Wall clock time and date at job start Mon Mar 30 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29394 * 125.58698 * 2 1 4 4 N 1.40169 * 108.14222 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.35272 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47473 * 270.02901 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00162 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99868 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47023 * 90.00014 * 13 11 9 15 15 H 1.48496 * 109.47251 * 210.00457 * 13 11 9 16 16 H 1.48498 * 109.47139 * 330.00202 * 13 11 9 17 17 C 1.34940 * 107.29901 * 0.26358 * 4 3 2 18 18 O 1.21817 * 126.30457 * 179.71500 * 17 4 3 19 19 N 1.34821 * 107.39595 * 359.57989 * 17 4 3 20 20 C 1.46497 * 125.83349 * 180.14066 * 19 17 4 21 21 H 1.09005 * 109.46733 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47006 * 120.02349 * 1 2 3 23 23 H 1.08996 * 109.47089 * 240.02681 * 1 2 3 24 24 H 1.09002 * 109.47129 * 150.02643 * 5 4 3 25 25 H 1.08998 * 109.46845 * 30.03450 * 5 4 3 26 26 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 0.96996 * 119.99309 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.47203 * 270.32712 * 20 19 17 34 34 H 1.08999 * 109.47488 * 30.33164 * 20 19 17 35 35 H 1.09002 * 109.46703 * 150.33434 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6321 0.0006 5 6 4.7794 1.4974 0.0003 6 6 5.1909 1.7982 -1.4423 7 6 6.4259 2.7014 -1.4425 8 6 6.8370 3.0028 -2.8851 9 6 8.0530 3.8928 -2.8854 10 1 8.4888 4.2121 -1.9502 11 6 8.6093 4.2997 -4.0796 12 7 9.6703 5.0770 -4.0798 13 14 7.8560 3.7471 -5.6971 14 1 6.8290 4.7301 -6.1264 15 1 8.9172 3.6561 -6.7319 16 1 7.2229 2.4157 -5.5191 17 6 3.5938 -0.7173 -0.0050 18 8 4.5737 -1.4410 -0.0111 19 7 2.3063 -1.1171 0.0006 20 6 1.8394 -2.5057 0.0003 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3633 -0.5134 0.8902 24 1 5.5983 0.9940 0.5142 25 1 4.5469 2.4302 0.5139 26 1 4.3720 2.3016 -1.9562 27 1 5.4234 0.8653 -1.9558 28 1 6.1938 3.6343 -0.9288 29 1 7.2445 2.1976 -0.9287 30 1 7.0690 2.0700 -3.3992 31 1 6.0181 3.5067 -3.3986 32 1 10.0617 5.3628 -4.9200 33 1 1.7242 -2.8502 -1.0274 34 1 2.5669 -3.1338 0.5146 35 1 0.8797 -2.5664 0.5135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691728607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:58 Heat of formation + Delta-G solvation = 24.400269 kcal Electronic energy + Delta-G solvation = -16643.562207 eV Core-core repulsion = 13871.284591 eV Total energy + Delta-G solvation = -2772.277616 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.47479 -37.36449 -36.30548 -34.49690 -32.68482 -31.98013 -30.27817 -27.84382 -27.48680 -24.84839 -22.30456 -21.31616 -20.87923 -20.07897 -17.35889 -16.97849 -16.56962 -15.81617 -15.77001 -14.73991 -14.28979 -14.23064 -13.97884 -13.80389 -13.10873 -12.93589 -12.79467 -12.58884 -12.53851 -11.97846 -11.90543 -11.80214 -11.14541 -10.87217 -10.60215 -10.30964 -10.15917 -9.86300 -9.67276 -9.52433 -9.13396 -8.49174 -8.45579 -6.00001 -3.97500 1.76227 1.80924 2.67150 2.92239 3.34374 3.41423 3.46775 4.21081 4.39188 4.49820 4.69057 4.88350 5.00558 5.01934 5.18967 5.29832 5.34001 5.34993 5.46880 5.58959 5.70892 5.84268 6.00822 6.22508 6.34050 6.53421 6.62274 6.72104 6.96814 7.35466 7.48727 7.61205 7.84384 8.04853 8.58772 9.05182 9.63032 11.13581 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039515 B = 0.004284 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.426958 B = 6535.073106 C = 6593.921278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.262 3.738 3 N -0.275 5.275 4 N -0.445 5.445 5 C 0.157 3.843 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.014 4.014 9 C -0.519 4.519 10 H 0.072 0.928 11 C 0.065 3.935 12 N -0.905 5.905 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.641 3.359 18 O -0.554 6.554 19 N -0.561 5.561 20 C 0.099 3.901 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.119 -13.275 9.316 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.017 4.017 3 N -0.098 5.098 4 N -0.265 5.265 5 C 0.038 3.962 6 C -0.176 4.176 7 C -0.137 4.137 8 C -0.051 4.051 9 C -0.557 4.557 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.191 1.191 17 C 0.341 3.659 18 O -0.428 6.428 19 N -0.291 5.291 20 C -0.044 4.044 21 H 0.118 0.882 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.169 -12.649 9.211 26.324 hybrid contribution -0.238 -0.988 -1.010 1.433 sum -21.408 -13.637 8.200 26.674 Atomic orbital electron populations 1.20387 0.83124 1.05794 1.03963 1.24150 0.96405 0.82101 0.99005 1.76981 0.88304 1.21155 1.23355 1.49224 1.04166 1.04975 1.68122 1.21768 0.81704 0.93162 0.99590 1.22124 0.99918 1.01093 0.94455 1.21393 0.94394 0.97573 1.00313 1.19565 0.96654 0.96649 0.92241 1.21170 1.10878 1.29191 0.94479 0.90979 1.25035 0.94720 0.94637 0.99170 1.69923 1.22071 1.35632 1.26807 0.86771 0.79011 0.79835 0.83642 1.20311 1.21396 1.19078 1.16808 0.83454 0.83739 0.81905 1.91088 1.34689 1.58108 1.58893 1.45892 1.06854 1.08193 1.68156 1.21762 1.01081 0.78086 1.03423 0.88227 0.89237 0.89319 0.88733 0.88736 0.91714 0.92001 0.92387 0.92389 0.96666 0.97088 0.92797 0.91000 0.89423 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 9.85 36.01 0.35 0.03 16 2 C 0.26 2.66 7.98 -154.16 -1.23 1.43 16 3 N -0.28 -3.75 12.53 32.97 0.41 -3.34 16 4 N -0.44 -6.96 3.63 -65.12 -0.24 -7.19 16 5 C 0.16 2.42 6.39 -4.04 -0.03 2.39 16 6 C -0.14 -2.42 5.54 -26.73 -0.15 -2.57 16 7 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 8 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 9 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 10 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 12 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 13 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 17 C 0.64 10.32 8.60 -86.73 -0.75 9.58 16 18 O -0.55 -10.70 17.72 5.08 0.09 -10.61 16 19 N -0.56 -6.42 3.14 -125.41 -0.39 -6.82 16 20 C 0.10 0.67 10.85 59.85 0.65 1.31 16 21 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.09 0.26 7.79 -51.93 -0.40 -0.14 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -36.94 301.06 -6.72 -43.65 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -5.40 Total: -6.03 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.83 Total: -4.20 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.56 Total: -45.20 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.94 -6.72 -43.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691728607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.053 kcal (2) G-P(sol) polarization free energy of solvation -36.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds