Wall clock time and date at job start Mon Mar 30 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46829 * 2 1 4 4 N 1.46497 * 109.46980 * 119.99841 * 2 1 3 5 5 C 1.36934 * 119.99511 * 118.25966 * 4 2 1 6 6 H 1.08006 * 119.99426 * 150.54025 * 5 4 2 7 7 C 1.38809 * 120.00471 * 330.54189 * 5 4 2 8 8 N 1.31621 * 120.00174 * 341.56836 * 7 5 4 9 9 Si 1.86804 * 120.00193 * 161.57480 * 7 5 4 10 10 H 1.48497 * 109.47368 * 89.99826 * 9 7 5 11 11 H 1.48503 * 109.46890 * 210.00084 * 9 7 5 12 12 H 1.48502 * 109.46893 * 329.99754 * 9 7 5 13 13 C 1.46503 * 120.00125 * 298.26523 * 4 2 1 14 14 C 1.53000 * 109.46864 * 90.00081 * 13 4 2 15 15 C 1.53000 * 109.46591 * 180.02562 * 14 13 4 16 16 C 1.50701 * 109.47232 * 179.97438 * 15 14 13 17 17 N 1.31134 * 126.55226 * 89.99273 * 16 15 14 18 18 C 1.34496 * 105.61123 * 180.02562 * 17 16 15 19 19 N 1.29938 * 107.42914 * 0.02562 * 18 17 16 20 20 O 1.21304 * 110.25056 * 359.70888 * 19 18 17 21 21 H 1.08999 * 109.47551 * 300.00006 * 1 2 3 22 22 H 1.09006 * 109.46729 * 59.99978 * 1 2 3 23 23 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46929 * 240.00391 * 2 1 3 25 25 H 1.09001 * 109.47149 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47474 * 299.99975 * 3 2 1 27 27 H 1.09001 * 109.47364 * 60.00130 * 3 2 1 28 28 H 0.97000 * 120.00255 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47026 * 329.99976 * 13 4 2 30 30 H 1.09004 * 109.46681 * 209.99523 * 13 4 2 31 31 H 1.08999 * 109.47385 * 60.00115 * 14 13 4 32 32 H 1.08999 * 109.47150 * 299.99692 * 14 13 4 33 33 H 1.09002 * 109.47425 * 299.99361 * 15 14 13 34 34 H 1.08998 * 109.47796 * 60.00024 * 15 14 13 35 35 H 1.08004 * 126.28707 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7759 -1.8243 1.0708 6 1 3.5100 -2.0693 1.8242 7 6 2.6004 -2.6588 -0.0245 8 7 1.4985 -2.5824 -0.7403 9 14 3.9282 -3.8904 -0.4827 10 1 3.6774 -5.1736 0.2214 11 1 3.9067 -4.1184 -1.9499 12 1 5.2559 -3.3581 -0.0838 13 6 1.6960 -0.1682 2.5264 14 6 0.3860 -0.7898 3.0147 15 6 0.0491 -0.2438 4.4037 16 6 -1.2415 -0.8554 4.8845 17 7 -1.3715 -1.9627 5.5748 18 6 -2.6932 -2.1121 5.7738 19 7 -3.2886 -1.1073 5.2044 20 8 -2.4721 -0.3707 4.6924 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.3757 -3.1658 -1.5054 29 1 1.5872 0.9151 2.4748 30 1 2.4984 -0.4203 3.2199 31 1 0.4948 -1.8731 3.0663 32 1 -0.4163 -0.5378 2.3212 33 1 0.8513 -0.4954 5.0974 34 1 -0.0599 0.8395 4.3517 35 1 -3.1719 -2.9192 6.3085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695653909.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:54 Heat of formation + Delta-G solvation = 80.266471 kcal Electronic energy + Delta-G solvation = -17389.890573 eV Core-core repulsion = 14620.035498 eV Total energy + Delta-G solvation = -2769.855075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.42746 -37.04471 -35.66558 -34.28697 -31.89194 -31.53364 -29.56610 -26.35423 -26.01784 -24.28169 -23.55593 -22.10713 -20.83799 -19.08191 -17.85240 -17.53406 -16.85760 -15.17692 -14.83916 -14.61359 -14.24969 -13.67098 -13.43155 -12.81174 -12.51794 -12.38426 -12.01888 -11.63200 -11.49462 -11.34834 -11.24509 -11.13965 -10.90769 -10.79243 -10.73729 -10.19455 -10.04803 -9.88235 -9.75280 -9.50657 -9.33968 -8.42192 -6.66204 -5.79694 -3.23243 1.30063 2.41195 2.98649 3.37703 3.45425 3.47514 3.95618 4.31927 4.49908 5.15171 5.27786 5.35828 5.37871 5.65630 5.77907 5.97525 6.02287 6.11510 6.22842 6.27518 6.44155 6.49608 6.54119 6.67693 6.77909 6.86001 6.90435 7.04166 7.21170 7.66523 7.74433 7.86955 8.27976 8.49390 9.23932 9.86642 10.39698 11.26954 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.006479 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.363206 B = 4320.862064 C = 4837.342016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.179 3.821 3 C -0.164 4.164 4 N -0.581 5.581 5 C -0.256 4.256 6 H 0.065 0.935 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.151 3.849 14 C -0.141 4.141 15 C -0.031 4.031 16 C 0.202 3.798 17 N -0.493 5.493 18 C 0.144 3.856 19 N -0.397 5.397 20 O 0.070 5.930 21 H 0.028 0.972 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.253 0.747 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 5.653 8.083 10.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.073 3.927 3 C -0.223 4.223 4 N -0.301 5.301 5 C -0.385 4.385 6 H 0.083 0.917 7 C -0.193 4.193 8 N -0.537 5.537 9 Si 0.727 3.273 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.023 3.977 14 C -0.183 4.183 15 C -0.071 4.071 16 C -0.018 4.018 17 N -0.227 5.227 18 C -0.150 4.150 19 N -0.106 5.106 20 O 0.013 5.987 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.555 5.296 8.135 10.723 hybrid contribution 0.412 -0.927 -0.250 1.045 sum -4.142 4.369 7.885 9.921 Atomic orbital electron populations 1.22235 0.98881 1.01930 0.97510 1.20288 0.91524 0.88736 0.92201 1.22364 1.00663 0.99953 0.99323 1.44015 1.59527 1.27734 0.98826 1.19147 1.12040 0.99272 1.08078 0.91750 1.25035 0.96405 0.97393 1.00468 1.70025 1.23506 1.40024 1.20141 0.86384 0.82072 0.81344 0.77477 1.21497 1.21649 1.20488 1.20820 0.92738 0.95654 0.88470 1.22655 1.01974 1.02584 0.91038 1.20543 0.85948 1.00366 1.00266 1.29276 0.90272 0.89817 0.92398 1.72002 1.16680 1.15933 1.18051 1.27462 0.87383 0.99308 1.00830 1.74629 1.16206 1.05796 1.13941 1.85277 1.14658 1.42317 1.56445 0.95291 0.95491 0.91108 0.88518 0.93578 0.94257 0.94252 0.93730 0.94016 0.93677 0.91000 0.91212 0.87599 0.88601 0.76024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.09 37.16 0.30 -2.78 16 2 C 0.18 3.99 2.39 -67.93 -0.16 3.82 16 3 C -0.16 -3.05 9.14 37.16 0.34 -2.71 16 4 N -0.58 -13.42 2.41 -165.66 -0.40 -13.82 16 5 C -0.26 -6.65 9.57 -15.06 -0.14 -6.79 16 6 H 0.06 1.67 7.90 -52.48 -0.41 1.25 16 7 C 0.01 0.16 4.85 -17.43 -0.08 0.08 16 8 N -0.89 -24.65 10.40 55.49 0.58 -24.07 16 9 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.15 2.80 5.13 -4.04 -0.02 2.78 16 14 C -0.14 -2.45 5.25 -26.73 -0.14 -2.59 16 15 C -0.03 -0.41 5.84 -27.88 -0.16 -0.57 16 16 C 0.20 3.01 7.77 -13.05 -0.10 2.90 16 17 N -0.49 -7.73 11.55 -13.75 -0.16 -7.89 16 18 C 0.14 1.98 13.11 -91.34 -1.20 0.78 16 19 N -0.40 -6.06 12.16 27.67 0.34 -5.72 16 20 O 0.07 1.07 11.31 18.10 0.20 1.27 16 21 H 0.03 0.54 6.11 -51.93 -0.32 0.23 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 1.71 7.40 -51.93 -0.38 1.32 16 24 H 0.10 2.50 5.85 -51.93 -0.30 2.20 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.66 6.61 -51.93 -0.34 0.32 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 0.69 6.34 -51.93 -0.33 0.37 16 30 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.07 1.30 5.43 -51.93 -0.28 1.02 16 33 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.22 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -29.01 288.76 -6.38 -35.38 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.89 Total: -0.59 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.37 Total: -5.08 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.36 Total: -51.50 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.01 -6.38 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695653909.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.651 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds