Wall clock time and date at job start Mon Mar 30 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46829 * 2 1 4 4 N 1.46497 * 109.46980 * 119.99841 * 2 1 3 5 5 C 1.36934 * 119.99511 * 118.25966 * 4 2 1 6 6 H 1.08006 * 119.99426 * 150.54025 * 5 4 2 7 7 C 1.38809 * 120.00471 * 330.54189 * 5 4 2 8 8 N 1.31621 * 120.00174 * 341.56836 * 7 5 4 9 9 Si 1.86804 * 120.00193 * 161.57480 * 7 5 4 10 10 H 1.48497 * 109.47368 * 89.99826 * 9 7 5 11 11 H 1.48503 * 109.46890 * 210.00084 * 9 7 5 12 12 H 1.48502 * 109.46893 * 329.99754 * 9 7 5 13 13 C 1.46503 * 120.00125 * 298.26523 * 4 2 1 14 14 C 1.53000 * 109.46864 * 90.00081 * 13 4 2 15 15 C 1.53000 * 109.46591 * 180.02562 * 14 13 4 16 16 C 1.50701 * 109.47232 * 179.97438 * 15 14 13 17 17 N 1.31134 * 126.55226 * 89.99273 * 16 15 14 18 18 C 1.34496 * 105.61123 * 180.02562 * 17 16 15 19 19 N 1.29938 * 107.42914 * 0.02562 * 18 17 16 20 20 O 1.21304 * 110.25056 * 359.70888 * 19 18 17 21 21 H 1.08999 * 109.47551 * 300.00006 * 1 2 3 22 22 H 1.09006 * 109.46729 * 59.99978 * 1 2 3 23 23 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46929 * 240.00391 * 2 1 3 25 25 H 1.09001 * 109.47149 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47474 * 299.99975 * 3 2 1 27 27 H 1.09001 * 109.47364 * 60.00130 * 3 2 1 28 28 H 0.97000 * 120.00255 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47026 * 329.99976 * 13 4 2 30 30 H 1.09004 * 109.46681 * 209.99523 * 13 4 2 31 31 H 1.08999 * 109.47385 * 60.00115 * 14 13 4 32 32 H 1.08999 * 109.47150 * 299.99692 * 14 13 4 33 33 H 1.09002 * 109.47425 * 299.99361 * 15 14 13 34 34 H 1.08998 * 109.47796 * 60.00024 * 15 14 13 35 35 H 1.08004 * 126.28707 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7759 -1.8243 1.0708 6 1 3.5100 -2.0693 1.8242 7 6 2.6004 -2.6588 -0.0245 8 7 1.4985 -2.5824 -0.7403 9 14 3.9282 -3.8904 -0.4827 10 1 3.6774 -5.1736 0.2214 11 1 3.9067 -4.1184 -1.9499 12 1 5.2559 -3.3581 -0.0838 13 6 1.6960 -0.1682 2.5264 14 6 0.3860 -0.7898 3.0147 15 6 0.0491 -0.2438 4.4037 16 6 -1.2415 -0.8554 4.8845 17 7 -1.3715 -1.9627 5.5748 18 6 -2.6932 -2.1121 5.7738 19 7 -3.2886 -1.1073 5.2044 20 8 -2.4721 -0.3707 4.6924 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.3757 -3.1658 -1.5054 29 1 1.5872 0.9151 2.4748 30 1 2.4984 -0.4203 3.2199 31 1 0.4948 -1.8731 3.0663 32 1 -0.4163 -0.5378 2.3212 33 1 0.8513 -0.4954 5.0974 34 1 -0.0599 0.8395 4.3517 35 1 -3.1719 -2.9192 6.3085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695653909.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:54 Heat of formation + Delta-G solvation = 62.652672 kcal Electronic energy + Delta-G solvation = -17390.654365 eV Core-core repulsion = 14620.035498 eV Total energy + Delta-G solvation = -2770.618867 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.55728 -38.68809 -36.84637 -35.58699 -33.76104 -32.91249 -31.17853 -27.85897 -27.61275 -25.47811 -25.22932 -23.42899 -22.19644 -20.82259 -19.01991 -18.80864 -18.50338 -16.70277 -16.34645 -16.12202 -15.58982 -15.36378 -14.78573 -14.39352 -14.14324 -13.62125 -13.52033 -13.22376 -12.92841 -12.85806 -12.76493 -12.64401 -12.47132 -12.41456 -12.08684 -11.97843 -11.73361 -11.54665 -11.16391 -11.10833 -10.91972 -10.36577 -8.52962 -7.78575 -5.22572 0.16201 1.30538 1.47597 1.50859 1.58461 1.87380 2.56949 2.92871 3.29684 3.36093 3.71914 4.07298 4.20551 4.35675 4.56805 4.65644 4.75761 4.79587 4.86128 4.94937 5.00195 5.02216 5.03909 5.06966 5.19656 5.28027 5.43597 5.43860 5.65159 5.76495 5.88577 6.09943 6.53299 7.15670 7.28979 8.03408 8.47746 9.24949 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.006479 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.363206 B = 4320.862064 C = 4837.342016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 C -0.151 4.151 4 N -0.598 5.598 5 C -0.257 4.257 6 H 0.062 0.938 7 C -0.044 4.044 8 N -0.918 5.918 9 Si 0.951 3.049 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.272 1.272 13 C 0.148 3.852 14 C -0.125 4.125 15 C -0.021 4.021 16 C 0.200 3.800 17 N -0.518 5.518 18 C 0.149 3.851 19 N -0.415 5.415 20 O 0.061 5.939 21 H 0.050 0.950 22 H 0.039 0.961 23 H 0.030 0.970 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.244 0.756 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 7.095 9.451 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.067 3.933 3 C -0.210 4.210 4 N -0.318 5.318 5 C -0.388 4.388 6 H 0.080 0.920 7 C -0.241 4.241 8 N -0.563 5.563 9 Si 0.781 3.219 10 H -0.219 1.219 11 H -0.223 1.223 12 H -0.197 1.197 13 C 0.022 3.978 14 C -0.167 4.167 15 C -0.060 4.060 16 C -0.019 4.019 17 N -0.252 5.252 18 C -0.144 4.144 19 N -0.126 5.126 20 O 0.007 5.993 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.429 6.770 9.519 12.493 hybrid contribution 0.355 -1.368 -0.614 1.541 sum -4.074 5.403 8.905 11.184 Atomic orbital electron populations 1.22055 0.98156 0.99843 0.99139 1.20249 0.92083 0.90413 0.90534 1.22184 1.00179 0.97366 1.01272 1.44214 1.59701 1.27134 1.00790 1.19398 1.12030 0.99786 1.07591 0.92012 1.25630 0.97973 0.99347 1.01117 1.70177 1.24843 1.40905 1.20414 0.85532 0.80447 0.79413 0.76537 1.21927 1.22311 1.19703 1.20987 0.93280 0.97155 0.86414 1.22292 1.00914 0.99938 0.93523 1.20520 0.85652 1.02174 0.97636 1.29557 0.90624 0.89675 0.92089 1.72026 1.17830 1.16443 1.18907 1.28173 0.86834 0.99522 0.99878 1.74621 1.16613 1.06512 1.14850 1.85257 1.14778 1.42568 1.56684 0.93121 0.94205 0.95053 0.92705 0.94196 0.92575 0.91973 0.94645 0.91017 0.93041 0.95118 0.92673 0.85931 0.84917 0.72503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.09 71.98 0.58 -4.92 16 2 C 0.17 7.63 2.39 44.99 0.11 7.74 16 3 C -0.15 -5.24 9.14 71.98 0.66 -4.58 16 4 N -0.60 -27.26 2.41 -678.03 -1.64 -28.90 16 5 C -0.26 -13.46 9.57 84.03 0.80 -12.66 16 6 H 0.06 3.20 7.90 -2.91 -0.02 3.17 16 7 C -0.04 -2.41 4.85 84.86 0.41 -2.00 16 8 N -0.92 -52.29 10.40 21.65 0.23 -52.06 16 9 Si 0.95 44.42 29.59 68.60 2.03 46.45 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 C 0.15 5.18 5.13 86.38 0.44 5.62 16 14 C -0.13 -4.20 5.25 30.59 0.16 -4.04 16 15 C -0.02 -0.48 5.84 29.85 0.17 -0.31 16 16 C 0.20 5.60 7.77 88.38 0.69 6.29 16 17 N -0.52 -15.46 11.55 -315.47 -3.64 -19.11 16 18 C 0.15 3.84 13.11 180.60 2.37 6.21 16 19 N -0.41 -12.07 12.16 -70.53 -0.86 -12.93 16 20 O 0.06 1.78 11.31 74.83 0.85 2.62 16 21 H 0.05 1.83 6.11 -2.39 -0.01 1.81 16 22 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.03 1.52 7.40 -2.39 -0.02 1.50 16 24 H 0.05 2.89 5.85 -2.39 -0.01 2.88 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.85 6.61 -2.39 -0.02 1.84 16 28 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 29 H 0.07 2.10 6.34 -2.39 -0.02 2.08 16 30 H 0.05 1.74 8.04 -2.38 -0.02 1.72 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 2.00 5.43 -2.39 -0.01 1.98 16 33 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.26 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -64.15 288.76 4.44 -59.71 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.08 Total: 6.86 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 6.40 Total: -2.65 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -5.91 Total: -113.00 kcal Atomic # 8 Polarization: 1.78 SS G_CDS: 0.85 Total: 2.62 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.15 4.44 -59.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695653909.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.366 kcal (2) G-P(sol) polarization free energy of solvation -64.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds