1340 -0.0738 5 6 3.2663 1.5195 0.8471 6 6 3.3713 1.4728 -0.6785 7 1 3.8237 0.5873 -1.1250 8 6 3.6354 2.7704 -1.3978 9 8 2.7841 3.6340 -1.4229 10 7 4.8174 2.9712 -2.0134 11 6 5.0743 4.2330 -2.7122 12 6 4.6337 4.1106 -4.1482 13 1 4.2056 3.1854 -4.5048 14 6 4.7781 5.1794 -5.0071 15 7 4.3941 5.0724 -6.2604 16 14 5.5192 6.7795 -4.3907 17 1 6.9918 6.7481 -4.5795 18 1 4.9463 7.9170 -5.1544 19 1 5.2085 6.9455 -2.9481 20 6 5.8458 1.9283 -1.9828 21 6 7.1909 2.2811 -1.3446 22 6 7.0819 2.1287 -2.8631 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.6494 0.6644 1.4041 27 1 3.3886 2.4887 1.3306 28 1 4.5179 5.0359 -2.2287 29 1 6.1404 4.4573 -2.6771 30 1 4.4954 5.8246 -6.8645 31 1 5.4792 0.9100 -1.8537 32 1 7.7092 1.4949 -0.7957 33 1 7.3105 3.2891 -0.9472 34 1 7.1295 3.0364 -3.4647 35 1 7.5289 1.2423 -3.3133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689940880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:11 Heat of formation + Delta-G solvation = -38.064875 kcal Electronic energy + Delta-G solvation = -17294.037429 eV Core-core repulsion = 14486.758371 eV Total energy + Delta-G solvation = -2807.279059 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.22318 -39.29372 -38.22507 -35.85088 -35.14289 -33.89294 -30.41818 -27.61643 -25.88554 -24.00587 -23.27036 -23.04855 -22.66352 -19.64762 -19.16734 -18.92241 -17.43473 -17.23504 -16.44367 -16.24700 -15.92604 -15.58215 -15.42908 -15.00089 -14.66098 -13.83289 -13.77219 -13.65844 -13.31913 -12.76600 -12.57277 -12.43056 -12.36700 -12.28862 -12.16261 -11.86231 -11.63277 -11.60635 -11.41405 -10.84649 -10.69144 -10.22019 -9.26783 -8.36054 -6.40880 1.28132 1.32555 1.42963 1.50469 2.01461 2.28057 2.60226 2.82585 2.97201 3.09186 3.58906 3.72268 3.89512 3.99565 4.06143 4.12278 4.20750 4.44923 4.53354 4.61205 4.63896 4.78766 4.82656 4.84072 4.87471 4.95683 5.02674 5.19648 5.36849 5.41299 5.55738 6.13652 6.20992 6.59461 6.63669 7.17378 7.32996 8.81093 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025128 B = 0.007043 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.016097 B = 3974.813363 C = 4542.578561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.370 6.370 3 C 0.040 3.960 4 H 0.109 0.891 5 C -0.122 4.122 6 C -0.197 4.197 7 H 0.142 0.858 8 C 0.532 3.468 9 O -0.594 6.594 10 N -0.568 5.568 11 C 0.226 3.774 12 C -0.529 4.529 13 H 0.026 0.974 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.943 3.057 17 H -0.250 1.250 18 H -0.279 1.279 19 H -0.257 1.257 20 C 0.052 3.948 21 C -0.166 4.166 22 C -0.189 4.189 23 H 0.059 0.941 24 H 0.037 0.963 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.107 0.893 28 H 0.019 0.981 29 H 0.047 0.953 30 H 0.269 0.731 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -9.792 15.681 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.289 6.289 3 C -0.019 4.019 4 H 0.127 0.873 5 C -0.159 4.159 6 C -0.218 4.218 7 H 0.160 0.840 8 C 0.322 3.678 9 O -0.476 6.476 10 N -0.296 5.296 11 C 0.104 3.896 12 C -0.567 4.567 13 H 0.044 0.956 14 C -0.185 4.185 15 N -0.584 5.584 16 Si 0.766 3.234 17 H -0.174 1.174 18 H -0.205 1.205 19 H -0.182 1.182 20 C -0.052 4.052 21 C -0.204 4.204 22 C -0.227 4.227 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.129 0.871 26 H 0.157 0.843 27 H 0.125 0.875 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.828 -9.412 15.483 18.212 hybrid contribution -0.238 1.143 -0.876 1.460 sum 1.590 -8.269 14.608 16.861 Atomic orbital electron populations 1.23055 0.78751 1.04438 1.00871 1.87745 1.22048 1.24938 1.94135 1.22658 0.89718 0.86693 1.02822 0.87349 1.23491 0.98232 1.05140 0.89046 1.22637 1.04631 0.96440 0.98064 0.84048 1.20158 0.80967 0.88325 0.78375 1.90620 1.45726 1.47672 1.63534 1.47396 1.14495 1.17099 1.50606 1.19304 0.96502 0.83116 0.90698 1.21435 1.41329 0.99452 0.94528 0.95563 1.25811 0.95554 1.02439 0.94692 1.70053 1.49106 1.33277 1.05942 0.85777 0.79893 0.78502 0.79251 1.17375 1.20483 1.18163 1.22026 0.83629 0.92198 1.07347 1.23471 0.98285 1.03852 0.94810 1.23356 1.00451 1.04391 0.94462 0.92264 0.94381 0.87058 0.84283 0.87463 0.96312 0.93497 0.92232 0.83490 0.84518 0.89661 0.90328 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.88 113.37 1.23 1.72 16 2 O -0.37 -9.71 10.96 -148.98 -1.63 -11.34 16 3 C 0.04 1.14 5.96 30.59 0.18 1.32 16 4 H 0.11 3.41 7.45 -2.38 -0.02 3.39 16 5 C -0.12 -2.82 10.18 30.59 0.31 -2.51 16 6 C -0.20 -6.07 5.25 -11.54 -0.06 -6.13 16 7 H 0.14 3.85 6.54 -2.39 -0.02 3.83 16 8 C 0.53 22.74 7.46 87.65 0.65 23.39 16 9 O -0.59 -30.73 15.84 -3.05 -0.05 -30.78 16 10 N -0.57 -24.22 2.79 -801.99 -2.24 -26.46 16 11 C 0.23 11.34 3.53 85.63 0.30 11.64 16 12 C -0.53 -31.78 9.75 25.60 0.25 -31.53 16 13 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 14 C 0.01 0.78 5.47 84.65 0.46 1.25 16 15 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 16 Si 0.94 44.92 27.47 68.60 1.88 46.80 16 17 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.26 -11.89 6.54 99.48 0.65 -11.24 16 20 C 0.05 1.65 6.03 45.02 0.27 1.92 16 21 C -0.17 -4.11 10.12 30.60 0.31 -3.80 16 22 C -0.19 -5.83 9.72 30.62 0.30 -5.53 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.02 1.03 6.48 -2.39 -0.02 1.01 16 29 H 0.05 2.16 5.75 -2.39 -0.01 2.15 16 30 H 0.27 15.93 8.31 -92.70 -0.77 15.15 16 31 H 0.15 3.80 6.29 -2.39 -0.02 3.79 16 32 H 0.14 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 34 H 0.08 3.04 6.29 -2.38 -0.01 3.02 16 35 H 0.12 3.05 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -77.50 296.41 3.50 -74.00 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.02 Total: 16.09 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.21 Total: -8.27 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.94 Total: -86.50 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.68 Total: -42.12 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -77.50 3.50 -74.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689940880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.932 kcal (2) G-P(sol) polarization free energy of solvation -77.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds