Wall clock time and date at job start Mon Mar 30 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29394 * 125.58698 * 2 1 4 4 N 1.40169 * 108.14222 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.35272 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47473 * 270.02901 * 5 4 3 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00162 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99868 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47023 * 90.00014 * 13 11 9 15 15 H 1.48496 * 109.47251 * 210.00457 * 13 11 9 16 16 H 1.48498 * 109.47139 * 330.00202 * 13 11 9 17 17 C 1.34940 * 107.29901 * 0.26358 * 4 3 2 18 18 O 1.21817 * 126.30457 * 179.71500 * 17 4 3 19 19 N 1.34821 * 107.39595 * 359.57989 * 17 4 3 20 20 C 1.46497 * 125.83349 * 180.14066 * 19 17 4 21 21 H 1.09005 * 109.46733 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47006 * 120.02349 * 1 2 3 23 23 H 1.08996 * 109.47089 * 240.02681 * 1 2 3 24 24 H 1.09002 * 109.47129 * 150.02643 * 5 4 3 25 25 H 1.08998 * 109.46845 * 30.03450 * 5 4 3 26 26 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 0.96996 * 119.99309 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.47203 * 270.32712 * 20 19 17 34 34 H 1.08999 * 109.47488 * 30.33164 * 20 19 17 35 35 H 1.09002 * 109.46703 * 150.33434 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6321 0.0006 5 6 4.7794 1.4974 0.0003 6 6 5.1909 1.7982 -1.4423 7 6 6.4259 2.7014 -1.4425 8 6 6.8370 3.0028 -2.8851 9 6 8.0530 3.8928 -2.8854 10 1 8.4888 4.2121 -1.9502 11 6 8.6093 4.2997 -4.0796 12 7 9.6703 5.0770 -4.0798 13 14 7.8560 3.7471 -5.6971 14 1 6.8290 4.7301 -6.1264 15 1 8.9172 3.6561 -6.7319 16 1 7.2229 2.4157 -5.5191 17 6 3.5938 -0.7173 -0.0050 18 8 4.5737 -1.4410 -0.0111 19 7 2.3063 -1.1171 0.0006 20 6 1.8394 -2.5057 0.0003 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3633 -0.5134 0.8902 24 1 5.5983 0.9940 0.5142 25 1 4.5469 2.4302 0.5139 26 1 4.3720 2.3016 -1.9562 27 1 5.4234 0.8653 -1.9558 28 1 6.1938 3.6343 -0.9288 29 1 7.2445 2.1976 -0.9287 30 1 7.0690 2.0700 -3.3992 31 1 6.0181 3.5067 -3.3986 32 1 10.0617 5.3628 -4.9200 33 1 1.7242 -2.8502 -1.0274 34 1 2.5669 -3.1338 0.5146 35 1 0.8797 -2.5664 0.5135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691728607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:58 Heat of formation + Delta-G solvation = -0.358926 kcal Electronic energy + Delta-G solvation = -16644.635846 eV Core-core repulsion = 13871.284591 eV Total energy + Delta-G solvation = -2773.351255 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.45941 -38.54653 -37.59542 -35.96672 -34.48452 -33.09455 -31.60494 -29.13676 -28.24948 -26.37376 -23.78968 -22.37682 -21.91416 -21.87915 -18.90977 -18.33416 -17.88427 -16.91774 -16.87047 -16.33106 -16.16869 -15.09031 -14.92225 -14.74203 -14.44521 -14.23430 -13.92249 -13.78026 -13.58351 -13.26004 -12.93226 -12.88419 -12.82019 -12.50536 -12.24351 -11.81431 -11.74065 -11.47372 -11.38513 -11.31260 -10.88402 -10.78321 -9.57147 -8.31545 -6.35442 0.78493 0.98964 1.32554 1.34987 1.47253 1.51994 2.09919 2.34160 3.03448 3.39029 3.76550 3.91385 3.95578 4.15761 4.23704 4.44176 4.45321 4.49449 4.71417 4.71877 4.77529 4.83426 4.87552 4.95212 5.05210 5.08033 5.10305 5.20872 5.48701 5.56762 5.64100 5.70236 6.26586 6.63529 6.72142 6.92740 7.29227 8.85315 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039515 B = 0.004284 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.426958 B = 6535.073106 C = 6593.921278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.282 3.718 3 N -0.314 5.314 4 N -0.456 5.456 5 C 0.162 3.838 6 C -0.120 4.120 7 C -0.091 4.091 8 C -0.012 4.012 9 C -0.534 4.534 10 H 0.035 0.965 11 C 0.004 3.996 12 N -0.950 5.950 13 Si 0.951 3.049 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.254 1.254 17 C 0.623 3.377 18 O -0.601 6.601 19 N -0.556 5.556 20 C 0.089 3.911 21 H 0.105 0.895 22 H 0.115 0.885 23 H 0.120 0.880 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.012 0.988 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.679 -14.488 8.877 30.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 N -0.138 5.138 4 N -0.275 5.275 5 C 0.041 3.959 6 C -0.159 4.159 7 C -0.129 4.129 8 C -0.050 4.050 9 C -0.572 4.572 10 H 0.054 0.946 11 C -0.193 4.193 12 N -0.591 5.591 13 Si 0.774 3.226 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.178 1.178 17 C 0.322 3.678 18 O -0.478 6.478 19 N -0.284 5.284 20 C -0.052 4.052 21 H 0.124 0.876 22 H 0.133 0.867 23 H 0.138 0.862 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.790 -13.874 8.788 29.737 hybrid contribution 0.809 -0.626 -0.794 1.295 sum -23.982 -14.500 7.994 29.143 Atomic orbital electron populations 1.20763 0.78585 1.07129 1.06612 1.25332 0.98339 0.80696 0.95140 1.77020 0.87243 1.22687 1.26802 1.49200 1.05190 1.04894 1.68208 1.21586 0.82294 0.94094 0.97912 1.21871 0.98441 0.99449 0.96091 1.21238 0.95598 0.98564 0.97493 1.19529 0.94886 0.95365 0.95207 1.21517 1.12448 1.29902 0.93311 0.94625 1.26018 0.95147 0.94626 1.03501 1.70067 1.23755 1.37120 1.28175 0.85647 0.78510 0.80050 0.78374 1.18746 1.20670 1.17828 1.17157 0.84597 0.83801 0.82232 1.91032 1.36589 1.59121 1.61079 1.46136 1.05371 1.10208 1.66704 1.22178 1.02713 0.75438 1.04825 0.87615 0.86681 0.86158 0.89146 0.87007 0.91475 0.93601 0.91696 0.92860 0.96996 0.96279 0.92426 0.89788 0.90612 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 9.85 71.24 0.70 0.40 16 2 C 0.28 4.93 7.98 137.69 1.10 6.03 16 3 N -0.31 -8.05 12.53 -49.59 -0.62 -8.67 16 4 N -0.46 -14.07 3.63 -478.02 -1.73 -15.80 16 5 C 0.16 4.94 6.39 86.38 0.55 5.50 16 6 C -0.12 -4.20 5.54 30.59 0.17 -4.03 16 7 C -0.09 -3.70 5.15 30.59 0.16 -3.55 16 8 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 9 C -0.53 -32.17 9.66 25.60 0.25 -31.92 16 10 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 11 C 0.00 0.23 5.47 84.65 0.46 0.69 16 12 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 13 Si 0.95 46.23 27.47 68.60 1.88 48.12 16 14 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 16 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 17 C 0.62 19.93 8.60 178.99 1.54 21.47 16 18 O -0.60 -23.80 17.72 -4.72 -0.08 -23.88 16 19 N -0.56 -11.60 3.14 -668.82 -2.10 -13.70 16 20 C 0.09 0.94 10.85 127.77 1.39 2.33 16 21 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 22 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 23 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 25 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 31 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 32 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 1.02 8.08 -2.39 -0.02 1.01 16 35 H 0.13 0.16 7.79 -2.39 -0.02 0.14 16 Total: -1.00 -83.25 301.06 5.08 -78.16 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.00 Total: 0.39 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 6.44 Total: -3.56 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -4.16 Total: -99.23 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.08 Total: -23.88 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -83.25 5.08 -78.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691728607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.806 kcal (2) G-P(sol) polarization free energy of solvation -83.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds