Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31127 * 126.55364 * 2 1 4 4 C 1.34492 * 105.61350 * 180.12210 * 3 2 1 5 5 C 1.50703 * 126.28600 * 179.90629 * 4 3 2 6 6 C 1.53004 * 109.46807 * 269.70902 * 5 4 3 7 7 N 1.46901 * 109.46916 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47224 * 325.00460 * 8 7 6 10 10 C 1.53002 * 109.47102 * 85.00132 * 8 7 6 11 11 C 1.52996 * 109.46819 * 205.00022 * 8 7 6 12 12 C 1.50704 * 109.47341 * 65.00385 * 11 8 7 13 13 H 1.08005 * 119.99728 * 359.97438 * 12 11 8 14 14 C 1.37872 * 119.99972 * 179.97438 * 12 11 8 15 15 N 1.31512 * 120.00363 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99722 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47018 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47306 * 120.00511 * 16 14 12 19 19 H 1.48502 * 109.47079 * 240.00240 * 16 14 12 20 20 N 1.29948 * 107.42654 * 359.63953 * 4 3 2 21 21 O 1.21300 * 110.24689 * 0.22843 * 20 4 3 22 22 H 1.08995 * 109.47054 * 180.24984 * 1 2 3 23 23 H 1.08998 * 109.46699 * 300.25517 * 1 2 3 24 24 H 1.09000 * 109.47009 * 60.25412 * 1 2 3 25 25 H 1.08995 * 109.47327 * 149.71590 * 5 4 3 26 26 H 1.08996 * 109.47062 * 29.70447 * 5 4 3 27 27 H 1.09004 * 109.46889 * 60.00274 * 6 5 4 28 28 H 1.08995 * 109.47384 * 299.99914 * 6 5 4 29 29 H 1.00901 * 111.00067 * 303.95263 * 7 6 5 30 30 H 1.08999 * 109.47105 * 180.02562 * 10 8 7 31 31 H 1.08996 * 109.46950 * 299.99914 * 10 8 7 32 32 H 1.09003 * 109.46813 * 60.00077 * 10 8 7 33 33 H 1.09006 * 109.47142 * 184.99909 * 11 8 7 34 34 H 1.08991 * 109.47453 * 304.99990 * 11 8 7 35 35 H 0.96996 * 120.00111 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0533 0.0000 4 6 3.5441 0.5727 -0.0028 5 6 4.8112 1.3885 -0.0059 6 6 5.2406 1.6580 -1.4495 7 7 6.4755 2.4537 -1.4526 8 6 6.9184 2.7330 -2.8251 9 1 6.6866 1.8796 -3.4625 10 6 6.1951 3.9741 -3.3518 11 6 8.4281 2.9806 -2.8333 12 6 9.1465 1.7182 -2.4318 13 1 8.5825 0.8283 -2.1941 14 6 10.5236 1.6992 -2.3679 15 7 11.2103 2.7829 -2.6569 16 14 11.4140 0.1345 -1.8695 17 1 10.4204 -0.9347 -1.5960 18 1 12.3139 -0.2949 -2.9698 19 1 12.2154 0.3894 -0.6456 20 7 3.4645 -0.7243 0.0035 21 8 2.3029 -1.0736 0.0052 22 1 -0.3633 -1.0276 0.0045 23 1 -0.3633 0.5178 0.8877 24 1 -0.3633 0.5099 -0.8923 25 1 5.5983 0.8392 0.5107 26 1 4.6347 2.3358 0.5035 27 1 4.4536 2.2073 -1.9661 28 1 5.4172 0.7107 -1.9589 29 1 6.3559 3.3089 -0.9305 30 1 6.5233 4.1811 -4.3704 31 1 5.1195 3.7977 -3.3459 32 1 6.4269 4.8275 -2.7145 33 1 8.7427 3.2747 -3.8348 34 1 8.6697 3.7760 -2.1284 35 1 12.1792 2.7694 -2.6123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = 52.736035 kcal Electronic energy + Delta-G solvation = -16557.419462 eV Core-core repulsion = 13786.370578 eV Total energy + Delta-G solvation = -2771.048884 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.66026 -37.23718 -36.02519 -34.17530 -32.81466 -31.55871 -29.14788 -28.18274 -27.19759 -24.07648 -23.17222 -22.47243 -21.07471 -19.67730 -18.23431 -17.44553 -16.18933 -15.50540 -14.93648 -14.68920 -14.41900 -13.83836 -13.78797 -13.71120 -13.13279 -12.60688 -12.56137 -12.21132 -12.09143 -11.75318 -11.47199 -11.33797 -11.22584 -10.97450 -10.83629 -10.54095 -10.40024 -10.03158 -9.89787 -9.25210 -8.93030 -8.22271 -7.60201 -5.84365 -3.81773 1.06641 2.15528 2.71306 3.41392 3.48632 3.53100 3.54844 3.98656 4.60551 4.74365 4.89630 4.92391 4.95605 5.25227 5.29242 5.44706 5.53566 5.57059 5.73448 5.78547 5.92274 5.94186 6.03393 6.14076 6.20061 6.47573 6.64367 7.03754 7.54979 7.70789 8.01979 8.08339 8.13069 8.19009 8.63846 9.23933 9.79649 11.27825 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030581 B = 0.004720 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.371955 B = 5931.171962 C = 6657.161627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.167 3.833 3 N -0.483 5.483 4 C 0.183 3.817 5 C -0.030 4.030 6 C 0.070 3.930 7 N -0.662 5.662 8 C 0.089 3.911 9 H 0.064 0.936 10 C -0.180 4.180 11 C 0.033 3.967 12 C -0.487 4.487 13 H 0.059 0.941 14 C 0.049 3.951 15 N -0.905 5.905 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.287 1.287 20 N -0.380 5.380 21 O 0.074 5.926 22 H 0.095 0.905 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.333 0.667 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.687 -3.174 4.832 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 N -0.217 5.217 4 C -0.090 4.090 5 C -0.070 4.070 6 C -0.061 4.061 7 N -0.292 5.292 8 C -0.020 4.020 9 H 0.082 0.918 10 C -0.239 4.239 11 C -0.004 4.004 12 C -0.526 4.526 13 H 0.077 0.923 14 C -0.150 4.150 15 N -0.546 5.546 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.213 1.213 20 N -0.087 5.087 21 O 0.016 5.984 22 H 0.114 0.886 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.293 -3.768 4.904 21.215 hybrid contribution -0.217 -0.167 0.004 0.274 sum -20.510 -3.935 4.909 21.453 Atomic orbital electron populations 1.20347 0.80410 1.05431 1.05529 1.28841 0.98926 0.81070 0.96475 1.71886 1.00498 1.28955 1.20399 1.25934 0.95263 0.88191 0.99651 1.20029 0.88487 0.98512 0.99935 1.21818 0.91774 0.99113 0.93444 1.60526 1.29058 1.23829 1.15769 1.21803 0.98683 0.94583 0.86898 0.91807 1.22553 0.99052 1.00285 1.02001 1.19120 0.87019 0.97464 0.96845 1.21201 0.90751 0.97276 1.43377 0.92324 1.25003 0.97856 0.95965 0.96159 1.69973 1.06349 1.27520 1.50739 0.86583 0.79669 0.84060 0.77953 1.19836 1.21419 1.21289 1.74704 0.96920 1.15929 1.21182 1.85305 1.11604 1.35786 1.65745 0.88621 0.88017 0.88000 0.87878 0.88900 0.95819 0.91114 0.84989 0.92407 0.94440 0.92903 0.96397 0.96405 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.17 1.74 8.51 -13.06 -0.11 1.62 16 3 N -0.48 -6.47 11.55 -9.87 -0.11 -6.58 16 4 C 0.18 2.71 7.47 -156.37 -1.17 1.54 16 5 C -0.03 -0.44 6.10 -27.88 -0.17 -0.61 16 6 C 0.07 1.14 5.47 -3.82 -0.02 1.12 16 7 N -0.66 -12.48 5.97 -106.72 -0.64 -13.12 16 8 C 0.09 1.85 2.53 -67.71 -0.17 1.67 16 9 H 0.06 1.36 7.80 -51.93 -0.41 0.96 16 10 C -0.18 -3.09 9.16 37.16 0.34 -2.75 16 11 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 12 C -0.49 -14.03 8.84 -34.44 -0.30 -14.33 16 13 H 0.06 1.69 7.74 -52.48 -0.41 1.29 16 14 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 15 N -0.90 -27.82 13.29 55.43 0.74 -27.09 16 16 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16 17 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 N -0.38 -5.81 12.16 30.90 0.38 -5.44 16 21 O 0.07 0.93 11.31 18.11 0.20 1.14 16 22 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 23 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.37 7.43 -51.93 -0.39 -0.01 16 28 H 0.07 1.26 8.06 -51.93 -0.42 0.85 16 29 H 0.33 5.72 8.47 -39.29 -0.33 5.39 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 32 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -33.55 302.36 -6.63 -40.18 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.27 Total: -1.68 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.45 Total: -9.54 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.36 Total: -52.22 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: 0.20 Total: 1.14 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.55 -6.63 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.914 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds