Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46840 * 2 1 4 4 C 1.34971 * 117.00026 * 179.97438 * 3 2 1 5 5 O 1.21714 * 119.99568 * 0.02562 * 4 3 2 6 6 C 1.41179 * 120.00332 * 180.02562 * 4 3 2 7 7 C 1.35029 * 120.00277 * 180.02562 * 6 4 3 8 8 N 1.36568 * 120.00222 * 174.51159 * 7 6 4 9 9 C 1.46502 * 120.00238 * 4.68342 * 8 7 6 10 10 C 1.50706 * 109.46957 * 89.99440 * 9 8 7 11 11 H 1.07995 * 120.00117 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99650 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99706 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00055 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47044 * 90.00069 * 14 12 10 16 16 H 1.48504 * 109.46870 * 209.99469 * 14 12 10 17 17 H 1.48492 * 109.47051 * 329.99993 * 14 12 10 18 18 C 1.46505 * 120.00239 * 184.67653 * 8 7 6 19 19 C 1.53000 * 117.49339 * 14.31246 * 18 8 7 20 20 C 1.52990 * 117.49970 * 305.65421 * 18 8 7 21 21 H 1.09002 * 109.47133 * 60.00359 * 1 2 3 22 22 H 1.09006 * 109.47096 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47759 * 300.00456 * 1 2 3 24 24 H 1.08995 * 109.47346 * 239.99744 * 2 1 3 25 25 H 1.08997 * 109.46719 * 119.99438 * 2 1 3 26 26 H 1.08004 * 119.99912 * 0.02562 * 6 4 3 27 27 H 1.08005 * 119.99547 * 354.51892 * 7 6 4 28 28 H 1.08995 * 109.47458 * 209.99879 * 9 8 7 29 29 H 1.09004 * 109.47136 * 330.00025 * 9 8 7 30 30 H 0.97003 * 120.00310 * 180.02562 * 13 12 10 31 31 H 1.09000 * 115.54941 * 159.97476 * 18 8 7 32 32 H 1.08998 * 117.50192 * 359.97438 * 19 18 8 33 33 H 1.09007 * 117.49539 * 145.01846 * 19 18 8 34 34 H 1.09002 * 117.49545 * 214.97718 * 20 18 8 35 35 H 1.09007 * 117.50321 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3443 1.5242 0.0005 5 8 4.0857 0.5589 0.0005 6 6 3.8839 2.8288 0.0011 7 6 5.2226 3.0058 0.0011 8 7 5.7453 4.2624 -0.1114 9 6 4.8562 5.4267 -0.1289 10 6 4.6408 5.9154 1.2804 11 1 5.1180 5.4091 2.1064 12 6 3.8336 7.0083 1.5152 13 7 3.6460 7.4350 2.7449 14 14 3.0066 7.8827 0.0866 15 1 1.6785 7.2687 -0.1676 16 1 2.8320 9.3193 0.4198 17 1 3.8515 7.7552 -1.1278 18 6 7.1951 4.4463 -0.2146 19 6 8.0432 3.2117 -0.5268 20 6 8.0659 3.8213 0.8771 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5137 0.8900 26 1 3.2260 3.6853 0.0015 27 1 5.8799 2.1534 0.0900 28 1 5.3085 6.2204 -0.7235 29 1 3.8982 5.1459 -0.5664 30 1 3.0779 8.2037 2.9103 31 1 7.5195 5.3989 -0.6335 32 1 7.5226 2.2627 -0.6550 33 1 8.9259 3.3522 -1.1507 34 1 8.9634 4.3626 1.1762 35 1 7.5601 3.2736 1.6724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694865951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = -38.914477 kcal Electronic energy + Delta-G solvation = -16926.551859 eV Core-core repulsion = 14119.235959 eV Total energy + Delta-G solvation = -2807.315900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.84026 -38.64722 -36.13393 -34.77345 -32.64909 -31.50423 -30.22949 -27.83088 -24.38183 -22.69336 -22.29881 -22.19255 -20.53010 -18.12454 -17.58525 -16.98526 -16.56073 -16.06537 -15.52917 -14.92114 -14.32936 -14.02298 -13.64735 -13.05724 -12.77964 -12.61930 -12.47272 -12.30448 -11.78062 -11.64854 -11.52307 -11.29374 -11.03262 -10.85419 -10.63933 -10.19449 -10.14404 -10.04595 -9.76185 -9.73194 -9.38149 -8.70884 -6.89844 -6.20335 -4.21884 1.99200 3.19356 3.24794 3.27273 3.33146 3.78644 3.86912 4.16168 4.27677 4.91267 5.07540 5.12887 5.13523 5.14919 5.21757 5.32220 5.47380 5.63608 5.76812 5.89204 5.94654 6.08690 6.09635 6.25051 6.28028 6.42042 6.62157 6.66449 6.94559 7.14869 7.40918 7.72207 7.99979 8.36529 8.64949 8.84794 9.37416 10.92467 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.008292 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.446126 B = 3375.848523 C = 4813.201178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.358 6.358 4 C 0.524 3.476 5 O -0.570 6.570 6 C -0.382 4.382 7 C 0.257 3.743 8 N -0.541 5.541 9 C 0.209 3.791 10 C -0.537 4.537 11 H 0.079 0.921 12 C 0.076 3.924 13 N -0.891 5.891 14 Si 0.872 3.128 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.090 3.910 19 C -0.201 4.201 20 C -0.192 4.192 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.267 0.733 31 H 0.132 0.868 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -8.594 -7.311 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.276 6.276 4 C 0.379 3.621 5 O -0.466 6.466 6 C -0.412 4.412 7 C 0.122 3.878 8 N -0.238 5.238 9 C 0.089 3.911 10 C -0.576 4.576 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.528 5.528 14 Si 0.698 3.302 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.015 4.015 19 C -0.239 4.239 20 C -0.230 4.230 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.156 0.844 27 H 0.159 0.841 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.089 -8.508 -7.221 11.353 hybrid contribution -0.522 0.425 -0.392 0.779 sum 1.567 -8.082 -7.613 11.213 Atomic orbital electron populations 1.21790 0.93400 1.02226 1.03395 1.22403 0.94786 0.82248 1.01660 1.86234 1.25496 1.30424 1.85420 1.19404 0.79589 0.90328 0.72826 1.90770 1.59924 1.43811 1.52100 1.19880 0.94902 0.95045 1.31381 1.21369 0.94427 0.87731 0.84303 1.46137 1.04593 1.05389 1.67635 1.19996 0.89674 0.82627 0.98834 1.21292 1.30688 1.14076 0.91509 0.90338 1.24850 0.95729 0.96557 0.95587 1.69883 1.37994 1.25579 1.19355 0.86920 0.80833 0.79484 0.82945 1.19612 1.20886 1.19004 1.21731 0.79213 0.97679 1.02899 1.23523 1.02588 0.98005 0.99786 1.23464 1.02716 1.04331 0.92531 0.91752 0.90932 0.91572 0.92314 0.92194 0.84383 0.84120 0.94734 0.93970 0.92342 0.85025 0.88304 0.88026 0.88183 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 16 2 C 0.06 0.95 6.10 37.16 0.23 1.18 16 3 O -0.36 -6.76 10.10 -41.24 -0.42 -7.18 16 4 C 0.52 10.71 7.68 31.85 0.24 10.95 16 5 O -0.57 -12.16 15.88 -19.43 -0.31 -12.47 16 6 C -0.38 -7.91 9.08 -39.61 -0.36 -8.27 16 7 C 0.26 4.92 9.18 -16.58 -0.15 4.77 16 8 N -0.54 -10.40 2.86 -168.30 -0.48 -10.88 16 9 C 0.21 4.63 4.02 -5.19 -0.02 4.61 16 10 C -0.54 -14.37 9.94 -34.44 -0.34 -14.71 16 11 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 14 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 18 C 0.09 1.42 6.61 -67.93 -0.45 0.97 16 19 C -0.20 -2.53 9.79 -26.70 -0.26 -2.79 16 20 C -0.19 -2.71 10.16 -26.70 -0.27 -2.98 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 26 H 0.14 3.06 5.94 -52.48 -0.31 2.75 16 27 H 0.14 2.47 5.55 -52.48 -0.29 2.17 16 28 H 0.03 0.74 7.10 -51.93 -0.37 0.37 16 29 H 0.04 0.95 5.44 -51.93 -0.28 0.66 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.13 1.90 8.10 -51.93 -0.42 1.47 16 32 H 0.10 1.28 6.31 -51.93 -0.33 0.95 16 33 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 299.25 15.07 4.51 4.51 Total: -1.00 -30.81 299.25 -6.67 -37.48 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.97 Total: 4.19 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.10 Total: -5.61 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.29 Total: -36.42 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.73 Total: -19.65 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.81 -6.67 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694865951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.433 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds